data_7NLP # _model_server_result.job_id qE1lqZsj2eJMZ1CZ2Zi94g _model_server_result.datetime_utc '2024-11-24 00:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NLP # _exptl.entry_id 7NLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-CANAVANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NLP _cell.length_a 174.058 _cell.length_b 174.058 _cell.length_c 71.154 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 71.154 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 71.154 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 71.154 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 N4 O3' _chem_comp.formula_weight 176.174 _chem_comp.id GGB _chem_comp.mon_nstd_flag . _chem_comp.name L-CANAVANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'L-2-AMINO-4-(GUANIDINOOXY)BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GGB sing 83 n n N H GGB sing 84 n n N H2 GGB sing 85 n n CA CB GGB sing 86 n n CA C GGB sing 87 n n CA HA GGB sing 88 n n CB CG GGB sing 89 n n CB HCB1 GGB sing 90 n n CB HCB2 GGB sing 91 n n CG OD GGB sing 92 n n CG HCG1 GGB sing 93 n n CG HCG2 GGB sing 94 n n C O GGB doub 95 n n C OXT GGB sing 96 n n OD NE GGB sing 97 n n NE CZ GGB sing 98 n n NE HNE GGB sing 99 n n CZ NH1 GGB doub 100 e n CZ NH2 GGB sing 101 n n NH1 HN1 GGB sing 102 n n NH2 HN21 GGB sing 103 n n NH2 HN22 GGB sing 104 n n OXT HXT GGB sing 105 n n # _atom_sites.entry_id 7NLP _atom_sites.fract_transf_matrix[1][1] 0.005745 _atom_sites.fract_transf_matrix[1][2] 0.003317 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GGB A 1 301 1 GGB LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 2 HOH HOH . D 4 HOH A 2 402 3 HOH HOH . D 4 HOH A 3 403 1 HOH HOH . D 4 HOH A 4 404 8 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 10 HOH HOH . D 4 HOH A 8 408 4 HOH HOH . D 4 HOH A 9 409 11 HOH HOH . D 4 HOH A 10 410 7 HOH HOH . D 4 HOH A 11 411 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GGB . . . B 2 33.569 -2.646 24.051 1 55.66 ? N GGB 301 A 1 HETATM 2 C CA GGB . . . B 2 33.763 -2.805 22.625 1 63.4 ? CA GGB 301 A 1 HETATM 3 C CB GGB . . . B 2 34.88 -3.815 22.389 1 79.07 ? CB GGB 301 A 1 HETATM 4 C CG GGB . . . B 2 35.431 -3.759 20.972 1 84.99 ? CG GGB 301 A 1 HETATM 5 C C GGB . . . B 2 32.468 -3.356 22.043 1 64.15 ? C GGB 301 A 1 HETATM 6 O OD GGB . . . B 2 36.726 -4.272 21.037 1 86.2 ? OD GGB 301 A 1 HETATM 7 N NE GGB . . . B 2 36.68 -5.646 20.798 1 89.16 ? NE GGB 301 A 1 HETATM 8 C CZ GGB . . . B 2 37.299 -6.121 19.578 1 89.66 ? CZ GGB 301 A 1 HETATM 9 N NH1 GGB . . . B 2 37.827 -5.298 18.797 1 88.57 ? NH1 GGB 301 A 1 HETATM 10 N NH2 GGB . . . B 2 37.293 -7.535 19.267 1 90.15 ? NH2 GGB 301 A 1 HETATM 11 O O GGB . . . B 2 32.23 -3.245 20.805 1 73.13 -1 O GGB 301 A 1 HETATM 12 O OXT GGB . . . B 2 31.642 -3.922 22.82 1 52.25 ? OXT GGB 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #