data_7NMD # _model_server_result.job_id 7bFzNpV_AgQxyAER5ogmKw _model_server_result.datetime_utc '2025-09-24 09:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":106}' # _entry.id 7NMD # _exptl.entry_id 7NMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.45 _cell.angle_gamma 90 _cell.entry_id 7NMD _cell.length_a 79.543 _cell.length_b 48.662 _cell.length_c 123.141 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,AA,BA,CA 1 1 D,E,F,S,T,U,V,W,X,Y,Z,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 R N N ? 6 V N N ? 6 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 315 n n S O2 SO4 doub 316 n n S O3 SO4 sing 317 n n S O4 SO4 sing 318 n n # _atom_sites.entry_id 7NMD _atom_sites.fract_transf_matrix[1][1] 0.012572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003474 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO A 1 301 4 EDO EDO . H 5 PEG A 1 302 2 PEG PEG . I 5 PEG A 1 303 6 PEG PEG . J 6 SO4 A 1 304 2 SO4 SO4 . K 6 SO4 A 1 305 3 SO4 SO4 . L 6 SO4 A 1 306 6 SO4 SO4 . M 4 EDO B 1 101 1 EDO EDO . N 4 EDO B 1 102 2 EDO EDO . O 4 EDO B 1 103 3 EDO EDO . P 5 PEG B 1 104 1 PEG PEG . Q 5 PEG B 1 105 4 PEG PEG . R 6 SO4 B 1 106 7 SO4 SO4 . S 4 EDO D 1 301 5 EDO EDO . T 4 EDO D 1 302 8 EDO EDO . U 5 PEG D 1 303 3 PEG PEG . V 6 SO4 D 1 304 1 SO4 SO4 . W 4 EDO E 1 101 6 EDO EDO . X 4 EDO E 1 102 7 EDO EDO . Y 5 PEG E 1 103 5 PEG PEG . Z 6 SO4 F 1 101 4 SO4 SO4 . AA 7 HOH A 1 401 80 HOH HOH . AA 7 HOH A 2 402 40 HOH HOH . AA 7 HOH A 3 403 34 HOH HOH . AA 7 HOH A 4 404 79 HOH HOH . AA 7 HOH A 5 405 224 HOH HOH . AA 7 HOH A 6 406 45 HOH HOH . AA 7 HOH A 7 407 97 HOH HOH . AA 7 HOH A 8 408 75 HOH HOH . AA 7 HOH A 9 409 84 HOH HOH . AA 7 HOH A 10 410 46 HOH HOH . AA 7 HOH A 11 411 64 HOH HOH . AA 7 HOH A 12 412 51 HOH HOH . AA 7 HOH A 13 413 35 HOH HOH . AA 7 HOH A 14 414 99 HOH HOH . AA 7 HOH A 15 415 24 HOH HOH . AA 7 HOH A 16 416 25 HOH HOH . AA 7 HOH A 17 417 227 HOH HOH . AA 7 HOH A 18 418 150 HOH HOH . AA 7 HOH A 19 419 135 HOH HOH . AA 7 HOH A 20 420 228 HOH HOH . AA 7 HOH A 21 421 70 HOH HOH . AA 7 HOH A 22 422 49 HOH HOH . AA 7 HOH A 23 423 69 HOH HOH . AA 7 HOH A 24 424 3 HOH HOH . AA 7 HOH A 25 425 175 HOH HOH . AA 7 HOH A 26 426 42 HOH HOH . AA 7 HOH A 27 427 102 HOH HOH . AA 7 HOH A 28 428 23 HOH HOH . AA 7 HOH A 29 429 94 HOH HOH . AA 7 HOH A 30 430 232 HOH HOH . AA 7 HOH A 31 431 114 HOH HOH . AA 7 HOH A 32 432 217 HOH HOH . AA 7 HOH A 33 433 47 HOH HOH . AA 7 HOH A 34 434 189 HOH HOH . AA 7 HOH A 35 435 155 HOH HOH . AA 7 HOH A 36 436 154 HOH HOH . AA 7 HOH A 37 437 206 HOH HOH . AA 7 HOH A 38 438 38 HOH HOH . AA 7 HOH A 39 439 230 HOH HOH . AA 7 HOH A 40 440 132 HOH HOH . AA 7 HOH A 41 441 74 HOH HOH . AA 7 HOH A 42 442 22 HOH HOH . AA 7 HOH A 43 443 10 HOH HOH . AA 7 HOH A 44 444 221 HOH HOH . AA 7 HOH A 45 445 41 HOH HOH . AA 7 HOH A 46 446 204 HOH HOH . AA 7 HOH A 47 447 61 HOH HOH . AA 7 HOH A 48 448 159 HOH HOH . AA 7 HOH A 49 449 223 HOH HOH . AA 7 HOH A 50 450 111 HOH HOH . AA 7 HOH A 51 451 151 HOH HOH . AA 7 HOH A 52 452 173 HOH HOH . AA 7 HOH A 53 453 27 HOH HOH . AA 7 HOH A 54 454 32 HOH HOH . AA 7 HOH A 55 455 118 HOH HOH . AA 7 HOH A 56 456 15 HOH HOH . AA 7 HOH A 57 457 60 HOH HOH . AA 7 HOH A 58 458 18 HOH HOH . AA 7 HOH A 59 459 216 HOH HOH . AA 7 HOH A 60 460 196 HOH HOH . AA 7 HOH A 61 461 19 HOH HOH . AA 7 HOH A 62 462 127 HOH HOH . AA 7 HOH A 63 463 148 HOH HOH . AA 7 HOH A 64 464 213 HOH HOH . AA 7 HOH A 65 465 160 HOH HOH . AA 7 HOH A 66 466 208 HOH HOH . AA 7 HOH A 67 467 91 HOH HOH . AA 7 HOH A 68 468 62 HOH HOH . AA 7 HOH A 69 469 220 HOH HOH . AA 7 HOH A 70 470 210 HOH HOH . AA 7 HOH A 71 471 143 HOH HOH . AA 7 HOH A 72 472 67 HOH HOH . AA 7 HOH A 73 473 107 HOH HOH . AA 7 HOH A 74 474 21 HOH HOH . AA 7 HOH A 75 475 144 HOH HOH . AA 7 HOH A 76 476 190 HOH HOH . AA 7 HOH A 77 477 68 HOH HOH . AA 7 HOH A 78 478 90 HOH HOH . AA 7 HOH A 79 479 153 HOH HOH . AA 7 HOH A 80 480 193 HOH HOH . AA 7 HOH A 81 481 203 HOH HOH . AA 7 HOH A 82 482 12 HOH HOH . AA 7 HOH A 83 483 125 HOH HOH . AA 7 HOH A 84 484 112 HOH HOH . AA 7 HOH A 85 485 43 HOH HOH . AA 7 HOH A 86 486 113 HOH HOH . AA 7 HOH A 87 487 122 HOH HOH . AA 7 HOH A 88 488 194 HOH HOH . BA 7 HOH B 1 201 50 HOH HOH . BA 7 HOH B 2 202 145 HOH HOH . BA 7 HOH B 3 203 165 HOH HOH . BA 7 HOH B 4 204 179 HOH HOH . BA 7 HOH B 5 205 6 HOH HOH . BA 7 HOH B 6 206 17 HOH HOH . BA 7 HOH B 7 207 169 HOH HOH . BA 7 HOH B 8 208 72 HOH HOH . BA 7 HOH B 9 209 238 HOH HOH . BA 7 HOH B 10 210 166 HOH HOH . BA 7 HOH B 11 211 121 HOH HOH . BA 7 HOH B 12 212 139 HOH HOH . BA 7 HOH B 13 213 5 HOH HOH . BA 7 HOH B 14 214 106 HOH HOH . BA 7 HOH B 15 215 123 HOH HOH . BA 7 HOH B 16 216 198 HOH HOH . BA 7 HOH B 17 217 215 HOH HOH . BA 7 HOH B 18 218 157 HOH HOH . BA 7 HOH B 19 219 52 HOH HOH . BA 7 HOH B 20 220 36 HOH HOH . BA 7 HOH B 21 221 207 HOH HOH . BA 7 HOH B 22 222 11 HOH HOH . BA 7 HOH B 23 223 201 HOH HOH . BA 7 HOH B 24 224 126 HOH HOH . BA 7 HOH B 25 225 44 HOH HOH . BA 7 HOH B 26 226 138 HOH HOH . BA 7 HOH B 27 227 30 HOH HOH . BA 7 HOH B 28 228 16 HOH HOH . BA 7 HOH B 29 229 13 HOH HOH . BA 7 HOH B 30 230 39 HOH HOH . BA 7 HOH B 31 231 128 HOH HOH . BA 7 HOH B 32 232 209 HOH HOH . BA 7 HOH B 33 233 77 HOH HOH . BA 7 HOH B 34 234 88 HOH HOH . BA 7 HOH B 35 235 56 HOH HOH . BA 7 HOH B 36 236 187 HOH HOH . BA 7 HOH B 37 237 202 HOH HOH . BA 7 HOH B 38 238 233 HOH HOH . BA 7 HOH B 39 239 101 HOH HOH . BA 7 HOH B 40 240 109 HOH HOH . BA 7 HOH B 41 241 239 HOH HOH . BA 7 HOH B 42 242 55 HOH HOH . BA 7 HOH B 43 243 57 HOH HOH . BA 7 HOH B 44 244 181 HOH HOH . BA 7 HOH B 45 245 180 HOH HOH . BA 7 HOH B 46 246 176 HOH HOH . BA 7 HOH B 47 247 134 HOH HOH . CA 7 HOH C 1 101 182 HOH HOH . CA 7 HOH C 2 102 82 HOH HOH . CA 7 HOH C 3 103 236 HOH HOH . DA 7 HOH D 1 401 105 HOH HOH . DA 7 HOH D 2 402 117 HOH HOH . DA 7 HOH D 3 403 58 HOH HOH . DA 7 HOH D 4 404 205 HOH HOH . DA 7 HOH D 5 405 8 HOH HOH . DA 7 HOH D 6 406 28 HOH HOH . DA 7 HOH D 7 407 186 HOH HOH . DA 7 HOH D 8 408 218 HOH HOH . DA 7 HOH D 9 409 110 HOH HOH . DA 7 HOH D 10 410 222 HOH HOH . DA 7 HOH D 11 411 89 HOH HOH . DA 7 HOH D 12 412 170 HOH HOH . DA 7 HOH D 13 413 152 HOH HOH . DA 7 HOH D 14 414 86 HOH HOH . DA 7 HOH D 15 415 136 HOH HOH . DA 7 HOH D 16 416 81 HOH HOH . DA 7 HOH D 17 417 1 HOH HOH . DA 7 HOH D 18 418 26 HOH HOH . DA 7 HOH D 19 419 226 HOH HOH . DA 7 HOH D 20 420 93 HOH HOH . DA 7 HOH D 21 421 197 HOH HOH . DA 7 HOH D 22 422 167 HOH HOH . DA 7 HOH D 23 423 48 HOH HOH . DA 7 HOH D 24 424 115 HOH HOH . DA 7 HOH D 25 425 76 HOH HOH . DA 7 HOH D 26 426 188 HOH HOH . DA 7 HOH D 27 427 20 HOH HOH . DA 7 HOH D 28 428 147 HOH HOH . DA 7 HOH D 29 429 31 HOH HOH . DA 7 HOH D 30 430 73 HOH HOH . DA 7 HOH D 31 431 146 HOH HOH . DA 7 HOH D 32 432 183 HOH HOH . DA 7 HOH D 33 433 211 HOH HOH . DA 7 HOH D 34 434 219 HOH HOH . DA 7 HOH D 35 435 142 HOH HOH . DA 7 HOH D 36 436 14 HOH HOH . DA 7 HOH D 37 437 168 HOH HOH . DA 7 HOH D 38 438 4 HOH HOH . DA 7 HOH D 39 439 234 HOH HOH . DA 7 HOH D 40 440 33 HOH HOH . DA 7 HOH D 41 441 141 HOH HOH . DA 7 HOH D 42 442 9 HOH HOH . DA 7 HOH D 43 443 161 HOH HOH . DA 7 HOH D 44 444 192 HOH HOH . DA 7 HOH D 45 445 200 HOH HOH . DA 7 HOH D 46 446 54 HOH HOH . DA 7 HOH D 47 447 100 HOH HOH . DA 7 HOH D 48 448 53 HOH HOH . DA 7 HOH D 49 449 235 HOH HOH . DA 7 HOH D 50 450 29 HOH HOH . DA 7 HOH D 51 451 129 HOH HOH . DA 7 HOH D 52 452 66 HOH HOH . DA 7 HOH D 53 453 171 HOH HOH . DA 7 HOH D 54 454 191 HOH HOH . DA 7 HOH D 55 455 103 HOH HOH . DA 7 HOH D 56 456 108 HOH HOH . DA 7 HOH D 57 457 131 HOH HOH . DA 7 HOH D 58 458 195 HOH HOH . DA 7 HOH D 59 459 140 HOH HOH . DA 7 HOH D 60 460 130 HOH HOH . DA 7 HOH D 61 461 37 HOH HOH . DA 7 HOH D 62 462 116 HOH HOH . DA 7 HOH D 63 463 229 HOH HOH . DA 7 HOH D 64 464 149 HOH HOH . DA 7 HOH D 65 465 184 HOH HOH . DA 7 HOH D 66 466 156 HOH HOH . DA 7 HOH D 67 467 63 HOH HOH . DA 7 HOH D 68 468 98 HOH HOH . DA 7 HOH D 69 469 214 HOH HOH . DA 7 HOH D 70 470 172 HOH HOH . DA 7 HOH D 71 471 158 HOH HOH . DA 7 HOH D 72 472 225 HOH HOH . DA 7 HOH D 73 473 237 HOH HOH . DA 7 HOH D 74 474 185 HOH HOH . EA 7 HOH E 1 201 120 HOH HOH . EA 7 HOH E 2 202 137 HOH HOH . EA 7 HOH E 3 203 212 HOH HOH . EA 7 HOH E 4 204 164 HOH HOH . EA 7 HOH E 5 205 124 HOH HOH . EA 7 HOH E 6 206 199 HOH HOH . EA 7 HOH E 7 207 59 HOH HOH . EA 7 HOH E 8 208 133 HOH HOH . EA 7 HOH E 9 209 7 HOH HOH . EA 7 HOH E 10 210 65 HOH HOH . EA 7 HOH E 11 211 177 HOH HOH . EA 7 HOH E 12 212 178 HOH HOH . EA 7 HOH E 13 213 78 HOH HOH . EA 7 HOH E 14 214 162 HOH HOH . EA 7 HOH E 15 215 2 HOH HOH . EA 7 HOH E 16 216 71 HOH HOH . EA 7 HOH E 17 217 87 HOH HOH . EA 7 HOH E 18 218 96 HOH HOH . EA 7 HOH E 19 219 174 HOH HOH . EA 7 HOH E 20 220 92 HOH HOH . EA 7 HOH E 21 221 163 HOH HOH . EA 7 HOH E 22 222 231 HOH HOH . FA 7 HOH F 1 201 85 HOH HOH . FA 7 HOH F 2 202 95 HOH HOH . FA 7 HOH F 3 203 119 HOH HOH . FA 7 HOH F 4 204 104 HOH HOH . FA 7 HOH F 5 205 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . R 6 33.255 9.574 23.381 1 123.12 ? S SO4 106 B 1 HETATM 2 O O1 SO4 . . . R 6 32.371 8.444 23.423 1 125.48 ? O1 SO4 106 B 1 HETATM 3 O O2 SO4 . . . R 6 33.549 9.892 22.007 1 112.33 ? O2 SO4 106 B 1 HETATM 4 O O3 SO4 . . . R 6 34.475 9.256 24.079 1 115.17 ? O3 SO4 106 B 1 HETATM 5 O O4 SO4 . . . R 6 32.62 10.702 24.019 1 121.98 ? O4 SO4 106 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #