data_7NML # _model_server_result.job_id UOVGvs57hWAUTJF0FN_CwQ _model_server_result.datetime_utc '2025-01-10 20:03:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":206}' # _entry.id 7NML # _exptl.entry_id 7NML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NML _cell.length_a 43.319 _cell.length_b 58.475 _cell.length_c 112.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NML _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 14 A GLU 15 1_555 A N CME 15 A CME 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CME 15 A CME 16 1_555 A N LEU 16 A LEU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C VAL 86 A VAL 87 1_555 A N CME 87 A CME 88 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C VAL 86 A VAL 87 1_555 A N CME 87 A CME 88 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C CME 87 A CME 88 1_555 A N ILE 88 A ILE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C LYS 128 A LYS 129 1_555 A N CME 129 A CME 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale7 A C CME 129 A CME 130 1_555 A N VAL 130 A VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale8 B C GLU 14 B GLU 15 1_555 B N CME 15 B CME 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C CME 15 B CME 16 1_555 B N LEU 16 B LEU 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C VAL 86 B VAL 87 1_555 B N CME 87 B CME 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C CME 87 B CME 88 1_555 B N ILE 88 B ILE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale12 B C LYS 128 B LYS 129 1_555 B N CME 129 B CME 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C CME 129 B CME 130 1_555 B N VAL 130 B VAL 131 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C CME 129 B CME 130 1_555 B N VAL 130 B VAL 131 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 7NML _atom_sites.fract_transf_matrix[1][1] 0.023085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 201 3096 DMS DMS . D 3 I7B B 1 201 1 I7B F87 . E 2 DMS B 1 202 3092 DMS DMS . F 2 DMS B 1 203 3093 DMS DMS . G 2 DMS B 1 204 3094 DMS DMS . H 2 DMS B 1 205 3097 DMS DMS . I 2 DMS B 1 206 3098 DMS DMS . J 4 HOH A 1 301 33 HOH HOH . J 4 HOH A 2 302 101 HOH HOH . J 4 HOH A 3 303 123 HOH HOH . J 4 HOH A 4 304 149 HOH HOH . J 4 HOH A 5 305 183 HOH HOH . J 4 HOH A 6 306 163 HOH HOH . J 4 HOH A 7 307 27 HOH HOH . J 4 HOH A 8 308 29 HOH HOH . J 4 HOH A 9 309 15 HOH HOH . J 4 HOH A 10 310 79 HOH HOH . J 4 HOH A 11 311 131 HOH HOH . J 4 HOH A 12 312 81 HOH HOH . J 4 HOH A 13 313 178 HOH HOH . J 4 HOH A 14 314 132 HOH HOH . J 4 HOH A 15 315 76 HOH HOH . J 4 HOH A 16 316 13 HOH HOH . J 4 HOH A 17 317 151 HOH HOH . J 4 HOH A 18 318 100 HOH HOH . J 4 HOH A 19 319 50 HOH HOH . J 4 HOH A 20 320 23 HOH HOH . J 4 HOH A 21 321 19 HOH HOH . J 4 HOH A 22 322 62 HOH HOH . J 4 HOH A 23 323 237 HOH HOH . J 4 HOH A 24 324 171 HOH HOH . J 4 HOH A 25 325 35 HOH HOH . J 4 HOH A 26 326 78 HOH HOH . J 4 HOH A 27 327 121 HOH HOH . J 4 HOH A 28 328 30 HOH HOH . J 4 HOH A 29 329 60 HOH HOH . J 4 HOH A 30 330 148 HOH HOH . J 4 HOH A 31 331 8 HOH HOH . J 4 HOH A 32 332 40 HOH HOH . J 4 HOH A 33 333 214 HOH HOH . J 4 HOH A 34 334 90 HOH HOH . J 4 HOH A 35 335 5 HOH HOH . J 4 HOH A 36 336 213 HOH HOH . J 4 HOH A 37 337 164 HOH HOH . J 4 HOH A 38 338 107 HOH HOH . J 4 HOH A 39 339 17 HOH HOH . J 4 HOH A 40 340 16 HOH HOH . J 4 HOH A 41 341 53 HOH HOH . J 4 HOH A 42 342 96 HOH HOH . J 4 HOH A 43 343 73 HOH HOH . J 4 HOH A 44 344 65 HOH HOH . J 4 HOH A 45 345 68 HOH HOH . J 4 HOH A 46 346 150 HOH HOH . J 4 HOH A 47 347 3 HOH HOH . J 4 HOH A 48 348 144 HOH HOH . J 4 HOH A 49 349 176 HOH HOH . J 4 HOH A 50 350 129 HOH HOH . J 4 HOH A 51 351 179 HOH HOH . J 4 HOH A 52 352 137 HOH HOH . J 4 HOH A 53 353 94 HOH HOH . J 4 HOH A 54 354 240 HOH HOH . J 4 HOH A 55 355 191 HOH HOH . J 4 HOH A 56 356 208 HOH HOH . J 4 HOH A 57 357 63 HOH HOH . J 4 HOH A 58 358 166 HOH HOH . J 4 HOH A 59 359 102 HOH HOH . J 4 HOH A 60 360 172 HOH HOH . J 4 HOH A 61 361 133 HOH HOH . J 4 HOH A 62 362 201 HOH HOH . J 4 HOH A 63 363 226 HOH HOH . J 4 HOH A 64 364 161 HOH HOH . J 4 HOH A 65 365 196 HOH HOH . J 4 HOH A 66 366 228 HOH HOH . J 4 HOH A 67 367 57 HOH HOH . J 4 HOH A 68 368 122 HOH HOH . J 4 HOH A 69 369 175 HOH HOH . J 4 HOH A 70 370 12 HOH HOH . J 4 HOH A 71 371 56 HOH HOH . J 4 HOH A 72 372 170 HOH HOH . J 4 HOH A 73 373 224 HOH HOH . J 4 HOH A 74 374 153 HOH HOH . J 4 HOH A 75 375 74 HOH HOH . J 4 HOH A 76 376 32 HOH HOH . J 4 HOH A 77 377 54 HOH HOH . J 4 HOH A 78 378 59 HOH HOH . J 4 HOH A 79 379 194 HOH HOH . J 4 HOH A 80 380 200 HOH HOH . J 4 HOH A 81 381 135 HOH HOH . J 4 HOH A 82 382 42 HOH HOH . J 4 HOH A 83 383 61 HOH HOH . J 4 HOH A 84 384 104 HOH HOH . J 4 HOH A 85 385 215 HOH HOH . J 4 HOH A 86 386 174 HOH HOH . J 4 HOH A 87 387 217 HOH HOH . J 4 HOH A 88 388 127 HOH HOH . J 4 HOH A 89 389 142 HOH HOH . J 4 HOH A 90 390 238 HOH HOH . J 4 HOH A 91 391 46 HOH HOH . J 4 HOH A 92 392 6 HOH HOH . J 4 HOH A 93 393 223 HOH HOH . J 4 HOH A 94 394 140 HOH HOH . J 4 HOH A 95 395 97 HOH HOH . J 4 HOH A 96 396 230 HOH HOH . J 4 HOH A 97 397 99 HOH HOH . J 4 HOH A 98 398 193 HOH HOH . J 4 HOH A 99 399 117 HOH HOH . J 4 HOH A 100 400 192 HOH HOH . J 4 HOH A 101 401 211 HOH HOH . J 4 HOH A 102 402 212 HOH HOH . J 4 HOH A 103 403 126 HOH HOH . J 4 HOH A 104 404 234 HOH HOH . J 4 HOH A 105 405 209 HOH HOH . J 4 HOH A 106 406 118 HOH HOH . J 4 HOH A 107 407 167 HOH HOH . J 4 HOH A 108 408 190 HOH HOH . J 4 HOH A 109 409 154 HOH HOH . J 4 HOH A 110 410 152 HOH HOH . J 4 HOH A 111 411 159 HOH HOH . J 4 HOH A 112 412 103 HOH HOH . J 4 HOH A 113 413 236 HOH HOH . J 4 HOH A 114 414 232 HOH HOH . J 4 HOH A 115 415 120 HOH HOH . J 4 HOH A 116 416 85 HOH HOH . J 4 HOH A 117 417 195 HOH HOH . J 4 HOH A 118 418 233 HOH HOH . J 4 HOH A 119 419 169 HOH HOH . K 4 HOH B 1 301 109 HOH HOH . K 4 HOH B 2 302 48 HOH HOH . K 4 HOH B 3 303 231 HOH HOH . K 4 HOH B 4 304 71 HOH HOH . K 4 HOH B 5 305 70 HOH HOH . K 4 HOH B 6 306 130 HOH HOH . K 4 HOH B 7 307 84 HOH HOH . K 4 HOH B 8 308 22 HOH HOH . K 4 HOH B 9 309 72 HOH HOH . K 4 HOH B 10 310 186 HOH HOH . K 4 HOH B 11 311 189 HOH HOH . K 4 HOH B 12 312 210 HOH HOH . K 4 HOH B 13 313 51 HOH HOH . K 4 HOH B 14 314 206 HOH HOH . K 4 HOH B 15 315 204 HOH HOH . K 4 HOH B 16 316 180 HOH HOH . K 4 HOH B 17 317 222 HOH HOH . K 4 HOH B 18 318 36 HOH HOH . K 4 HOH B 19 319 199 HOH HOH . K 4 HOH B 20 320 198 HOH HOH . K 4 HOH B 21 321 66 HOH HOH . K 4 HOH B 22 322 108 HOH HOH . K 4 HOH B 23 323 111 HOH HOH . K 4 HOH B 24 324 24 HOH HOH . K 4 HOH B 25 325 221 HOH HOH . K 4 HOH B 26 326 11 HOH HOH . K 4 HOH B 27 327 25 HOH HOH . K 4 HOH B 28 328 134 HOH HOH . K 4 HOH B 29 329 80 HOH HOH . K 4 HOH B 30 330 87 HOH HOH . K 4 HOH B 31 331 114 HOH HOH . K 4 HOH B 32 332 37 HOH HOH . K 4 HOH B 33 333 2 HOH HOH . K 4 HOH B 34 334 88 HOH HOH . K 4 HOH B 35 335 34 HOH HOH . K 4 HOH B 36 336 28 HOH HOH . K 4 HOH B 37 337 219 HOH HOH . K 4 HOH B 38 338 92 HOH HOH . K 4 HOH B 39 339 55 HOH HOH . K 4 HOH B 40 340 141 HOH HOH . K 4 HOH B 41 341 1 HOH HOH . K 4 HOH B 42 342 187 HOH HOH . K 4 HOH B 43 343 125 HOH HOH . K 4 HOH B 44 344 98 HOH HOH . K 4 HOH B 45 345 86 HOH HOH . K 4 HOH B 46 346 106 HOH HOH . K 4 HOH B 47 347 188 HOH HOH . K 4 HOH B 48 348 14 HOH HOH . K 4 HOH B 49 349 182 HOH HOH . K 4 HOH B 50 350 44 HOH HOH . K 4 HOH B 51 351 26 HOH HOH . K 4 HOH B 52 352 110 HOH HOH . K 4 HOH B 53 353 31 HOH HOH . K 4 HOH B 54 354 139 HOH HOH . K 4 HOH B 55 355 112 HOH HOH . K 4 HOH B 56 356 241 HOH HOH . K 4 HOH B 57 357 105 HOH HOH . K 4 HOH B 58 358 93 HOH HOH . K 4 HOH B 59 359 43 HOH HOH . K 4 HOH B 60 360 10 HOH HOH . K 4 HOH B 61 361 205 HOH HOH . K 4 HOH B 62 362 207 HOH HOH . K 4 HOH B 63 363 95 HOH HOH . K 4 HOH B 64 364 21 HOH HOH . K 4 HOH B 65 365 18 HOH HOH . K 4 HOH B 66 366 77 HOH HOH . K 4 HOH B 67 367 64 HOH HOH . K 4 HOH B 68 368 9 HOH HOH . K 4 HOH B 69 369 203 HOH HOH . K 4 HOH B 70 370 75 HOH HOH . K 4 HOH B 71 371 45 HOH HOH . K 4 HOH B 72 372 38 HOH HOH . K 4 HOH B 73 373 115 HOH HOH . K 4 HOH B 74 374 184 HOH HOH . K 4 HOH B 75 375 39 HOH HOH . K 4 HOH B 76 376 4 HOH HOH . K 4 HOH B 77 377 58 HOH HOH . K 4 HOH B 78 378 202 HOH HOH . K 4 HOH B 79 379 113 HOH HOH . K 4 HOH B 80 380 7 HOH HOH . K 4 HOH B 81 381 158 HOH HOH . K 4 HOH B 82 382 138 HOH HOH . K 4 HOH B 83 383 181 HOH HOH . K 4 HOH B 84 384 20 HOH HOH . K 4 HOH B 85 385 47 HOH HOH . K 4 HOH B 86 386 136 HOH HOH . K 4 HOH B 87 387 67 HOH HOH . K 4 HOH B 88 388 165 HOH HOH . K 4 HOH B 89 389 145 HOH HOH . K 4 HOH B 90 390 41 HOH HOH . K 4 HOH B 91 391 49 HOH HOH . K 4 HOH B 92 392 69 HOH HOH . K 4 HOH B 93 393 124 HOH HOH . K 4 HOH B 94 394 82 HOH HOH . K 4 HOH B 95 395 155 HOH HOH . K 4 HOH B 96 396 128 HOH HOH . K 4 HOH B 97 397 52 HOH HOH . K 4 HOH B 98 398 239 HOH HOH . K 4 HOH B 99 399 229 HOH HOH . K 4 HOH B 100 400 173 HOH HOH . K 4 HOH B 101 401 119 HOH HOH . K 4 HOH B 102 402 157 HOH HOH . K 4 HOH B 103 403 225 HOH HOH . K 4 HOH B 104 404 160 HOH HOH . K 4 HOH B 105 405 220 HOH HOH . K 4 HOH B 106 406 89 HOH HOH . K 4 HOH B 107 407 177 HOH HOH . K 4 HOH B 108 408 185 HOH HOH . K 4 HOH B 109 409 116 HOH HOH . K 4 HOH B 110 410 216 HOH HOH . K 4 HOH B 111 411 156 HOH HOH . K 4 HOH B 112 412 168 HOH HOH . K 4 HOH B 113 413 162 HOH HOH . K 4 HOH B 114 414 83 HOH HOH . K 4 HOH B 115 415 218 HOH HOH . K 4 HOH B 116 416 235 HOH HOH . K 4 HOH B 117 417 242 HOH HOH . K 4 HOH B 118 418 91 HOH HOH . K 4 HOH B 119 419 227 HOH HOH . K 4 HOH B 120 420 146 HOH HOH . K 4 HOH B 121 421 143 HOH HOH . K 4 HOH B 122 422 197 HOH HOH . K 4 HOH B 123 423 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 2 15.043 14.932 4.524 1 77.54 ? S DMS 206 B 1 HETATM 2 O O DMS . . . I 2 14.344 16.253 4.403 1 59.87 ? O DMS 206 B 1 HETATM 3 C C1 DMS . . . I 2 13.839 13.577 4.432 1 55.91 ? C1 DMS 206 B 1 HETATM 4 C C2 DMS . . . I 2 16.004 14.585 3.032 1 44.77 ? C2 DMS 206 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #