data_7NM8
#
_model_server_result.job_id            nbxX66mVgCJBUaeZHB-wuw 
_model_server_result.datetime_utc      '2024-12-26 13:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nm8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7NM8 
#
_exptl.entry_id    7NM8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7NM8 
_cell.length_a            92.223 
_cell.length_b            92.223 
_cell.length_c            113.751 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NM8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -92.223 0 0 
3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -92.223 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     7NM8 
_atom_sites.fract_transf_matrix[1][1]    0.010843 
_atom_sites.fract_transf_matrix[1][2]    0.00626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008791 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP AAA 1 301 301 NDP NDP . 
C 3 GOL AAA 1 302 302 GOL GOL . 
D 4 HOH AAA 1 401 61 HOH HOH . 
D 4 HOH AAA 2 402 75 HOH HOH . 
D 4 HOH AAA 3 403 68 HOH HOH . 
D 4 HOH AAA 4 404 42 HOH HOH . 
D 4 HOH AAA 5 405 51 HOH HOH . 
D 4 HOH AAA 6 406 58 HOH HOH . 
D 4 HOH AAA 7 407 67 HOH HOH . 
D 4 HOH AAA 8 408 50 HOH HOH . 
D 4 HOH AAA 9 409 46 HOH HOH . 
D 4 HOH AAA 10 410 55 HOH HOH . 
D 4 HOH AAA 11 411 23 HOH HOH . 
D 4 HOH AAA 12 412 38 HOH HOH . 
D 4 HOH AAA 13 413 36 HOH HOH . 
D 4 HOH AAA 14 414 72 HOH HOH . 
D 4 HOH AAA 15 415 16 HOH HOH . 
D 4 HOH AAA 16 416 17 HOH HOH . 
D 4 HOH AAA 17 417 63 HOH HOH . 
D 4 HOH AAA 18 418 33 HOH HOH . 
D 4 HOH AAA 19 419 60 HOH HOH . 
D 4 HOH AAA 20 420 11 HOH HOH . 
D 4 HOH AAA 21 421 52 HOH HOH . 
D 4 HOH AAA 22 422 27 HOH HOH . 
D 4 HOH AAA 23 423 69 HOH HOH . 
D 4 HOH AAA 24 424 24 HOH HOH . 
D 4 HOH AAA 25 425 49 HOH HOH . 
D 4 HOH AAA 26 426 45 HOH HOH . 
D 4 HOH AAA 27 427 31 HOH HOH . 
D 4 HOH AAA 28 428 32 HOH HOH . 
D 4 HOH AAA 29 429 5 HOH HOH . 
D 4 HOH AAA 30 430 65 HOH HOH . 
D 4 HOH AAA 31 431 21 HOH HOH . 
D 4 HOH AAA 32 432 43 HOH HOH . 
D 4 HOH AAA 33 433 41 HOH HOH . 
D 4 HOH AAA 34 434 71 HOH HOH . 
D 4 HOH AAA 35 435 12 HOH HOH . 
D 4 HOH AAA 36 436 13 HOH HOH . 
D 4 HOH AAA 37 437 3 HOH HOH . 
D 4 HOH AAA 38 438 25 HOH HOH . 
D 4 HOH AAA 39 439 20 HOH HOH . 
D 4 HOH AAA 40 440 14 HOH HOH . 
D 4 HOH AAA 41 441 6 HOH HOH . 
D 4 HOH AAA 42 442 10 HOH HOH . 
D 4 HOH AAA 43 443 18 HOH HOH . 
D 4 HOH AAA 44 444 1 HOH HOH . 
D 4 HOH AAA 45 445 54 HOH HOH . 
D 4 HOH AAA 46 446 37 HOH HOH . 
D 4 HOH AAA 47 447 34 HOH HOH . 
D 4 HOH AAA 48 448 47 HOH HOH . 
D 4 HOH AAA 49 449 28 HOH HOH . 
D 4 HOH AAA 50 450 29 HOH HOH . 
D 4 HOH AAA 51 451 19 HOH HOH . 
D 4 HOH AAA 52 452 9 HOH HOH . 
D 4 HOH AAA 53 453 2 HOH HOH . 
D 4 HOH AAA 54 454 4 HOH HOH . 
D 4 HOH AAA 55 455 53 HOH HOH . 
D 4 HOH AAA 56 456 30 HOH HOH . 
D 4 HOH AAA 57 457 15 HOH HOH . 
D 4 HOH AAA 58 458 64 HOH HOH . 
D 4 HOH AAA 59 459 8 HOH HOH . 
D 4 HOH AAA 60 460 26 HOH HOH . 
D 4 HOH AAA 61 461 7 HOH HOH . 
D 4 HOH AAA 62 462 44 HOH HOH . 
D 4 HOH AAA 63 463 66 HOH HOH . 
D 4 HOH AAA 64 464 56 HOH HOH . 
D 4 HOH AAA 65 465 57 HOH HOH . 
D 4 HOH AAA 66 466 40 HOH HOH . 
D 4 HOH AAA 67 467 59 HOH HOH . 
D 4 HOH AAA 68 468 62 HOH HOH . 
D 4 HOH AAA 69 469 48 HOH HOH . 
D 4 HOH AAA 70 470 73 HOH HOH . 
D 4 HOH AAA 71 471 70 HOH HOH . 
D 4 HOH AAA 72 472 74 HOH HOH . 
D 4 HOH AAA 73 473 76 HOH HOH . 
D 4 HOH AAA 74 474 39 HOH HOH . 
D 4 HOH AAA 75 475 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -45.236 9.719 0.469 0.5 42.65 ? C1 GOL 302 AAA 1 
HETATM 2 O O1 GOL . . . C 3 -44.402 8.961 1.336 0.5 43.78 ? O1 GOL 302 AAA 1 
HETATM 3 C C2 GOL . . . C 3 -45.887 8.847 -0.583 0.5 47.41 ? C2 GOL 302 AAA 1 
HETATM 4 O O2 GOL . . . C 3 -46.111 7.575 0 0.5 53.16 ? O2 GOL 302 AAA 1 
HETATM 5 C C3 GOL . . . C 3 -47.144 9.467 -1.161 0.5 41.09 ? C3 GOL 302 AAA 1 
HETATM 6 O O3 GOL . . . C 3 -48.257 8.578 -1.11 0.5 41.96 ? O3 GOL 302 AAA 1 
HETATM 7 H H11 GOL . . . C 3 -44.691 10.408 0.013 0.5 42.65 ? H11 GOL 302 AAA 1 
HETATM 8 H H12 GOL . . . C 3 -45.948 10.154 1.001 0.5 42.65 ? H12 GOL 302 AAA 1 
HETATM 9 H HO1 GOL . . . C 3 -44.062 9.487 1.904 0 43.78 ? HO1 GOL 302 AAA 1 
HETATM 10 H H2 GOL . . . C 3 -45.24 8.709 -1.319 0.5 47.41 ? H2 GOL 302 AAA 1 
HETATM 11 H HO2 GOL . . . C 3 -47.012 7.429 -0.112 0 53.16 ? HO2 GOL 302 AAA 1 
HETATM 12 H H31 GOL . . . C 3 -46.984 9.707 -2.108 0.5 41.09 ? H31 GOL 302 AAA 1 
HETATM 13 H H32 GOL . . . C 3 -47.374 10.28 -0.645 0.5 41.09 ? H32 GOL 302 AAA 1 
HETATM 14 H HO3 GOL . . . C 3 -48.001 7.853 -0.758 0.5 41.96 ? HO3 GOL 302 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#