data_7NJN # _model_server_result.job_id fRC7MhfS--WZ_UC1t6Jyeg _model_server_result.datetime_utc '2024-10-20 07:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7njn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":600}' # _entry.id 7NJN # _exptl.entry_id 7NJN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NJN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 U N N ? 9 W N N ? 9 Y N N ? 9 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 U O2G ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 U O2B ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 V MG MG . A MG 601 1_555 FA O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 V MG MG . A MG 601 1_555 FA O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc6 V MG MG . A MG 601 1_555 FA O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 B OG1 THR 179 B THR 179 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 W O2G ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 W O2B ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc10 X MG MG . B MG 601 1_555 GA O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 X MG MG . B MG 601 1_555 GA O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 X MG MG . B MG 601 1_555 GA O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 C OG1 THR 179 C THR 179 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc14 Y O2G ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 Y O2B ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc16 Z MG MG . C MG 601 1_555 HA O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc17 Z MG MG . C MG 601 1_555 HA O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc18 Z MG MG . C MG 601 1_555 HA O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc19 D OG1 THR 167 D THR 167 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc20 AA O2B ADP . D ADP 600 1_555 BA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc21 BA MG MG . D MG 601 1_555 IA O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc22 BA MG MG . D MG 601 1_555 IA O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc23 BA MG MG . D MG 601 1_555 IA O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc24 BA MG MG . D MG 601 1_555 IA O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc25 F OG1 THR 167 F THR 167 1_555 EA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc26 DA O2G ATP . F ATP 600 1_555 EA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc27 DA O2B ATP . F ATP 600 1_555 EA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc28 EA MG MG . F MG 601 1_555 JA O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc29 EA MG MG . F MG 601 1_555 JA O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc30 EA MG MG . F MG 601 1_555 JA O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7NJN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 ATP A 1 600 600 ATP ATP . V 10 MG A 1 601 601 MG MG . W 9 ATP B 1 600 600 ATP ATP . X 10 MG B 1 601 601 MG MG . Y 9 ATP C 1 600 600 ATP ATP . Z 10 MG C 1 601 601 MG MG . AA 11 ADP D 1 600 600 ADP ADP . BA 10 MG D 1 601 601 MG MG . CA 11 ADP E 1 600 600 ADP ADP . DA 9 ATP F 1 600 600 ATP ATP . EA 10 MG F 1 601 601 MG MG . FA 12 HOH A 1 701 701 HOH HOH . FA 12 HOH A 2 702 703 HOH HOH . FA 12 HOH A 3 703 702 HOH HOH . GA 12 HOH B 1 701 702 HOH HOH . GA 12 HOH B 2 702 703 HOH HOH . GA 12 HOH B 3 703 701 HOH HOH . HA 12 HOH C 1 701 701 HOH HOH . HA 12 HOH C 2 702 703 HOH HOH . HA 12 HOH C 3 703 702 HOH HOH . IA 12 HOH D 1 701 702 HOH HOH . IA 12 HOH D 2 702 701 HOH HOH . IA 12 HOH D 3 703 703 HOH HOH . IA 12 HOH D 4 704 704 HOH HOH . JA 12 HOH F 1 701 702 HOH HOH . JA 12 HOH F 2 702 701 HOH HOH . JA 12 HOH F 3 703 703 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 9 189.216 196.922 249.169 1 43.44 ? PG ATP 600 C 1 HETATM 2 O O1G ATP . . . Y 9 190.685 196.924 249.381 1 43.44 ? O1G ATP 600 C 1 HETATM 3 O O2G ATP . . . Y 9 188.453 196.172 250.237 1 43.44 ? O2G ATP 600 C 1 HETATM 4 O O3G ATP . . . Y 9 188.606 198.308 249.019 1 43.44 ? O3G ATP 600 C 1 HETATM 5 P PB ATP . . . Y 9 188.771 194.722 247.226 1 43.44 ? PB ATP 600 C 1 HETATM 6 O O1B ATP . . . Y 9 190.081 194.235 246.777 1 43.44 ? O1B ATP 600 C 1 HETATM 7 O O2B ATP . . . Y 9 188.071 193.855 248.258 1 43.44 ? O2B ATP 600 C 1 HETATM 8 O O3B ATP . . . Y 9 188.847 196.179 247.817 1 43.44 ? O3B ATP 600 C 1 HETATM 9 P PA ATP . . . Y 9 186.193 195.05 245.852 1 43.44 ? PA ATP 600 C 1 HETATM 10 O O1A ATP . . . Y 9 185.635 196.021 246.813 1 43.44 ? O1A ATP 600 C 1 HETATM 11 O O2A ATP . . . Y 9 185.618 193.646 245.938 1 43.44 ? O2A ATP 600 C 1 HETATM 12 O O3A ATP . . . Y 9 187.752 194.921 246.022 1 43.44 ? O3A ATP 600 C 1 HETATM 13 O O5' ATP . . . Y 9 186.039 195.556 244.367 1 43.44 ? O5' ATP 600 C 1 HETATM 14 C C5' ATP . . . Y 9 186.605 196.812 243.941 1 43.44 ? C5' ATP 600 C 1 HETATM 15 C C4' ATP . . . Y 9 185.715 197.428 242.896 1 43.44 ? C4' ATP 600 C 1 HETATM 16 O O4' ATP . . . Y 9 185.729 196.538 241.756 1 43.44 ? O4' ATP 600 C 1 HETATM 17 C C3' ATP . . . Y 9 184.26 197.45 243.362 1 43.44 ? C3' ATP 600 C 1 HETATM 18 O O3' ATP . . . Y 9 183.632 198.486 242.621 1 43.44 ? O3' ATP 600 C 1 HETATM 19 C C2' ATP . . . Y 9 183.709 196.143 242.799 1 43.44 ? C2' ATP 600 C 1 HETATM 20 O O2' ATP . . . Y 9 182.352 196.394 242.469 1 43.44 ? O2' ATP 600 C 1 HETATM 21 C C1' ATP . . . Y 9 184.417 196.121 241.454 1 43.44 ? C1' ATP 600 C 1 HETATM 22 N N9 ATP . . . Y 9 184.513 194.768 240.921 1 43.44 ? N9 ATP 600 C 1 HETATM 23 C C8 ATP . . . Y 9 184.967 193.653 241.574 1 43.44 ? C8 ATP 600 C 1 HETATM 24 N N7 ATP . . . Y 9 184.936 192.56 240.853 1 43.44 ? N7 ATP 600 C 1 HETATM 25 C C5 ATP . . . Y 9 184.424 192.985 239.637 1 43.44 ? C5 ATP 600 C 1 HETATM 26 C C6 ATP . . . Y 9 184.145 192.307 238.435 1 43.44 ? C6 ATP 600 C 1 HETATM 27 N N6 ATP . . . Y 9 184.345 190.998 238.255 1 43.44 ? N6 ATP 600 C 1 HETATM 28 N N1 ATP . . . Y 9 183.64 193.027 237.412 1 43.44 ? N1 ATP 600 C 1 HETATM 29 C C2 ATP . . . Y 9 183.433 194.334 237.586 1 43.44 ? C2 ATP 600 C 1 HETATM 30 N N3 ATP . . . Y 9 183.661 195.079 238.668 1 43.44 ? N3 ATP 600 C 1 HETATM 31 C C4 ATP . . . Y 9 184.16 194.343 239.665 1 43.44 ? C4 ATP 600 C 1 HETATM 32 H "H5'1" ATP . . . Y 9 187.487 196.661 243.567 1 43.44 ? "H5'1" ATP 600 C 1 HETATM 33 H "H5'2" ATP . . . Y 9 186.674 197.411 244.702 1 43.44 ? "H5'2" ATP 600 C 1 HETATM 34 H H4' ATP . . . Y 9 186.021 198.319 242.664 1 43.44 ? H4' ATP 600 C 1 HETATM 35 H H3' ATP . . . Y 9 184.155 197.54 244.322 1 43.44 ? H3' ATP 600 C 1 HETATM 36 H HO3' ATP . . . Y 9 182.893 198.174 242.34 1 43.44 ? HO3' ATP 600 C 1 HETATM 37 H H2' ATP . . . Y 9 183.847 195.364 243.36 1 43.44 ? H2' ATP 600 C 1 HETATM 38 H HO2' ATP . . . Y 9 182.016 195.651 242.226 1 43.44 ? HO2' ATP 600 C 1 HETATM 39 H H1' ATP . . . Y 9 183.985 196.713 240.818 1 43.44 ? H1' ATP 600 C 1 HETATM 40 H H8 ATP . . . Y 9 185.269 193.67 242.453 1 43.44 ? H8 ATP 600 C 1 HETATM 41 H HN61 ATP . . . Y 9 184.668 190.52 238.893 1 43.44 ? HN61 ATP 600 C 1 HETATM 42 H HN62 ATP . . . Y 9 184.15 190.633 237.501 1 43.44 ? HN62 ATP 600 C 1 HETATM 43 H H2 ATP . . . Y 9 183.085 194.787 236.852 1 43.44 ? H2 ATP 600 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 113 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #