data_7NLY # _model_server_result.job_id UNI_boxybLMw4pbtASOcPQ _model_server_result.datetime_utc '2024-11-09 02:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7NLY # _exptl.entry_id 7NLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.581 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-1~{H}-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NLY _cell.length_a 174.94 _cell.length_b 174.94 _cell.length_c 72.96 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.96 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 72.96 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.96 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H5 Cl N2' _chem_comp.formula_weight 152.581 _chem_comp.id 98K _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-1~{H}-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C02 98K sing 1 n n C02 N03 98K sing 2 n y C02 N10 98K doub 3 n y N03 C04 98K sing 4 n y N10 C09 98K sing 5 n y C04 C09 98K doub 6 n y C04 C05 98K sing 7 n y C09 C08 98K sing 8 n y C05 C06 98K doub 9 n y C08 C07 98K doub 10 n y C06 C07 98K sing 11 n y N03 H1 98K sing 12 n n C05 H2 98K sing 13 n n C06 H3 98K sing 14 n n C07 H4 98K sing 15 n n C08 H5 98K sing 16 n n # _atom_sites.entry_id 7NLY _atom_sites.fract_transf_matrix[1][1] 0.005716 _atom_sites.fract_transf_matrix[1][2] 0.0033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 98K A 1 303 1 98K LIG . E 4 HOH A 1 401 4 HOH HOH . E 4 HOH A 2 402 10 HOH HOH . E 4 HOH A 3 403 7 HOH HOH . E 4 HOH A 4 404 13 HOH HOH . E 4 HOH A 5 405 6 HOH HOH . E 4 HOH A 6 406 18 HOH HOH . E 4 HOH A 7 407 8 HOH HOH . E 4 HOH A 8 408 9 HOH HOH . E 4 HOH A 9 409 14 HOH HOH . E 4 HOH A 10 410 2 HOH HOH . E 4 HOH A 11 411 16 HOH HOH . E 4 HOH A 12 412 5 HOH HOH . E 4 HOH A 13 413 3 HOH HOH . E 4 HOH A 14 414 17 HOH HOH . E 4 HOH A 15 415 1 HOH HOH . E 4 HOH A 16 416 15 HOH HOH . E 4 HOH A 17 417 11 HOH HOH . E 4 HOH A 18 418 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 98K . . . D 3 10.569 -19.791 33.932 0.5 84.9 ? CL 98K 303 A 1 HETATM 2 C C02 98K . . . D 3 10.774 -19.04 35.543 0.5 83.36 ? C02 98K 303 A 1 HETATM 3 N N03 98K . . . D 3 10.341 -17.83 35.871 0.5 82.84 ? N03 98K 303 A 1 HETATM 4 C C04 98K . . . D 3 10.673 -17.573 37.166 0.5 82.62 ? C04 98K 303 A 1 HETATM 5 C C05 98K . . . D 3 10.461 -16.449 38.021 0.5 82.53 ? C05 98K 303 A 1 HETATM 6 C C06 98K . . . D 3 10.919 -16.477 39.334 0.5 82.6 ? C06 98K 303 A 1 HETATM 7 C C07 98K . . . D 3 11.585 -17.615 39.81 0.5 84.47 ? C07 98K 303 A 1 HETATM 8 C C08 98K . . . D 3 11.789 -18.712 38.974 0.5 84.68 ? C08 98K 303 A 1 HETATM 9 C C09 98K . . . D 3 11.325 -18.687 37.628 0.5 83.3 ? C09 98K 303 A 1 HETATM 10 N N10 98K . . . D 3 11.374 -19.584 36.596 0.5 82.14 ? N10 98K 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #