data_7NMF # _model_server_result.job_id QSHrD3NSp3O9Nn1n-8OShA _model_server_result.datetime_utc '2025-03-05 19:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7NMF # _exptl.entry_id 7NMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.98 _cell.angle_gamma 90 _cell.entry_id 7NMF _cell.length_a 63.38 _cell.length_b 72.25 _cell.length_c 114.84 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 89 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf5 D SG CYS 133 D CYS 134 1_555 D SG CYS 183 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf6 D SG CYS 158 D CYS 159 1_555 E SG CYS 167 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf7 E SG CYS 22 E CYS 24 1_555 E SG CYS 91 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf8 E SG CYS 141 E CYS 143 1_555 E SG CYS 206 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7NMF _atom_sites.fract_transf_matrix[1][1] 0.015778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003637 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 MES A 1 301 1 MES MES . G 7 EDO D 1 201 11 EDO EDO . H 8 SO4 E 1 301 1 SO4 SO4 . I 8 SO4 E 1 302 2 SO4 SO4 . J 9 HOH A 1 401 44 HOH HOH . J 9 HOH A 2 402 9 HOH HOH . J 9 HOH A 3 403 18 HOH HOH . J 9 HOH A 4 404 35 HOH HOH . J 9 HOH A 5 405 4 HOH HOH . J 9 HOH A 6 406 45 HOH HOH . J 9 HOH A 7 407 42 HOH HOH . J 9 HOH A 8 408 2 HOH HOH . J 9 HOH A 9 409 14 HOH HOH . J 9 HOH A 10 410 20 HOH HOH . J 9 HOH A 11 411 24 HOH HOH . J 9 HOH A 12 412 19 HOH HOH . K 9 HOH B 1 101 17 HOH HOH . K 9 HOH B 2 102 25 HOH HOH . K 9 HOH B 3 103 34 HOH HOH . K 9 HOH B 4 104 32 HOH HOH . L 9 HOH D 1 301 16 HOH HOH . L 9 HOH D 2 302 37 HOH HOH . L 9 HOH D 3 303 27 HOH HOH . L 9 HOH D 4 304 41 HOH HOH . L 9 HOH D 5 305 11 HOH HOH . L 9 HOH D 6 306 10 HOH HOH . L 9 HOH D 7 307 6 HOH HOH . L 9 HOH D 8 308 12 HOH HOH . L 9 HOH D 9 309 38 HOH HOH . L 9 HOH D 10 310 26 HOH HOH . L 9 HOH D 11 311 43 HOH HOH . L 9 HOH D 12 312 8 HOH HOH . L 9 HOH D 13 313 1 HOH HOH . L 9 HOH D 14 314 40 HOH HOH . L 9 HOH D 15 315 15 HOH HOH . L 9 HOH D 16 316 36 HOH HOH . L 9 HOH D 17 317 30 HOH HOH . M 9 HOH E 1 401 39 HOH HOH . M 9 HOH E 2 402 33 HOH HOH . M 9 HOH E 3 403 3 HOH HOH . M 9 HOH E 4 404 28 HOH HOH . M 9 HOH E 5 405 22 HOH HOH . M 9 HOH E 6 406 21 HOH HOH . M 9 HOH E 7 407 5 HOH HOH . M 9 HOH E 8 408 7 HOH HOH . M 9 HOH E 9 409 23 HOH HOH . M 9 HOH E 10 410 31 HOH HOH . M 9 HOH E 11 411 29 HOH HOH . M 9 HOH E 12 412 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 7 -8.935 -1.394 -43.485 1 55.42 ? C1 EDO 201 D 1 HETATM 2 O O1 EDO . . . G 7 -7.647 -1.198 -42.919 1 40.22 ? O1 EDO 201 D 1 HETATM 3 C C2 EDO . . . G 7 -9.002 -2.38 -44.652 1 63.92 ? C2 EDO 201 D 1 HETATM 4 O O2 EDO . . . G 7 -10.005 -2.158 -45.69 1 53.15 ? O2 EDO 201 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #