data_7NM9
#
_model_server_result.job_id            Zvl1hXKSWPnbKId8eO8MZw 
_model_server_result.datetime_utc      '2024-11-12 23:41:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    7NM9 
#
_exptl.entry_id    7NM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NM9 
_cell.length_a            82.586 
_cell.length_b            112.381 
_cell.length_c            62.586 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A NZ LYS 127 A LYS 122 1_555 C C13 S9E . A S9E 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.43 ? 
covale ? covale6 A NZ LYS 127 A LYS 122 1_555 C C13 S9E . A S9E 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 A NZ LYS 127 A LYS 122 1_555 C C13 S9E . A S9E 301 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.43 ? 
covale ? covale8 B C GLY 6 P GLY 44 1_555 B N SEP 7 P SEP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B C SEP 7 P SEP 45 1_555 B N ILE 8 P ILE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 251 n n 
C1 C2 PEG sing 252 n n 
C1 H11 PEG sing 253 n n 
C1 H12 PEG sing 254 n n 
O1 HO1 PEG sing 255 n n 
C2 O2 PEG sing 256 n n 
C2 H21 PEG sing 257 n n 
C2 H22 PEG sing 258 n n 
O2 C3 PEG sing 259 n n 
C3 C4 PEG sing 260 n n 
C3 H31 PEG sing 261 n n 
C3 H32 PEG sing 262 n n 
C4 O4 PEG sing 263 n n 
C4 H41 PEG sing 264 n n 
C4 H42 PEG sing 265 n n 
O4 HO4 PEG sing 266 n n 
#
_atom_sites.entry_id                     7NM9 
_atom_sites.fract_transf_matrix[1][1]    0.012109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 S9E A 1 301 1 S9E LIG . 
D 4 PEG A 1 302 1 PEG PEG . 
E 5 HOH A 1 401 25 HOH HOH . 
E 5 HOH A 2 402 75 HOH HOH . 
E 5 HOH A 3 403 194 HOH HOH . 
E 5 HOH A 4 404 164 HOH HOH . 
E 5 HOH A 5 405 79 HOH HOH . 
E 5 HOH A 6 406 122 HOH HOH . 
E 5 HOH A 7 407 68 HOH HOH . 
E 5 HOH A 8 408 67 HOH HOH . 
E 5 HOH A 9 409 180 HOH HOH . 
E 5 HOH A 10 410 115 HOH HOH . 
E 5 HOH A 11 411 101 HOH HOH . 
E 5 HOH A 12 412 135 HOH HOH . 
E 5 HOH A 13 413 52 HOH HOH . 
E 5 HOH A 14 414 66 HOH HOH . 
E 5 HOH A 15 415 111 HOH HOH . 
E 5 HOH A 16 416 46 HOH HOH . 
E 5 HOH A 17 417 125 HOH HOH . 
E 5 HOH A 18 418 59 HOH HOH . 
E 5 HOH A 19 419 16 HOH HOH . 
E 5 HOH A 20 420 45 HOH HOH . 
E 5 HOH A 21 421 10 HOH HOH . 
E 5 HOH A 22 422 134 HOH HOH . 
E 5 HOH A 23 423 131 HOH HOH . 
E 5 HOH A 24 424 116 HOH HOH . 
E 5 HOH A 25 425 44 HOH HOH . 
E 5 HOH A 26 426 198 HOH HOH . 
E 5 HOH A 27 427 5 HOH HOH . 
E 5 HOH A 28 428 12 HOH HOH . 
E 5 HOH A 29 429 57 HOH HOH . 
E 5 HOH A 30 430 82 HOH HOH . 
E 5 HOH A 31 431 26 HOH HOH . 
E 5 HOH A 32 432 118 HOH HOH . 
E 5 HOH A 33 433 171 HOH HOH . 
E 5 HOH A 34 434 35 HOH HOH . 
E 5 HOH A 35 435 154 HOH HOH . 
E 5 HOH A 36 436 37 HOH HOH . 
E 5 HOH A 37 437 144 HOH HOH . 
E 5 HOH A 38 438 88 HOH HOH . 
E 5 HOH A 39 439 36 HOH HOH . 
E 5 HOH A 40 440 7 HOH HOH . 
E 5 HOH A 41 441 110 HOH HOH . 
E 5 HOH A 42 442 24 HOH HOH . 
E 5 HOH A 43 443 90 HOH HOH . 
E 5 HOH A 44 444 58 HOH HOH . 
E 5 HOH A 45 445 6 HOH HOH . 
E 5 HOH A 46 446 38 HOH HOH . 
E 5 HOH A 47 447 104 HOH HOH . 
E 5 HOH A 48 448 81 HOH HOH . 
E 5 HOH A 49 449 3 HOH HOH . 
E 5 HOH A 50 450 55 HOH HOH . 
E 5 HOH A 51 451 73 HOH HOH . 
E 5 HOH A 52 452 138 HOH HOH . 
E 5 HOH A 53 453 80 HOH HOH . 
E 5 HOH A 54 454 98 HOH HOH . 
E 5 HOH A 55 455 119 HOH HOH . 
E 5 HOH A 56 456 165 HOH HOH . 
E 5 HOH A 57 457 48 HOH HOH . 
E 5 HOH A 58 458 160 HOH HOH . 
E 5 HOH A 59 459 34 HOH HOH . 
E 5 HOH A 60 460 127 HOH HOH . 
E 5 HOH A 61 461 186 HOH HOH . 
E 5 HOH A 62 462 184 HOH HOH . 
E 5 HOH A 63 463 109 HOH HOH . 
E 5 HOH A 64 464 18 HOH HOH . 
E 5 HOH A 65 465 190 HOH HOH . 
E 5 HOH A 66 466 20 HOH HOH . 
E 5 HOH A 67 467 197 HOH HOH . 
E 5 HOH A 68 468 92 HOH HOH . 
E 5 HOH A 69 469 152 HOH HOH . 
E 5 HOH A 70 470 22 HOH HOH . 
E 5 HOH A 71 471 188 HOH HOH . 
E 5 HOH A 72 472 32 HOH HOH . 
E 5 HOH A 73 473 53 HOH HOH . 
E 5 HOH A 74 474 87 HOH HOH . 
E 5 HOH A 75 475 108 HOH HOH . 
E 5 HOH A 76 476 47 HOH HOH . 
E 5 HOH A 77 477 77 HOH HOH . 
E 5 HOH A 78 478 159 HOH HOH . 
E 5 HOH A 79 479 54 HOH HOH . 
E 5 HOH A 80 480 33 HOH HOH . 
E 5 HOH A 81 481 50 HOH HOH . 
E 5 HOH A 82 482 129 HOH HOH . 
E 5 HOH A 83 483 120 HOH HOH . 
E 5 HOH A 84 484 106 HOH HOH . 
E 5 HOH A 85 485 39 HOH HOH . 
E 5 HOH A 86 486 13 HOH HOH . 
E 5 HOH A 87 487 95 HOH HOH . 
E 5 HOH A 88 488 21 HOH HOH . 
E 5 HOH A 89 489 40 HOH HOH . 
E 5 HOH A 90 490 11 HOH HOH . 
E 5 HOH A 91 491 114 HOH HOH . 
E 5 HOH A 92 492 8 HOH HOH . 
E 5 HOH A 93 493 121 HOH HOH . 
E 5 HOH A 94 494 41 HOH HOH . 
E 5 HOH A 95 495 27 HOH HOH . 
E 5 HOH A 96 496 60 HOH HOH . 
E 5 HOH A 97 497 191 HOH HOH . 
E 5 HOH A 98 498 83 HOH HOH . 
E 5 HOH A 99 499 85 HOH HOH . 
E 5 HOH A 100 500 62 HOH HOH . 
E 5 HOH A 101 501 102 HOH HOH . 
E 5 HOH A 102 502 30 HOH HOH . 
E 5 HOH A 103 503 19 HOH HOH . 
E 5 HOH A 104 504 72 HOH HOH . 
E 5 HOH A 105 505 136 HOH HOH . 
E 5 HOH A 106 506 187 HOH HOH . 
E 5 HOH A 107 507 107 HOH HOH . 
E 5 HOH A 108 508 94 HOH HOH . 
E 5 HOH A 109 509 155 HOH HOH . 
E 5 HOH A 110 510 63 HOH HOH . 
E 5 HOH A 111 511 43 HOH HOH . 
E 5 HOH A 112 512 168 HOH HOH . 
E 5 HOH A 113 513 133 HOH HOH . 
E 5 HOH A 114 514 117 HOH HOH . 
E 5 HOH A 115 515 86 HOH HOH . 
E 5 HOH A 116 516 42 HOH HOH . 
E 5 HOH A 117 517 69 HOH HOH . 
E 5 HOH A 118 518 112 HOH HOH . 
E 5 HOH A 119 519 14 HOH HOH . 
E 5 HOH A 120 520 76 HOH HOH . 
E 5 HOH A 121 521 61 HOH HOH . 
E 5 HOH A 122 522 163 HOH HOH . 
E 5 HOH A 123 523 96 HOH HOH . 
E 5 HOH A 124 524 170 HOH HOH . 
E 5 HOH A 125 525 9 HOH HOH . 
E 5 HOH A 126 526 56 HOH HOH . 
E 5 HOH A 127 527 78 HOH HOH . 
E 5 HOH A 128 528 71 HOH HOH . 
E 5 HOH A 129 529 173 HOH HOH . 
E 5 HOH A 130 530 185 HOH HOH . 
E 5 HOH A 131 531 4 HOH HOH . 
E 5 HOH A 132 532 158 HOH HOH . 
E 5 HOH A 133 533 51 HOH HOH . 
E 5 HOH A 134 534 126 HOH HOH . 
E 5 HOH A 135 535 29 HOH HOH . 
E 5 HOH A 136 536 93 HOH HOH . 
E 5 HOH A 137 537 84 HOH HOH . 
E 5 HOH A 138 538 97 HOH HOH . 
E 5 HOH A 139 539 199 HOH HOH . 
E 5 HOH A 140 540 181 HOH HOH . 
E 5 HOH A 141 541 147 HOH HOH . 
E 5 HOH A 142 542 65 HOH HOH . 
E 5 HOH A 143 543 70 HOH HOH . 
E 5 HOH A 144 544 123 HOH HOH . 
E 5 HOH A 145 545 105 HOH HOH . 
E 5 HOH A 146 546 189 HOH HOH . 
E 5 HOH A 147 547 143 HOH HOH . 
E 5 HOH A 148 548 124 HOH HOH . 
E 5 HOH A 149 549 161 HOH HOH . 
E 5 HOH A 150 550 157 HOH HOH . 
E 5 HOH A 151 551 195 HOH HOH . 
E 5 HOH A 152 552 64 HOH HOH . 
E 5 HOH A 153 553 23 HOH HOH . 
E 5 HOH A 154 554 99 HOH HOH . 
E 5 HOH A 155 555 208 HOH HOH . 
E 5 HOH A 156 556 132 HOH HOH . 
E 5 HOH A 157 557 113 HOH HOH . 
E 5 HOH A 158 558 100 HOH HOH . 
E 5 HOH A 159 559 150 HOH HOH . 
E 5 HOH A 160 560 142 HOH HOH . 
E 5 HOH A 161 561 179 HOH HOH . 
E 5 HOH A 162 562 196 HOH HOH . 
E 5 HOH A 163 563 89 HOH HOH . 
E 5 HOH A 164 564 17 HOH HOH . 
E 5 HOH A 165 565 151 HOH HOH . 
E 5 HOH A 166 566 146 HOH HOH . 
E 5 HOH A 167 567 148 HOH HOH . 
E 5 HOH A 168 568 192 HOH HOH . 
E 5 HOH A 169 569 193 HOH HOH . 
E 5 HOH A 170 570 28 HOH HOH . 
E 5 HOH A 171 571 182 HOH HOH . 
E 5 HOH A 172 572 141 HOH HOH . 
E 5 HOH A 173 573 204 HOH HOH . 
E 5 HOH A 174 574 207 HOH HOH . 
E 5 HOH A 175 575 183 HOH HOH . 
F 5 HOH P 1 101 130 HOH HOH . 
F 5 HOH P 2 102 74 HOH HOH . 
F 5 HOH P 3 103 15 HOH HOH . 
F 5 HOH P 4 104 128 HOH HOH . 
F 5 HOH P 5 105 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 4 35.956 5.14 5.788 1 29.68 ? C1 PEG 302 A 1 
HETATM 2 O O1 PEG . . . D 4 35.949 6.084 6.849 1 22.38 ? O1 PEG 302 A 1 
HETATM 3 C C2 PEG . . . D 4 35.142 5.609 4.621 1 38.69 ? C2 PEG 302 A 1 
HETATM 4 O O2 PEG . . . D 4 34.093 4.685 4.353 1 40.26 ? O2 PEG 302 A 1 
HETATM 5 C C3 PEG . . . D 4 33.086 5.208 3.492 1 25.52 ? C3 PEG 302 A 1 
HETATM 6 C C4 PEG . . . D 4 33.716 5.901 2.32 1 40.37 ? C4 PEG 302 A 1 
HETATM 7 O O4 PEG . . . D 4 33.111 7.159 2.06 1 26.9 ? O4 PEG 302 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#