data_7NMC # _model_server_result.job_id e3yprrPxAc70rrnXRNHbmQ _model_server_result.datetime_utc '2024-11-21 23:43:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 7NMC # _exptl.entry_id 7NMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.023 _cell.angle_gamma 90 _cell.entry_id 7NMC _cell.length_a 54.63 _cell.length_b 28.871 _cell.length_c 67.508 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 81 _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 80 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.968 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7NMC _atom_sites.fract_transf_matrix[1][1] 0.018305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003899 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL AAA 1 100 100 GOL GOL . C 3 PGE AAA 1 101 101 PGE PGE . D 2 GOL AAA 1 102 102 GOL GOL . E 4 HOH AAA 1 201 238 HOH HOH . E 4 HOH AAA 2 202 113 HOH HOH . E 4 HOH AAA 3 203 176 HOH HOH . E 4 HOH AAA 4 204 244 HOH HOH . E 4 HOH AAA 5 205 251 HOH HOH . E 4 HOH AAA 6 206 117 HOH HOH . E 4 HOH AAA 7 207 167 HOH HOH . E 4 HOH AAA 8 208 214 HOH HOH . E 4 HOH AAA 9 209 143 HOH HOH . E 4 HOH AAA 10 210 205 HOH HOH . E 4 HOH AAA 11 211 132 HOH HOH . E 4 HOH AAA 12 212 194 HOH HOH . E 4 HOH AAA 13 213 217 HOH HOH . E 4 HOH AAA 14 214 151 HOH HOH . E 4 HOH AAA 15 215 155 HOH HOH . E 4 HOH AAA 16 216 160 HOH HOH . E 4 HOH AAA 17 217 249 HOH HOH . E 4 HOH AAA 18 218 140 HOH HOH . E 4 HOH AAA 19 219 142 HOH HOH . E 4 HOH AAA 20 220 116 HOH HOH . E 4 HOH AAA 21 221 241 HOH HOH . E 4 HOH AAA 22 222 221 HOH HOH . E 4 HOH AAA 23 223 159 HOH HOH . E 4 HOH AAA 24 224 180 HOH HOH . E 4 HOH AAA 25 225 177 HOH HOH . E 4 HOH AAA 26 226 109 HOH HOH . E 4 HOH AAA 27 227 138 HOH HOH . E 4 HOH AAA 28 228 233 HOH HOH . E 4 HOH AAA 29 229 135 HOH HOH . E 4 HOH AAA 30 230 165 HOH HOH . E 4 HOH AAA 31 231 224 HOH HOH . E 4 HOH AAA 32 232 106 HOH HOH . E 4 HOH AAA 33 233 183 HOH HOH . E 4 HOH AAA 34 234 203 HOH HOH . E 4 HOH AAA 35 235 252 HOH HOH . E 4 HOH AAA 36 236 139 HOH HOH . E 4 HOH AAA 37 237 258 HOH HOH . E 4 HOH AAA 38 238 112 HOH HOH . E 4 HOH AAA 39 239 108 HOH HOH . E 4 HOH AAA 40 240 104 HOH HOH . E 4 HOH AAA 41 241 234 HOH HOH . E 4 HOH AAA 42 242 232 HOH HOH . E 4 HOH AAA 43 243 195 HOH HOH . E 4 HOH AAA 44 244 127 HOH HOH . E 4 HOH AAA 45 245 128 HOH HOH . E 4 HOH AAA 46 246 206 HOH HOH . E 4 HOH AAA 47 247 120 HOH HOH . E 4 HOH AAA 48 248 220 HOH HOH . E 4 HOH AAA 49 249 129 HOH HOH . E 4 HOH AAA 50 250 219 HOH HOH . E 4 HOH AAA 51 251 126 HOH HOH . E 4 HOH AAA 52 252 114 HOH HOH . E 4 HOH AAA 53 253 162 HOH HOH . E 4 HOH AAA 54 254 148 HOH HOH . E 4 HOH AAA 55 255 111 HOH HOH . E 4 HOH AAA 56 256 125 HOH HOH . E 4 HOH AAA 57 257 103 HOH HOH . E 4 HOH AAA 58 258 222 HOH HOH . E 4 HOH AAA 59 259 235 HOH HOH . E 4 HOH AAA 60 260 161 HOH HOH . E 4 HOH AAA 61 261 134 HOH HOH . E 4 HOH AAA 62 262 123 HOH HOH . E 4 HOH AAA 63 263 253 HOH HOH . E 4 HOH AAA 64 264 118 HOH HOH . E 4 HOH AAA 65 265 172 HOH HOH . E 4 HOH AAA 66 266 226 HOH HOH . E 4 HOH AAA 67 267 179 HOH HOH . E 4 HOH AAA 68 268 144 HOH HOH . E 4 HOH AAA 69 269 156 HOH HOH . E 4 HOH AAA 70 270 171 HOH HOH . E 4 HOH AAA 71 271 107 HOH HOH . E 4 HOH AAA 72 272 212 HOH HOH . E 4 HOH AAA 73 273 190 HOH HOH . E 4 HOH AAA 74 274 131 HOH HOH . E 4 HOH AAA 75 275 157 HOH HOH . E 4 HOH AAA 76 276 150 HOH HOH . E 4 HOH AAA 77 277 246 HOH HOH . E 4 HOH AAA 78 278 164 HOH HOH . E 4 HOH AAA 79 279 137 HOH HOH . E 4 HOH AAA 80 280 105 HOH HOH . E 4 HOH AAA 81 281 255 HOH HOH . E 4 HOH AAA 82 282 191 HOH HOH . E 4 HOH AAA 83 283 202 HOH HOH . E 4 HOH AAA 84 284 133 HOH HOH . E 4 HOH AAA 85 285 110 HOH HOH . E 4 HOH AAA 86 286 130 HOH HOH . E 4 HOH AAA 87 287 225 HOH HOH . E 4 HOH AAA 88 288 168 HOH HOH . E 4 HOH AAA 89 289 149 HOH HOH . E 4 HOH AAA 90 290 175 HOH HOH . E 4 HOH AAA 91 291 136 HOH HOH . E 4 HOH AAA 92 292 121 HOH HOH . E 4 HOH AAA 93 293 146 HOH HOH . E 4 HOH AAA 94 294 119 HOH HOH . E 4 HOH AAA 95 295 158 HOH HOH . E 4 HOH AAA 96 296 261 HOH HOH . E 4 HOH AAA 97 297 204 HOH HOH . E 4 HOH AAA 98 298 247 HOH HOH . E 4 HOH AAA 99 299 174 HOH HOH . E 4 HOH AAA 100 300 154 HOH HOH . E 4 HOH AAA 101 301 178 HOH HOH . E 4 HOH AAA 102 302 216 HOH HOH . E 4 HOH AAA 103 303 186 HOH HOH . E 4 HOH AAA 104 304 122 HOH HOH . E 4 HOH AAA 105 305 115 HOH HOH . E 4 HOH AAA 106 306 231 HOH HOH . E 4 HOH AAA 107 307 218 HOH HOH . E 4 HOH AAA 108 308 124 HOH HOH . E 4 HOH AAA 109 309 207 HOH HOH . E 4 HOH AAA 110 310 145 HOH HOH . E 4 HOH AAA 111 311 248 HOH HOH . E 4 HOH AAA 112 312 240 HOH HOH . E 4 HOH AAA 113 313 223 HOH HOH . E 4 HOH AAA 114 314 185 HOH HOH . E 4 HOH AAA 115 315 189 HOH HOH . E 4 HOH AAA 116 316 243 HOH HOH . E 4 HOH AAA 117 317 262 HOH HOH . E 4 HOH AAA 118 318 254 HOH HOH . E 4 HOH AAA 119 319 215 HOH HOH . E 4 HOH AAA 120 320 242 HOH HOH . E 4 HOH AAA 121 321 236 HOH HOH . E 4 HOH AAA 122 322 141 HOH HOH . E 4 HOH AAA 123 323 230 HOH HOH . E 4 HOH AAA 124 324 187 HOH HOH . E 4 HOH AAA 125 325 237 HOH HOH . E 4 HOH AAA 126 326 197 HOH HOH . E 4 HOH AAA 127 327 152 HOH HOH . E 4 HOH AAA 128 328 198 HOH HOH . E 4 HOH AAA 129 329 210 HOH HOH . E 4 HOH AAA 130 330 193 HOH HOH . E 4 HOH AAA 131 331 245 HOH HOH . E 4 HOH AAA 132 332 250 HOH HOH . E 4 HOH AAA 133 333 166 HOH HOH . E 4 HOH AAA 134 334 259 HOH HOH . E 4 HOH AAA 135 335 229 HOH HOH . E 4 HOH AAA 136 336 153 HOH HOH . E 4 HOH AAA 137 337 239 HOH HOH . E 4 HOH AAA 138 338 257 HOH HOH . E 4 HOH AAA 139 339 263 HOH HOH . E 4 HOH AAA 140 340 196 HOH HOH . E 4 HOH AAA 141 341 192 HOH HOH . E 4 HOH AAA 142 342 201 HOH HOH . E 4 HOH AAA 143 343 184 HOH HOH . E 4 HOH AAA 144 344 227 HOH HOH . E 4 HOH AAA 145 345 173 HOH HOH . E 4 HOH AAA 146 346 268 HOH HOH . E 4 HOH AAA 147 347 181 HOH HOH . E 4 HOH AAA 148 348 208 HOH HOH . E 4 HOH AAA 149 349 163 HOH HOH . E 4 HOH AAA 150 350 169 HOH HOH . E 4 HOH AAA 151 351 170 HOH HOH . E 4 HOH AAA 152 352 213 HOH HOH . E 4 HOH AAA 153 353 182 HOH HOH . E 4 HOH AAA 154 354 147 HOH HOH . E 4 HOH AAA 155 355 260 HOH HOH . E 4 HOH AAA 156 356 209 HOH HOH . E 4 HOH AAA 157 357 211 HOH HOH . E 4 HOH AAA 158 358 199 HOH HOH . E 4 HOH AAA 159 359 228 HOH HOH . E 4 HOH AAA 160 360 188 HOH HOH . E 4 HOH AAA 161 361 256 HOH HOH . E 4 HOH AAA 162 362 200 HOH HOH . E 4 HOH AAA 163 363 266 HOH HOH . E 4 HOH AAA 164 364 264 HOH HOH . E 4 HOH AAA 165 365 269 HOH HOH . E 4 HOH AAA 166 366 265 HOH HOH . E 4 HOH AAA 167 367 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -3.921 -0.459 -18.639 1 27.96 ? C1 GOL 100 AAA 1 HETATM 2 O O1 GOL . . . B 2 -2.958 0.512 -18.227 1 31.75 ? O1 GOL 100 AAA 1 HETATM 3 C C2 GOL . . . B 2 -3.56 -1.863 -18.187 1 30.53 ? C2 GOL 100 AAA 1 HETATM 4 O O2 GOL . . . B 2 -2.183 -2.117 -18.442 1 26.37 ? O2 GOL 100 AAA 1 HETATM 5 C C3 GOL . . . B 2 -3.827 -2.19 -16.732 1 28.32 ? C3 GOL 100 AAA 1 HETATM 6 O O3 GOL . . . B 2 -4.698 -1.268 -16.087 1 29.95 ? O3 GOL 100 AAA 1 HETATM 7 H H11 GOL . . . B 2 -3.981 -0.449 -19.624 1 28.26 ? H11 GOL 100 AAA 1 HETATM 8 H H12 GOL . . . B 2 -4.806 -0.218 -18.278 1 28.03 ? H12 GOL 100 AAA 1 HETATM 9 H HO1 GOL . . . B 2 -3.163 1.268 -18.52 0 32.92 ? HO1 GOL 100 AAA 1 HETATM 10 H H2 GOL . . . B 2 -4.086 -2.489 -18.73 1 28.69 ? H2 GOL 100 AAA 1 HETATM 11 H HO2 GOL . . . B 2 -1.902 -2.402 -17.705 0 28.86 ? HO2 GOL 100 AAA 1 HETATM 12 H H31 GOL . . . B 2 -2.967 -2.207 -16.246 1 29.08 ? H31 GOL 100 AAA 1 HETATM 13 H H32 GOL . . . B 2 -4.221 -3.094 -16.678 1 30.12 ? H32 GOL 100 AAA 1 HETATM 14 H HO3 GOL . . . B 2 -5.471 -1.335 -16.449 1 29.94 ? HO3 GOL 100 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #