data_7NMM
#
_model_server_result.job_id            sACPohl7vF5c0DYDDQM9rQ 
_model_server_result.datetime_utc      '2024-11-26 03:17:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":101}' 
#
_entry.id    7NMM 
#
_exptl.entry_id    7NMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NMM 
_cell.length_a            125.444 
_cell.length_b            222.479 
_cell.length_c            102.015 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
PISA dimeric 2 software_defined_assembly 7 
PISA dimeric 2 software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,U,V,HA,PA 1 1 
B,J,W,IA,QA 2 1 
C,K,Q,R,X,JA,RA 3 1 
D,L,Y,Z,AA,KA,SA 4 1 
E,M,S,T,BA,CA,LA,TA 5 1 
F,N,DA,MA,UA 6 1 
G,O,EA,NA,VA 7 1 
H,P,FA,GA,OA,WA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 AA N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 56 1_555 D SG CYS 55 D CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
disulf ? disulf2 B SG CYS 55 B CYS 56 1_555 C SG CYS 55 C CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf3 E SG CYS 55 E CYS 56 1_555 H SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf4 F SG CYS 55 F CYS 56 1_555 G SG CYS 55 G CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf5 I SG CYS 36 I CYS 54 1_555 I SG CYS 75 I CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 J SG CYS 36 J CYS 54 1_555 J SG CYS 75 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf7 K SG CYS 36 K CYS 54 1_555 K SG CYS 75 K CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 L SG CYS 36 L CYS 54 1_555 L SG CYS 75 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf9 M SG CYS 36 M CYS 54 1_555 M SG CYS 75 M CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf10 N SG CYS 36 N CYS 54 1_555 N SG CYS 75 N CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf11 O SG CYS 36 O CYS 54 1_555 O SG CYS 75 O CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 P SG CYS 36 P CYS 54 1_555 P SG CYS 75 P CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 120 n n 
C1 C2 EDO sing 121 n n 
C1 H11 EDO sing 122 n n 
C1 H12 EDO sing 123 n n 
O1 HO1 EDO sing 124 n n 
C2 O2 EDO sing 125 n n 
C2 H21 EDO sing 126 n n 
C2 H22 EDO sing 127 n n 
O2 HO2 EDO sing 128 n n 
#
_atom_sites.entry_id                     7NMM 
_atom_sites.fract_transf_matrix[1][1]    0.007972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 EDO C 1 101 102 EDO EDO . 
R 3 EDO C 1 102 1 EDO EDO . 
S 3 EDO E 1 101 3 EDO EDO . 
T 3 EDO E 1 102 101 EDO EDO . 
U 3 EDO I 1 201 201 EDO EDO . 
V 3 EDO I 1 202 301 EDO EDO . 
W 3 EDO J 1 201 203 EDO EDO . 
X 3 EDO K 1 201 8 EDO EDO . 
Y 3 EDO L 1 201 201 EDO EDO . 
Z 4 1PE L 1 202 19 1PE 1PE . 
AA 3 EDO L 1 203 204 EDO EDO . 
BA 3 EDO M 1 201 302 EDO EDO . 
CA 5 CL M 1 202 1 CL CL . 
DA 3 EDO N 1 201 207 EDO EDO . 
EA 6 PEG O 1 201 201 PEG PEG . 
FA 3 EDO P 1 201 7 EDO EDO . 
GA 4 1PE P 1 202 201 1PE 1PE . 
HA 7 HOH A 1 101 27 HOH HOH . 
HA 7 HOH A 2 102 95 HOH HOH . 
HA 7 HOH A 3 103 40 HOH HOH . 
IA 7 HOH B 1 101 20 HOH HOH . 
IA 7 HOH B 2 102 169 HOH HOH . 
JA 7 HOH C 1 201 36 HOH HOH . 
JA 7 HOH C 2 202 96 HOH HOH . 
JA 7 HOH C 3 203 13 HOH HOH . 
JA 7 HOH C 4 204 73 HOH HOH . 
JA 7 HOH C 5 205 144 HOH HOH . 
KA 7 HOH D 1 101 119 HOH HOH . 
LA 7 HOH E 1 201 162 HOH HOH . 
LA 7 HOH E 2 202 122 HOH HOH . 
LA 7 HOH E 3 203 112 HOH HOH . 
LA 7 HOH E 4 204 22 HOH HOH . 
LA 7 HOH E 5 205 102 HOH HOH . 
LA 7 HOH E 6 206 138 HOH HOH . 
LA 7 HOH E 7 207 92 HOH HOH . 
LA 7 HOH E 8 208 10 HOH HOH . 
LA 7 HOH E 9 209 78 HOH HOH . 
MA 7 HOH F 1 101 155 HOH HOH . 
MA 7 HOH F 2 102 97 HOH HOH . 
MA 7 HOH F 3 103 2 HOH HOH . 
MA 7 HOH F 4 104 173 HOH HOH . 
MA 7 HOH F 5 105 28 HOH HOH . 
MA 7 HOH F 6 106 174 HOH HOH . 
MA 7 HOH F 7 107 19 HOH HOH . 
MA 7 HOH F 8 108 127 HOH HOH . 
MA 7 HOH F 9 109 141 HOH HOH . 
MA 7 HOH F 10 110 115 HOH HOH . 
NA 7 HOH G 1 101 121 HOH HOH . 
NA 7 HOH G 2 102 134 HOH HOH . 
NA 7 HOH G 3 103 37 HOH HOH . 
NA 7 HOH G 4 104 175 HOH HOH . 
NA 7 HOH G 5 105 99 HOH HOH . 
NA 7 HOH G 6 106 50 HOH HOH . 
NA 7 HOH G 7 107 17 HOH HOH . 
NA 7 HOH G 8 108 58 HOH HOH . 
OA 7 HOH H 1 101 63 HOH HOH . 
OA 7 HOH H 2 102 72 HOH HOH . 
OA 7 HOH H 3 103 51 HOH HOH . 
OA 7 HOH H 4 104 104 HOH HOH . 
OA 7 HOH H 5 105 39 HOH HOH . 
OA 7 HOH H 6 106 31 HOH HOH . 
OA 7 HOH H 7 107 32 HOH HOH . 
OA 7 HOH H 8 108 170 HOH HOH . 
OA 7 HOH H 9 109 8 HOH HOH . 
OA 7 HOH H 10 110 55 HOH HOH . 
OA 7 HOH H 11 111 167 HOH HOH . 
OA 7 HOH H 12 112 118 HOH HOH . 
PA 7 HOH I 1 301 16 HOH HOH . 
PA 7 HOH I 2 302 76 HOH HOH . 
PA 7 HOH I 3 303 126 HOH HOH . 
PA 7 HOH I 4 304 33 HOH HOH . 
PA 7 HOH I 5 305 171 HOH HOH . 
PA 7 HOH I 6 306 145 HOH HOH . 
PA 7 HOH I 7 307 9 HOH HOH . 
PA 7 HOH I 8 308 24 HOH HOH . 
PA 7 HOH I 9 309 3 HOH HOH . 
PA 7 HOH I 10 310 128 HOH HOH . 
PA 7 HOH I 11 311 77 HOH HOH . 
PA 7 HOH I 12 312 123 HOH HOH . 
PA 7 HOH I 13 313 143 HOH HOH . 
PA 7 HOH I 14 314 52 HOH HOH . 
QA 7 HOH J 1 301 109 HOH HOH . 
QA 7 HOH J 2 302 177 HOH HOH . 
QA 7 HOH J 3 303 103 HOH HOH . 
QA 7 HOH J 4 304 34 HOH HOH . 
QA 7 HOH J 5 305 38 HOH HOH . 
QA 7 HOH J 6 306 178 HOH HOH . 
QA 7 HOH J 7 307 139 HOH HOH . 
QA 7 HOH J 8 308 98 HOH HOH . 
QA 7 HOH J 9 309 82 HOH HOH . 
QA 7 HOH J 10 310 165 HOH HOH . 
QA 7 HOH J 11 311 12 HOH HOH . 
QA 7 HOH J 12 312 176 HOH HOH . 
QA 7 HOH J 13 313 164 HOH HOH . 
QA 7 HOH J 14 314 166 HOH HOH . 
QA 7 HOH J 15 315 153 HOH HOH . 
QA 7 HOH J 16 316 56 HOH HOH . 
QA 7 HOH J 17 317 140 HOH HOH . 
RA 7 HOH K 1 301 179 HOH HOH . 
RA 7 HOH K 2 302 117 HOH HOH . 
RA 7 HOH K 3 303 113 HOH HOH . 
RA 7 HOH K 4 304 183 HOH HOH . 
RA 7 HOH K 5 305 184 HOH HOH . 
RA 7 HOH K 6 306 45 HOH HOH . 
RA 7 HOH K 7 307 54 HOH HOH . 
SA 7 HOH L 1 301 108 HOH HOH . 
SA 7 HOH L 2 302 80 HOH HOH . 
SA 7 HOH L 3 303 71 HOH HOH . 
SA 7 HOH L 4 304 70 HOH HOH . 
SA 7 HOH L 5 305 26 HOH HOH . 
SA 7 HOH L 6 306 66 HOH HOH . 
SA 7 HOH L 7 307 142 HOH HOH . 
SA 7 HOH L 8 308 67 HOH HOH . 
TA 7 HOH M 1 301 61 HOH HOH . 
TA 7 HOH M 2 302 47 HOH HOH . 
TA 7 HOH M 3 303 15 HOH HOH . 
TA 7 HOH M 4 304 163 HOH HOH . 
TA 7 HOH M 5 305 21 HOH HOH . 
TA 7 HOH M 6 306 93 HOH HOH . 
TA 7 HOH M 7 307 81 HOH HOH . 
TA 7 HOH M 8 308 137 HOH HOH . 
TA 7 HOH M 9 309 74 HOH HOH . 
TA 7 HOH M 10 310 48 HOH HOH . 
TA 7 HOH M 11 311 168 HOH HOH . 
TA 7 HOH M 12 312 85 HOH HOH . 
TA 7 HOH M 13 313 43 HOH HOH . 
TA 7 HOH M 14 314 116 HOH HOH . 
TA 7 HOH M 15 315 101 HOH HOH . 
TA 7 HOH M 16 316 68 HOH HOH . 
TA 7 HOH M 17 317 69 HOH HOH . 
TA 7 HOH M 18 318 120 HOH HOH . 
TA 7 HOH M 19 319 133 HOH HOH . 
UA 7 HOH N 1 301 89 HOH HOH . 
UA 7 HOH N 2 302 185 HOH HOH . 
UA 7 HOH N 3 303 129 HOH HOH . 
UA 7 HOH N 4 304 114 HOH HOH . 
UA 7 HOH N 5 305 186 HOH HOH . 
UA 7 HOH N 6 306 29 HOH HOH . 
UA 7 HOH N 7 307 146 HOH HOH . 
UA 7 HOH N 8 308 150 HOH HOH . 
UA 7 HOH N 9 309 124 HOH HOH . 
UA 7 HOH N 10 310 131 HOH HOH . 
UA 7 HOH N 11 311 130 HOH HOH . 
UA 7 HOH N 12 312 79 HOH HOH . 
UA 7 HOH N 13 313 152 HOH HOH . 
UA 7 HOH N 14 314 5 HOH HOH . 
UA 7 HOH N 15 315 88 HOH HOH . 
UA 7 HOH N 16 316 1 HOH HOH . 
UA 7 HOH N 17 317 136 HOH HOH . 
UA 7 HOH N 18 318 135 HOH HOH . 
UA 7 HOH N 19 319 11 HOH HOH . 
UA 7 HOH N 20 320 148 HOH HOH . 
UA 7 HOH N 21 321 86 HOH HOH . 
UA 7 HOH N 22 322 151 HOH HOH . 
VA 7 HOH O 1 301 180 HOH HOH . 
VA 7 HOH O 2 302 42 HOH HOH . 
VA 7 HOH O 3 303 111 HOH HOH . 
VA 7 HOH O 4 304 6 HOH HOH . 
VA 7 HOH O 5 305 30 HOH HOH . 
VA 7 HOH O 6 306 18 HOH HOH . 
VA 7 HOH O 7 307 181 HOH HOH . 
VA 7 HOH O 8 308 182 HOH HOH . 
VA 7 HOH O 9 309 154 HOH HOH . 
VA 7 HOH O 10 310 83 HOH HOH . 
VA 7 HOH O 11 311 158 HOH HOH . 
VA 7 HOH O 12 312 23 HOH HOH . 
VA 7 HOH O 13 313 7 HOH HOH . 
VA 7 HOH O 14 314 105 HOH HOH . 
VA 7 HOH O 15 315 46 HOH HOH . 
VA 7 HOH O 16 316 107 HOH HOH . 
VA 7 HOH O 17 317 84 HOH HOH . 
VA 7 HOH O 18 318 14 HOH HOH . 
VA 7 HOH O 19 319 57 HOH HOH . 
VA 7 HOH O 20 320 110 HOH HOH . 
VA 7 HOH O 21 321 64 HOH HOH . 
VA 7 HOH O 22 322 94 HOH HOH . 
WA 7 HOH P 1 301 49 HOH HOH . 
WA 7 HOH P 2 302 157 HOH HOH . 
WA 7 HOH P 3 303 172 HOH HOH . 
WA 7 HOH P 4 304 87 HOH HOH . 
WA 7 HOH P 5 305 4 HOH HOH . 
WA 7 HOH P 6 306 160 HOH HOH . 
WA 7 HOH P 7 307 159 HOH HOH . 
WA 7 HOH P 8 308 90 HOH HOH . 
WA 7 HOH P 9 309 59 HOH HOH . 
WA 7 HOH P 10 310 41 HOH HOH . 
WA 7 HOH P 11 311 75 HOH HOH . 
WA 7 HOH P 12 312 91 HOH HOH . 
WA 7 HOH P 13 313 65 HOH HOH . 
WA 7 HOH P 14 314 62 HOH HOH . 
WA 7 HOH P 15 315 25 HOH HOH . 
WA 7 HOH P 16 316 60 HOH HOH . 
WA 7 HOH P 17 317 106 HOH HOH . 
WA 7 HOH P 18 318 161 HOH HOH . 
WA 7 HOH P 19 319 147 HOH HOH . 
WA 7 HOH P 20 320 132 HOH HOH . 
WA 7 HOH P 21 321 35 HOH HOH . 
WA 7 HOH P 22 322 44 HOH HOH . 
WA 7 HOH P 23 323 149 HOH HOH . 
WA 7 HOH P 24 324 100 HOH HOH . 
WA 7 HOH P 25 325 156 HOH HOH . 
WA 7 HOH P 26 326 53 HOH HOH . 
WA 7 HOH P 27 327 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Q 3 7.109 -29.554 -5.835 1 93.24 ? C1 EDO 101 C 1 
HETATM 2 O O1 EDO . . . Q 3 6.411 -28.323 -5.532 1 80.4 ? O1 EDO 101 C 1 
HETATM 3 C C2 EDO . . . Q 3 8.601 -29.524 -6.2 1 92.68 ? C2 EDO 101 C 1 
HETATM 4 O O2 EDO . . . Q 3 9.271 -28.251 -6.368 1 85.91 ? O2 EDO 101 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#