data_7NLS # _model_server_result.job_id alsyRbe6GWoyD9NdDC3rWQ _model_server_result.datetime_utc '2025-01-25 13:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NLS # _exptl.entry_id 7NLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 3-iodanyl-4-oxidanyl-benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NLS _cell.length_a 174.238 _cell.length_b 174.238 _cell.length_c 72.03 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.03 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 72.03 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.03 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 I O3' _chem_comp.formula_weight 278.044 _chem_comp.id 98T _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 3-iodanyl-4-oxidanyl-benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I11 C10 98T sing 1 n n O09 C08 98T sing 2 n n C10 C08 98T doub 3 n y C10 C12 98T sing 4 n y C08 C07 98T sing 5 n y C12 C05 98T doub 6 n y C07 C06 98T doub 7 n y C05 C06 98T sing 8 n y C05 C02 98T sing 9 n n O01 C02 98T doub 10 n n C02 O03 98T sing 11 n n O03 C04 98T sing 12 n n C04 H1 98T sing 13 n n C04 H2 98T sing 14 n n C04 H3 98T sing 15 n n C06 H4 98T sing 16 n n C07 H5 98T sing 17 n n O09 H6 98T sing 18 n n C12 H7 98T sing 19 n n # _atom_sites.entry_id 7NLS _atom_sites.fract_transf_matrix[1][1] 0.005739 _atom_sites.fract_transf_matrix[1][2] 0.003314 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 98T A 1 301 1 98T LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 4 HOH HOH . D 4 HOH A 2 402 5 HOH HOH . D 4 HOH A 3 403 1 HOH HOH . D 4 HOH A 4 404 3 HOH HOH . D 4 HOH A 5 405 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 98T . . . B 2 10.204 -18.614 34.781 0.5 112.09 ? C10 98T 301 A 1 HETATM 2 O O01 98T . . . B 2 10.173 -15.669 37.815 0.5 116.93 ? O01 98T 301 A 1 HETATM 3 C C02 98T . . . B 2 10.709 -16.702 38.061 0.5 119.25 ? C02 98T 301 A 1 HETATM 4 O O03 98T . . . B 2 11.258 -16.888 39.339 0.5 121.74 ? O03 98T 301 A 1 HETATM 5 C C04 98T . . . B 2 10.946 -15.87 40.252 0.5 118.54 ? C04 98T 301 A 1 HETATM 6 C C05 98T . . . B 2 10.796 -17.806 36.99 0.5 112.57 ? C05 98T 301 A 1 HETATM 7 C C06 98T . . . B 2 11.513 -18.974 37.214 0.5 106.11 ? C06 98T 301 A 1 HETATM 8 C C07 98T . . . B 2 11.578 -19.954 36.233 0.5 103.22 ? C07 98T 301 A 1 HETATM 9 C C08 98T . . . B 2 10.928 -19.781 35.021 0.5 105.78 ? C08 98T 301 A 1 HETATM 10 O O09 98T . . . B 2 11.015 -20.793 34.056 0.5 105.01 ? O09 98T 301 A 1 HETATM 11 I I11 98T . . . B 2 9.182 -18.27 32.952 0.5 126.27 ? I11 98T 301 A 1 HETATM 12 C C12 98T . . . B 2 10.147 -17.64 35.772 0.5 113.95 ? C12 98T 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #