data_7NLR # _model_server_result.job_id cOzpMTY5Q6VlnZ0H0sUOjA _model_server_result.datetime_utc '2024-12-09 00:10:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7NLR # _exptl.entry_id 7NLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-phenyl-1H-imidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NLR _cell.length_a 173.819 _cell.length_b 173.819 _cell.length_c 72.432 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.432 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 72.432 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.432 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H8 N2' _chem_comp.formula_weight 144.173 _chem_comp.id PIY _chem_comp.mon_nstd_flag . _chem_comp.name 2-phenyl-1H-imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 PIY sing 260 n y N1 C4 PIY sing 261 n y C6 C2 PIY sing 262 n y C2 N3 PIY doub 263 n y N3 C5 PIY sing 264 n y C4 C5 PIY doub 265 n y C4 H4 PIY sing 266 n n C5 H5 PIY sing 267 n n C7 C6 PIY doub 268 n y C11 C6 PIY sing 269 n y C8 C7 PIY sing 270 n y C7 H7 PIY sing 271 n n C9 C8 PIY doub 272 n y C8 H8 PIY sing 273 n n C9 C10 PIY sing 274 n y C9 H9 PIY sing 275 n n C10 C11 PIY doub 276 n y C10 H10 PIY sing 277 n n C11 H11 PIY sing 278 n n N1 HN1 PIY sing 279 n n # _atom_sites.entry_id 7NLR _atom_sites.fract_transf_matrix[1][1] 0.005753 _atom_sites.fract_transf_matrix[1][2] 0.003322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 PIY A 1 303 1 PIY LIG . E 4 HOH A 1 401 9 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 7 HOH HOH . E 4 HOH A 5 405 11 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 12 HOH HOH . E 4 HOH A 8 408 20 HOH HOH . E 4 HOH A 9 409 18 HOH HOH . E 4 HOH A 10 410 8 HOH HOH . E 4 HOH A 11 411 19 HOH HOH . E 4 HOH A 12 412 1 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 23 HOH HOH . E 4 HOH A 16 416 22 HOH HOH . E 4 HOH A 17 417 5 HOH HOH . E 4 HOH A 18 418 4 HOH HOH . E 4 HOH A 19 419 15 HOH HOH . E 4 HOH A 20 420 16 HOH HOH . E 4 HOH A 21 421 17 HOH HOH . E 4 HOH A 22 422 10 HOH HOH . E 4 HOH A 23 423 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PIY . . . D 3 10.768 -17.33 37.563 0.5 76.95 ? N1 PIY 303 A 1 HETATM 2 C C2 PIY . . . D 3 10.858 -18.389 36.775 0.5 75.35 ? C2 PIY 303 A 1 HETATM 3 N N3 PIY . . . D 3 11.51 -19.349 37.404 0.5 73.77 ? N3 PIY 303 A 1 HETATM 4 C C4 PIY . . . D 3 11.365 -17.611 38.711 0.5 77.15 ? C4 PIY 303 A 1 HETATM 5 C C5 PIY . . . D 3 11.843 -18.908 38.605 0.5 74.13 ? C5 PIY 303 A 1 HETATM 6 C C6 PIY . . . D 3 10.346 -18.474 35.491 0.5 75.71 ? C6 PIY 303 A 1 HETATM 7 C C7 PIY . . . D 3 10.881 -19.392 34.6 0.5 75.24 ? C7 PIY 303 A 1 HETATM 8 C C8 PIY . . . D 3 10.376 -19.477 33.311 0.5 74.57 ? C8 PIY 303 A 1 HETATM 9 C C9 PIY . . . D 3 9.34 -18.645 32.912 0.5 76.35 ? C9 PIY 303 A 1 HETATM 10 C C10 PIY . . . D 3 8.805 -17.723 33.803 0.5 78.11 ? C10 PIY 303 A 1 HETATM 11 C C11 PIY . . . D 3 9.31 -17.639 35.093 0.5 76.34 ? C11 PIY 303 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #