data_7NL6 # _model_server_result.job_id BQ5dTaNnnTQ3ON09ef2AlQ _model_server_result.datetime_utc '2024-12-02 11:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7NL6 # _exptl.entry_id 7NL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NL6 _cell.length_a 59.473 _cell.length_b 59.473 _cell.length_c 73.939 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 253 1_555 A SG CYS 156 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 28 A CYS 256 1_555 A SG CYS 39 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 56 A CYS 284 1_555 A SG CYS 149 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 128 A CYS 356 1_555 A SG CYS 141 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A OD1 ASP 92 A ASP 320 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc2 A OD2 ASP 92 A ASP 320 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc3 A OE1 GLU 96 A GLU 324 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc4 A OE2 GLU 96 A GLU 324 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc5 A OE1 GLU 96 A GLU 324 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc6 A OE1 GLU 119 A GLU 347 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc7 A OD1 ASN 121 A ASN 349 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 A OD1 ASN 122 A ASN 350 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc9 A OE2 GLU 125 A GLU 353 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc10 A O GLU 126 A GLU 354 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc11 A OE1 GLU 126 A GLU 354 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc12 A OD1 ASP 127 A ASP 355 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc13 A OD1 ASP 127 A ASP 355 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc14 A OD2 ASP 127 A ASP 355 1_555 D CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc15 A OD1 ASN 137 A ASN 365 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc16 A O ASP 138 A ASP 366 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc17 A OD1 ASP 138 A ASP 366 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc18 B CA CA . A CA 501 1_555 G O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc19 C CA CA . A CA 502 1_555 E O3 UH8 . A UH8 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc20 C CA CA . A CA 502 1_555 E O4 UH8 . A UH8 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc21 D CA CA . A CA 503 1_555 G O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc22 D CA CA . A CA 503 1_555 G O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc23 D CA CA . A CA 503 1_555 G O HOH . A HOH 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NL6 _atom_sites.fract_transf_matrix[1][1] 0.016814 _atom_sites.fract_transf_matrix[1][2] 0.009708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 402 CA CA . C 2 CA A 1 502 403 CA CA . D 2 CA A 1 503 404 CA CA . E 3 UH8 A 1 504 501 UH8 137 . F 4 NO3 A 1 505 1 NO3 NO3 . G 5 HOH A 1 601 43 HOH HOH . G 5 HOH A 2 602 61 HOH HOH . G 5 HOH A 3 603 16 HOH HOH . G 5 HOH A 4 604 113 HOH HOH . G 5 HOH A 5 605 26 HOH HOH . G 5 HOH A 6 606 8 HOH HOH . G 5 HOH A 7 607 13 HOH HOH . G 5 HOH A 8 608 12 HOH HOH . G 5 HOH A 9 609 17 HOH HOH . G 5 HOH A 10 610 105 HOH HOH . G 5 HOH A 11 611 31 HOH HOH . G 5 HOH A 12 612 11 HOH HOH . G 5 HOH A 13 613 50 HOH HOH . G 5 HOH A 14 614 64 HOH HOH . G 5 HOH A 15 615 2 HOH HOH . G 5 HOH A 16 616 9 HOH HOH . G 5 HOH A 17 617 41 HOH HOH . G 5 HOH A 18 618 19 HOH HOH . G 5 HOH A 19 619 5 HOH HOH . G 5 HOH A 20 620 3 HOH HOH . G 5 HOH A 21 621 63 HOH HOH . G 5 HOH A 22 622 48 HOH HOH . G 5 HOH A 23 623 71 HOH HOH . G 5 HOH A 24 624 47 HOH HOH . G 5 HOH A 25 625 14 HOH HOH . G 5 HOH A 26 626 57 HOH HOH . G 5 HOH A 27 627 18 HOH HOH . G 5 HOH A 28 628 55 HOH HOH . G 5 HOH A 29 629 69 HOH HOH . G 5 HOH A 30 630 33 HOH HOH . G 5 HOH A 31 631 72 HOH HOH . G 5 HOH A 32 632 106 HOH HOH . G 5 HOH A 33 633 93 HOH HOH . G 5 HOH A 34 634 70 HOH HOH . G 5 HOH A 35 635 1 HOH HOH . G 5 HOH A 36 636 21 HOH HOH . G 5 HOH A 37 637 22 HOH HOH . G 5 HOH A 38 638 6 HOH HOH . G 5 HOH A 39 639 42 HOH HOH . G 5 HOH A 40 640 94 HOH HOH . G 5 HOH A 41 641 39 HOH HOH . G 5 HOH A 42 642 10 HOH HOH . G 5 HOH A 43 643 60 HOH HOH . G 5 HOH A 44 644 45 HOH HOH . G 5 HOH A 45 645 74 HOH HOH . G 5 HOH A 46 646 67 HOH HOH . G 5 HOH A 47 647 103 HOH HOH . G 5 HOH A 48 648 65 HOH HOH . G 5 HOH A 49 649 88 HOH HOH . G 5 HOH A 50 650 37 HOH HOH . G 5 HOH A 51 651 82 HOH HOH . G 5 HOH A 52 652 15 HOH HOH . G 5 HOH A 53 653 49 HOH HOH . G 5 HOH A 54 654 78 HOH HOH . G 5 HOH A 55 655 84 HOH HOH . G 5 HOH A 56 656 104 HOH HOH . G 5 HOH A 57 657 40 HOH HOH . G 5 HOH A 58 658 44 HOH HOH . G 5 HOH A 59 659 110 HOH HOH . G 5 HOH A 60 660 59 HOH HOH . G 5 HOH A 61 661 81 HOH HOH . G 5 HOH A 62 662 87 HOH HOH . G 5 HOH A 63 663 85 HOH HOH . G 5 HOH A 64 664 46 HOH HOH . G 5 HOH A 65 665 29 HOH HOH . G 5 HOH A 66 666 102 HOH HOH . G 5 HOH A 67 667 77 HOH HOH . G 5 HOH A 68 668 86 HOH HOH . G 5 HOH A 69 669 83 HOH HOH . G 5 HOH A 70 670 36 HOH HOH . G 5 HOH A 71 671 79 HOH HOH . G 5 HOH A 72 672 108 HOH HOH . G 5 HOH A 73 673 114 HOH HOH . G 5 HOH A 74 674 112 HOH HOH . G 5 HOH A 75 675 116 HOH HOH . G 5 HOH A 76 676 90 HOH HOH . G 5 HOH A 77 677 7 HOH HOH . G 5 HOH A 78 678 20 HOH HOH . G 5 HOH A 79 679 30 HOH HOH . G 5 HOH A 80 680 73 HOH HOH . G 5 HOH A 81 681 52 HOH HOH . G 5 HOH A 82 682 89 HOH HOH . G 5 HOH A 83 683 32 HOH HOH . G 5 HOH A 84 684 56 HOH HOH . G 5 HOH A 85 685 53 HOH HOH . G 5 HOH A 86 686 97 HOH HOH . G 5 HOH A 87 687 68 HOH HOH . G 5 HOH A 88 688 75 HOH HOH . G 5 HOH A 89 689 107 HOH HOH . G 5 HOH A 90 690 92 HOH HOH . G 5 HOH A 91 691 27 HOH HOH . G 5 HOH A 92 692 91 HOH HOH . G 5 HOH A 93 693 100 HOH HOH . G 5 HOH A 94 694 99 HOH HOH . G 5 HOH A 95 695 96 HOH HOH . G 5 HOH A 96 696 98 HOH HOH . G 5 HOH A 97 697 109 HOH HOH . G 5 HOH A 98 698 115 HOH HOH . G 5 HOH A 99 699 54 HOH HOH . G 5 HOH A 100 700 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.842 _atom_site.Cartn_y -14.088 _atom_site.Cartn_z 27.851 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #