data_7NM8 # _model_server_result.job_id SY5xJedprUnvJE0HO9m9MA _model_server_result.datetime_utc '2024-12-26 12:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NM8 # _exptl.entry_id 7NM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NM8 _cell.length_a 92.223 _cell.length_b 92.223 _cell.length_c 113.751 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -92.223 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -92.223 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 7NM8 _atom_sites.fract_transf_matrix[1][1] 0.010843 _atom_sites.fract_transf_matrix[1][2] 0.00626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP AAA 1 301 301 NDP NDP . C 3 GOL AAA 1 302 302 GOL GOL . D 4 HOH AAA 1 401 61 HOH HOH . D 4 HOH AAA 2 402 75 HOH HOH . D 4 HOH AAA 3 403 68 HOH HOH . D 4 HOH AAA 4 404 42 HOH HOH . D 4 HOH AAA 5 405 51 HOH HOH . D 4 HOH AAA 6 406 58 HOH HOH . D 4 HOH AAA 7 407 67 HOH HOH . D 4 HOH AAA 8 408 50 HOH HOH . D 4 HOH AAA 9 409 46 HOH HOH . D 4 HOH AAA 10 410 55 HOH HOH . D 4 HOH AAA 11 411 23 HOH HOH . D 4 HOH AAA 12 412 38 HOH HOH . D 4 HOH AAA 13 413 36 HOH HOH . D 4 HOH AAA 14 414 72 HOH HOH . D 4 HOH AAA 15 415 16 HOH HOH . D 4 HOH AAA 16 416 17 HOH HOH . D 4 HOH AAA 17 417 63 HOH HOH . D 4 HOH AAA 18 418 33 HOH HOH . D 4 HOH AAA 19 419 60 HOH HOH . D 4 HOH AAA 20 420 11 HOH HOH . D 4 HOH AAA 21 421 52 HOH HOH . D 4 HOH AAA 22 422 27 HOH HOH . D 4 HOH AAA 23 423 69 HOH HOH . D 4 HOH AAA 24 424 24 HOH HOH . D 4 HOH AAA 25 425 49 HOH HOH . D 4 HOH AAA 26 426 45 HOH HOH . D 4 HOH AAA 27 427 31 HOH HOH . D 4 HOH AAA 28 428 32 HOH HOH . D 4 HOH AAA 29 429 5 HOH HOH . D 4 HOH AAA 30 430 65 HOH HOH . D 4 HOH AAA 31 431 21 HOH HOH . D 4 HOH AAA 32 432 43 HOH HOH . D 4 HOH AAA 33 433 41 HOH HOH . D 4 HOH AAA 34 434 71 HOH HOH . D 4 HOH AAA 35 435 12 HOH HOH . D 4 HOH AAA 36 436 13 HOH HOH . D 4 HOH AAA 37 437 3 HOH HOH . D 4 HOH AAA 38 438 25 HOH HOH . D 4 HOH AAA 39 439 20 HOH HOH . D 4 HOH AAA 40 440 14 HOH HOH . D 4 HOH AAA 41 441 6 HOH HOH . D 4 HOH AAA 42 442 10 HOH HOH . D 4 HOH AAA 43 443 18 HOH HOH . D 4 HOH AAA 44 444 1 HOH HOH . D 4 HOH AAA 45 445 54 HOH HOH . D 4 HOH AAA 46 446 37 HOH HOH . D 4 HOH AAA 47 447 34 HOH HOH . D 4 HOH AAA 48 448 47 HOH HOH . D 4 HOH AAA 49 449 28 HOH HOH . D 4 HOH AAA 50 450 29 HOH HOH . D 4 HOH AAA 51 451 19 HOH HOH . D 4 HOH AAA 52 452 9 HOH HOH . D 4 HOH AAA 53 453 2 HOH HOH . D 4 HOH AAA 54 454 4 HOH HOH . D 4 HOH AAA 55 455 53 HOH HOH . D 4 HOH AAA 56 456 30 HOH HOH . D 4 HOH AAA 57 457 15 HOH HOH . D 4 HOH AAA 58 458 64 HOH HOH . D 4 HOH AAA 59 459 8 HOH HOH . D 4 HOH AAA 60 460 26 HOH HOH . D 4 HOH AAA 61 461 7 HOH HOH . D 4 HOH AAA 62 462 44 HOH HOH . D 4 HOH AAA 63 463 66 HOH HOH . D 4 HOH AAA 64 464 56 HOH HOH . D 4 HOH AAA 65 465 57 HOH HOH . D 4 HOH AAA 66 466 40 HOH HOH . D 4 HOH AAA 67 467 59 HOH HOH . D 4 HOH AAA 68 468 62 HOH HOH . D 4 HOH AAA 69 469 48 HOH HOH . D 4 HOH AAA 70 470 73 HOH HOH . D 4 HOH AAA 71 471 70 HOH HOH . D 4 HOH AAA 72 472 74 HOH HOH . D 4 HOH AAA 73 473 76 HOH HOH . D 4 HOH AAA 74 474 39 HOH HOH . D 4 HOH AAA 75 475 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -29.594 19.737 12.01 1 43.83 ? PA NDP 301 AAA 1 HETATM 2 O O1A NDP . . . B 2 -30.661 20.69 12.387 1 43.35 ? O1A NDP 301 AAA 1 HETATM 3 O O2A NDP . . . B 2 -28.635 19.043 12.878 1 43.21 ? O2A NDP 301 AAA 1 HETATM 4 O O5B NDP . . . B 2 -28.762 20.393 10.773 1 43.53 ? O5B NDP 301 AAA 1 HETATM 5 C C5B NDP . . . B 2 -29.565 21.172 9.838 1 43.15 ? C5B NDP 301 AAA 1 HETATM 6 C C4B NDP . . . B 2 -28.679 21.591 8.686 1 42.24 ? C4B NDP 301 AAA 1 HETATM 7 O O4B NDP . . . B 2 -29.488 22.231 7.678 1 40.17 ? O4B NDP 301 AAA 1 HETATM 8 C C3B NDP . . . B 2 -27.577 22.595 9.051 1 40.14 ? C3B NDP 301 AAA 1 HETATM 9 O O3B NDP . . . B 2 -26.408 22.407 8.259 1 45.77 ? O3B NDP 301 AAA 1 HETATM 10 C C2B NDP . . . B 2 -28.312 23.906 8.851 1 40.1 ? C2B NDP 301 AAA 1 HETATM 11 O O2B NDP . . . B 2 -27.321 24.943 8.707 1 46.98 ? O2B NDP 301 AAA 1 HETATM 12 C C1B NDP . . . B 2 -29.108 23.588 7.589 1 41.53 ? C1B NDP 301 AAA 1 HETATM 13 N N9A NDP . . . B 2 -30.311 24.391 7.487 1 37.71 ? N9A NDP 301 AAA 1 HETATM 14 C C8A NDP . . . B 2 -31.369 24.416 8.354 1 38.73 ? C8A NDP 301 AAA 1 HETATM 15 N N7A NDP . . . B 2 -32.293 25.273 8.004 1 40.85 ? N7A NDP 301 AAA 1 HETATM 16 C C5A NDP . . . B 2 -31.763 25.905 6.884 1 35.91 ? C5A NDP 301 AAA 1 HETATM 17 C C6A NDP . . . B 2 -32.225 26.966 6.075 1 38.49 ? C6A NDP 301 AAA 1 HETATM 18 N N6A NDP . . . B 2 -33.391 27.592 6.222 1 43.98 ? N6A NDP 301 AAA 1 HETATM 19 N N1A NDP . . . B 2 -31.431 27.352 5.051 1 38.61 ? N1A NDP 301 AAA 1 HETATM 20 C C2A NDP . . . B 2 -30.262 26.717 4.876 1 38.06 ? C2A NDP 301 AAA 1 HETATM 21 N N3A NDP . . . B 2 -29.72 25.726 5.57 1 38.87 ? N3A NDP 301 AAA 1 HETATM 22 C C4A NDP . . . B 2 -30.542 25.365 6.569 1 36.94 ? C4A NDP 301 AAA 1 HETATM 23 O O3 NDP . . . B 2 -30.474 18.634 11.219 1 45.63 ? O3 NDP 301 AAA 1 HETATM 24 P PN NDP . . . B 2 -30.435 17.041 11.179 1 44.32 ? PN NDP 301 AAA 1 HETATM 25 O O1N NDP . . . B 2 -29.081 16.477 10.99 1 41.32 ? O1N NDP 301 AAA 1 HETATM 26 O O2N NDP . . . B 2 -31.169 16.572 12.406 1 43.81 ? O2N NDP 301 AAA 1 HETATM 27 O O5D NDP . . . B 2 -31.39 16.753 9.906 1 42.96 ? O5D NDP 301 AAA 1 HETATM 28 C C5D NDP . . . B 2 -30.897 16.505 8.56 1 38.92 ? C5D NDP 301 AAA 1 HETATM 29 C C4D NDP . . . B 2 -32.082 16.102 7.727 1 35.48 ? C4D NDP 301 AAA 1 HETATM 30 O O4D NDP . . . B 2 -32.598 14.849 8.267 1 38.08 ? O4D NDP 301 AAA 1 HETATM 31 C C3D NDP . . . B 2 -33.259 17.088 7.752 1 35.53 ? C3D NDP 301 AAA 1 HETATM 32 O O3D NDP . . . B 2 -33.871 17.177 6.47 1 37.92 ? O3D NDP 301 AAA 1 HETATM 33 C C2D NDP . . . B 2 -34.175 16.446 8.795 1 38.31 ? C2D NDP 301 AAA 1 HETATM 34 O O2D NDP . . . B 2 -35.537 16.782 8.615 1 36.87 ? O2D NDP 301 AAA 1 HETATM 35 C C1D NDP . . . B 2 -33.96 14.966 8.545 1 37.05 ? C1D NDP 301 AAA 1 HETATM 36 N N1N NDP . . . B 2 -34.341 14.089 9.705 1 41.78 ? N1N NDP 301 AAA 1 HETATM 37 C C2N NDP . . . B 2 -33.65 14.113 10.897 1 43.52 ? C2N NDP 301 AAA 1 HETATM 38 C C3N NDP . . . B 2 -34.066 13.364 11.979 1 45.09 ? C3N NDP 301 AAA 1 HETATM 39 C C7N NDP . . . B 2 -33.308 13.341 13.251 1 53.47 ? C7N NDP 301 AAA 1 HETATM 40 O O7N NDP . . . B 2 -33.715 12.592 14.158 1 53.19 ? O7N NDP 301 AAA 1 HETATM 41 N N7N NDP . . . B 2 -32.223 14.094 13.398 1 47.89 ? N7N NDP 301 AAA 1 HETATM 42 C C4N NDP . . . B 2 -35.319 12.574 11.869 1 44.32 ? C4N NDP 301 AAA 1 HETATM 43 C C5N NDP . . . B 2 -35.778 12.338 10.492 1 48.19 ? C5N NDP 301 AAA 1 HETATM 44 C C6N NDP . . . B 2 -35.406 13.176 9.531 1 45.72 ? C6N NDP 301 AAA 1 HETATM 45 P P2B NDP . . . B 2 -27.68 26.392 9.379 1 48.09 ? P2B NDP 301 AAA 1 HETATM 46 O O1X NDP . . . B 2 -28.008 26.115 10.821 1 46.39 ? O1X NDP 301 AAA 1 HETATM 47 O O2X NDP . . . B 2 -28.842 26.988 8.648 1 47.67 ? O2X NDP 301 AAA 1 HETATM 48 O O3X NDP . . . B 2 -26.374 27.211 9.241 1 48.63 ? O3X NDP 301 AAA 1 HETATM 49 H H51A NDP . . . B 2 -29.926 21.972 10.296 1 43.15 ? H51A NDP 301 AAA 1 HETATM 50 H H52A NDP . . . B 2 -30.316 20.62 9.504 1 43.15 ? H52A NDP 301 AAA 1 HETATM 51 H H4B NDP . . . B 2 -28.272 20.788 8.296 1 42.24 ? H4B NDP 301 AAA 1 HETATM 52 H H3B NDP . . . B 2 -27.302 22.497 9.999 1 40.14 ? H3B NDP 301 AAA 1 HETATM 53 H HO3A NDP . . . B 2 -26.296 23.093 7.771 0 45.77 ? HO3A NDP 301 AAA 1 HETATM 54 H H2B NDP . . . B 2 -28.913 24.109 9.604 1 40.1 ? H2B NDP 301 AAA 1 HETATM 55 H H1B NDP . . . B 2 -28.534 23.72 6.8 1 41.53 ? H1B NDP 301 AAA 1 HETATM 56 H H8A NDP . . . B 2 -31.429 23.875 9.123 1 38.73 ? H8A NDP 301 AAA 1 HETATM 57 H H61A NDP . . . B 2 -33.616 28.229 5.663 0 43.98 ? H61A NDP 301 AAA 1 HETATM 58 H H62A NDP . . . B 2 -33.928 27.364 6.877 0 43.98 ? H62A NDP 301 AAA 1 HETATM 59 H H2A NDP . . . B 2 -29.745 27.033 4.15 1 38.06 ? H2A NDP 301 AAA 1 HETATM 60 H H51N NDP . . . B 2 -30.219 15.785 8.578 1 38.92 ? H51N NDP 301 AAA 1 HETATM 61 H H52N NDP . . . B 2 -30.476 17.325 8.2 1 38.92 ? H52N NDP 301 AAA 1 HETATM 62 H H4D NDP . . . B 2 -31.776 15.957 6.806 1 35.48 ? H4D NDP 301 AAA 1 HETATM 63 H H3D NDP . . . B 2 -32.956 17.982 8.057 1 35.53 ? H3D NDP 301 AAA 1 HETATM 64 H HO3N NDP . . . B 2 -34.516 17.727 6.513 0 37.92 ? HO3N NDP 301 AAA 1 HETATM 65 H H2D NDP . . . B 2 -33.891 16.705 9.705 1 38.31 ? H2D NDP 301 AAA 1 HETATM 66 H HO2N NDP . . . B 2 -35.999 16.401 9.217 0 36.87 ? HO2N NDP 301 AAA 1 HETATM 67 H H1D NDP . . . B 2 -34.48 14.679 7.758 1 37.05 ? H1D NDP 301 AAA 1 HETATM 68 H H2N NDP . . . B 2 -32.882 14.649 10.975 1 43.52 ? H2N NDP 301 AAA 1 HETATM 69 H H71N NDP . . . B 2 -31.947 14.614 12.735 0 47.89 ? H71N NDP 301 AAA 1 HETATM 70 H H72N NDP . . . B 2 -31.769 14.08 14.16 0 47.89 ? H72N NDP 301 AAA 1 HETATM 71 H H41N NDP . . . B 2 -36.036 13.052 12.335 1 44.32 ? H41N NDP 301 AAA 1 HETATM 72 H H42N NDP . . . B 2 -35.176 11.696 12.281 1 44.32 ? H42N NDP 301 AAA 1 HETATM 73 H H5N NDP . . . B 2 -36.339 11.593 10.277 1 48.19 ? H5N NDP 301 AAA 1 HETATM 74 H H6N NDP . . . B 2 -35.867 13.159 8.711 1 45.72 ? H6N NDP 301 AAA 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #