data_7NLD
#
_model_server_result.job_id            Jz4Dx5YlGHcWZMkejDWnVA 
_model_server_result.datetime_utc      '2024-12-28 04:37:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nld 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    7NLD 
#
_exptl.entry_id    7NLD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              503.01 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(2-((2'-chloro-3'-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl)-3-methoxy-[1,1'-biphenyl]-4-yl)(methyl)amino)ethyl)methanesulfonamide" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.29 
_cell.angle_gamma         90 
_cell.entry_id            7NLD 
_cell.length_a            67.087 
_cell.length_b            75.255 
_cell.length_c            74.354 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NLD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,H,J,M 1 1 
B,C,G,K,L 2 1 
E,I,N 3 1 
F,O 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 8.146286 37.6275 -73.906396 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 C CYS 40 1_555 A SG CYS 97 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 23 A CYS 40 1_555 B SG CYS 97 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf3 C SG CYS 23 B CYS 40 1_555 C SG CYS 97 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf4 D SG CYS 23 D CYS 40 1_555 D SG CYS 97 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 E SG CYS 23 E CYS 40 1_555 E SG CYS 97 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf6 F SG CYS 23 F CYS 40 1_555 F SG CYS 97 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
#
_chem_comp.formula           'C25 H27 Cl N2 O5 S' 
_chem_comp.formula_weight    503.01 
_chem_comp.id                UGZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(2-((2'-chloro-3'-(2,3-dihydrobenzo[b][1,4]dioxin-6-yl)-3-methoxy-[1,1'-biphenyl]-4-yl)(methyl)amino)ethyl)methanesulfonamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ~{N}-[2-[[4-[2-chloranyl-3-(2,3-dihydro-1,4-benzodioxin-6-yl)phenyl]-2-methoxy-phenyl]methylamino]ethyl]methanesulfonamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 UGZ doub 358 n y 
C19 C22 UGZ sing 359 n y 
O3 C23 UGZ sing 360 n n 
O3 C22 UGZ sing 361 n n 
C18 C17 UGZ sing 362 n y 
C23 C24 UGZ sing 363 n n 
C22 C21 UGZ doub 364 n y 
C15 C14 UGZ doub 365 n y 
C15 C16 UGZ sing 366 n y 
C17 C16 UGZ sing 367 n n 
C17 C20 UGZ doub 368 n y 
C21 C20 UGZ sing 369 n y 
C21 O4 UGZ sing 370 n n 
C14 C13 UGZ sing 371 n y 
C5 O UGZ sing 372 n n 
C16 C UGZ doub 373 n y 
C24 O4 UGZ sing 374 n n 
O1 S UGZ doub 375 n n 
C13 C1 UGZ doub 376 n y 
C C1 UGZ sing 377 n y 
C CL UGZ sing 378 n n 
O2 S UGZ doub 379 n n 
C1 C2 UGZ sing 380 n n 
C3 C2 UGZ doub 381 n y 
C3 C4 UGZ sing 382 n y 
O C4 UGZ sing 383 n n 
S N1 UGZ sing 384 n n 
S C10 UGZ sing 385 n n 
C2 C12 UGZ sing 386 n y 
C4 C6 UGZ doub 387 n y 
N1 C9 UGZ sing 388 n n 
C12 C11 UGZ doub 389 n y 
C9 C8 UGZ sing 390 n n 
N C8 UGZ sing 391 n n 
N C7 UGZ sing 392 n n 
C6 C11 UGZ sing 393 n y 
C6 C7 UGZ sing 394 n n 
C5 H1 UGZ sing 395 n n 
C5 H2 UGZ sing 396 n n 
C5 H3 UGZ sing 397 n n 
C7 H4 UGZ sing 398 n n 
C7 H5 UGZ sing 399 n n 
N1 H6 UGZ sing 400 n n 
N H7 UGZ sing 401 n n 
C10 H9 UGZ sing 402 n n 
C10 H10 UGZ sing 403 n n 
C10 H11 UGZ sing 404 n n 
C11 H12 UGZ sing 405 n n 
C12 H13 UGZ sing 406 n n 
C13 H14 UGZ sing 407 n n 
C14 H15 UGZ sing 408 n n 
C15 H16 UGZ sing 409 n n 
C18 H17 UGZ sing 410 n n 
C19 H18 UGZ sing 411 n n 
C20 H19 UGZ sing 412 n n 
C23 H20 UGZ sing 413 n n 
C23 H21 UGZ sing 414 n n 
C24 H22 UGZ sing 415 n n 
C24 H23 UGZ sing 416 n n 
C3 H24 UGZ sing 417 n n 
C8 H25 UGZ sing 418 n n 
C8 H26 UGZ sing 419 n n 
C9 H27 UGZ sing 420 n n 
C9 H28 UGZ sing 421 n n 
#
_atom_sites.entry_id                     7NLD 
_atom_sites.fract_transf_matrix[1][1]    0.014906 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001643 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 UGZ A 1 201 201 UGZ 141 . 
H 2 UGZ D 1 201 201 UGZ 141 . 
I 2 UGZ E 1 201 201 UGZ 141 . 
J 3 HOH C 1 201 38 HOH HOH . 
J 3 HOH C 2 202 39 HOH HOH . 
J 3 HOH C 3 203 22 HOH HOH . 
J 3 HOH C 4 204 16 HOH HOH . 
J 3 HOH C 5 205 7 HOH HOH . 
J 3 HOH C 6 206 1 HOH HOH . 
J 3 HOH C 7 207 44 HOH HOH . 
K 3 HOH A 1 301 18 HOH HOH . 
K 3 HOH A 2 302 13 HOH HOH . 
K 3 HOH A 3 303 6 HOH HOH . 
K 3 HOH A 4 304 31 HOH HOH . 
K 3 HOH A 5 305 42 HOH HOH . 
K 3 HOH A 6 306 43 HOH HOH . 
L 3 HOH B 1 201 23 HOH HOH . 
L 3 HOH B 2 202 3 HOH HOH . 
L 3 HOH B 3 203 2 HOH HOH . 
L 3 HOH B 4 204 40 HOH HOH . 
L 3 HOH B 5 205 21 HOH HOH . 
L 3 HOH B 6 206 27 HOH HOH . 
L 3 HOH B 7 207 30 HOH HOH . 
L 3 HOH B 8 208 15 HOH HOH . 
L 3 HOH B 9 209 37 HOH HOH . 
M 3 HOH D 1 301 14 HOH HOH . 
M 3 HOH D 2 302 45 HOH HOH . 
M 3 HOH D 3 303 35 HOH HOH . 
M 3 HOH D 4 304 19 HOH HOH . 
M 3 HOH D 5 305 32 HOH HOH . 
M 3 HOH D 6 306 4 HOH HOH . 
M 3 HOH D 7 307 25 HOH HOH . 
M 3 HOH D 8 308 17 HOH HOH . 
M 3 HOH D 9 309 29 HOH HOH . 
N 3 HOH E 1 301 20 HOH HOH . 
N 3 HOH E 2 302 34 HOH HOH . 
N 3 HOH E 3 303 11 HOH HOH . 
N 3 HOH E 4 304 5 HOH HOH . 
O 3 HOH F 1 201 28 HOH HOH . 
O 3 HOH F 2 202 36 HOH HOH . 
O 3 HOH F 3 203 41 HOH HOH . 
O 3 HOH F 4 204 33 HOH HOH . 
O 3 HOH F 5 205 26 HOH HOH . 
O 3 HOH F 6 206 10 HOH HOH . 
O 3 HOH F 7 207 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 UGZ . . . H 2 4.553 0.359 1.688 1 65.5 ? C6 UGZ 201 D 1 
HETATM 2 C C5 UGZ . . . H 2 2.514 0.378 4.625 1 74.88 ? C5 UGZ 201 D 1 
HETATM 3 C C7 UGZ . . . H 2 3.84 1.502 1 1 66.15 ? C7 UGZ 201 D 1 
HETATM 4 C C4 UGZ . . . H 2 4.009 -0.218 2.841 1 69.83 ? C4 UGZ 201 D 1 
HETATM 5 O O2 UGZ . . . H 2 0.491 4.513 2.624 1 132.6 ? O2 UGZ 201 D 1 
HETATM 6 C C2 UGZ . . . H 2 5.929 -1.703 3.045 1 53 ? C2 UGZ 201 D 1 
HETATM 7 N N1 UGZ . . . H 2 2.469 5.965 2.558 1 100.47 ? N1 UGZ 201 D 1 
HETATM 8 N N UGZ . . . H 2 3.561 2.57 1.962 1 69.62 ? N UGZ 201 D 1 
HETATM 9 C C UGZ . . . H 2 7.905 -3.065 3.888 1 62.93 ? C UGZ 201 D 1 
HETATM 10 O O UGZ . . . H 2 2.807 0.319 3.23 1 70.76 ? O UGZ 201 D 1 
HETATM 11 C C1 UGZ . . . H 2 6.546 -2.948 3.588 1 57.62 ? C1 UGZ 201 D 1 
HETATM 12 C C10 UGZ . . . H 2 0.023 6.994 3.157 1 117.95 ? C10 UGZ 201 D 1 
HETATM 13 C C11 UGZ . . . H 2 5.807 -0.08 1.266 1 63.99 ? C11 UGZ 201 D 1 
HETATM 14 C C12 UGZ . . . H 2 6.484 -1.08 1.938 1 55.85 ? C12 UGZ 201 D 1 
HETATM 15 C C13 UGZ . . . H 2 5.715 -4.052 3.784 1 57.03 ? C13 UGZ 201 D 1 
HETATM 16 C C14 UGZ . . . H 2 6.243 -5.241 4.275 1 59.02 ? C14 UGZ 201 D 1 
HETATM 17 C C15 UGZ . . . H 2 7.601 -5.348 4.566 1 60.95 ? C15 UGZ 201 D 1 
HETATM 18 C C16 UGZ . . . H 2 8.453 -4.257 4.377 1 61.08 ? C16 UGZ 201 D 1 
HETATM 19 C C17 UGZ . . . H 2 9.91 -4.423 4.675 1 65.17 ? C17 UGZ 201 D 1 
HETATM 20 C C18 UGZ . . . H 2 10.562 -3.568 5.566 1 68.77 ? C18 UGZ 201 D 1 
HETATM 21 C C19 UGZ . . . H 2 11.906 -3.713 5.859 1 69.93 ? C19 UGZ 201 D 1 
HETATM 22 C C20 UGZ . . . H 2 10.658 -5.433 4.062 1 69.04 ? C20 UGZ 201 D 1 
HETATM 23 C C21 UGZ . . . H 2 12.006 -5.589 4.355 1 95.9 ? C21 UGZ 201 D 1 
HETATM 24 C C22 UGZ . . . H 2 12.627 -4.735 5.271 1 87.04 ? C22 UGZ 201 D 1 
HETATM 25 C C23 UGZ . . . H 2 14.379 -6.26 5.469 1 97.85 ? C23 UGZ 201 D 1 
HETATM 26 C C24 UGZ . . . H 2 14.098 -6.671 4.086 1 108.2 ? C24 UGZ 201 D 1 
HETATM 27 C C3 UGZ . . . H 2 4.698 -1.232 3.52 1 63.4 ? C3 UGZ 201 D 1 
HETATM 28 C C8 UGZ . . . H 2 3.296 3.863 1.334 1 78.67 ? C8 UGZ 201 D 1 
HETATM 29 C C9 UGZ . . . H 2 3.53 4.967 2.349 1 85.05 ? C9 UGZ 201 D 1 
HETATM 30 O O1 UGZ . . . H 2 1.398 5.455 4.709 1 112.6 ? O1 UGZ 201 D 1 
HETATM 31 O O3 UGZ . . . H 2 13.921 -4.923 5.678 1 90.58 ? O3 UGZ 201 D 1 
HETATM 32 O O4 UGZ . . . H 2 12.699 -6.594 3.724 1 117.22 ? O4 UGZ 201 D 1 
HETATM 33 S S UGZ . . . H 2 1.085 5.611 3.322 1 122.99 ? S UGZ 201 D 1 
HETATM 34 CL CL UGZ . . . H 2 8.947 -1.718 3.626 1 68.53 ? CL UGZ 201 D 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#