data_7NMP # _model_server_result.job_id uaY123k02e4DyjY0Z1cT3w _model_server_result.datetime_utc '2024-11-26 10:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 7NMP # _exptl.entry_id 7NMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 134.16 _cell.angle_gamma 90 _cell.entry_id 7NMP _cell.length_a 91.985 _cell.length_b 52.022 _cell.length_c 64.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 7NMP _atom_sites.fract_transf_matrix[1][1] 0.010871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010559 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 301 1 FMN FMN . C 3 DMS A 1 302 1 DMS DMS . D 4 EDO A 1 303 1 EDO EDO . E 5 CL A 1 304 1 CL CL . F 4 EDO A 1 305 1 EDO EDO . G 4 EDO A 1 306 1 EDO EDO . H 6 HQE A 1 307 1 HQE 00E . I 7 HOH A 1 401 185 HOH HOH . I 7 HOH A 2 402 243 HOH HOH . I 7 HOH A 3 403 330 HOH HOH . I 7 HOH A 4 404 131 HOH HOH . I 7 HOH A 5 405 73 HOH HOH . I 7 HOH A 6 406 237 HOH HOH . I 7 HOH A 7 407 300 HOH HOH . I 7 HOH A 8 408 270 HOH HOH . I 7 HOH A 9 409 181 HOH HOH . I 7 HOH A 10 410 139 HOH HOH . I 7 HOH A 11 411 149 HOH HOH . I 7 HOH A 12 412 325 HOH HOH . I 7 HOH A 13 413 86 HOH HOH . I 7 HOH A 14 414 327 HOH HOH . I 7 HOH A 15 415 357 HOH HOH . I 7 HOH A 16 416 106 HOH HOH . I 7 HOH A 17 417 28 HOH HOH . I 7 HOH A 18 418 147 HOH HOH . I 7 HOH A 19 419 94 HOH HOH . I 7 HOH A 20 420 194 HOH HOH . I 7 HOH A 21 421 128 HOH HOH . I 7 HOH A 22 422 161 HOH HOH . I 7 HOH A 23 423 101 HOH HOH . I 7 HOH A 24 424 3 HOH HOH . I 7 HOH A 25 425 133 HOH HOH . I 7 HOH A 26 426 180 HOH HOH . I 7 HOH A 27 427 140 HOH HOH . I 7 HOH A 28 428 178 HOH HOH . I 7 HOH A 29 429 103 HOH HOH . I 7 HOH A 30 430 290 HOH HOH . I 7 HOH A 31 431 197 HOH HOH . I 7 HOH A 32 432 10 HOH HOH . I 7 HOH A 33 433 99 HOH HOH . I 7 HOH A 34 434 90 HOH HOH . I 7 HOH A 35 435 351 HOH HOH . I 7 HOH A 36 436 367 HOH HOH . I 7 HOH A 37 437 195 HOH HOH . I 7 HOH A 38 438 166 HOH HOH . I 7 HOH A 39 439 241 HOH HOH . I 7 HOH A 40 440 246 HOH HOH . I 7 HOH A 41 441 111 HOH HOH . I 7 HOH A 42 442 37 HOH HOH . I 7 HOH A 43 443 19 HOH HOH . I 7 HOH A 44 444 177 HOH HOH . I 7 HOH A 45 445 134 HOH HOH . I 7 HOH A 46 446 6 HOH HOH . I 7 HOH A 47 447 65 HOH HOH . I 7 HOH A 48 448 45 HOH HOH . I 7 HOH A 49 449 156 HOH HOH . I 7 HOH A 50 450 105 HOH HOH . I 7 HOH A 51 451 110 HOH HOH . I 7 HOH A 52 452 162 HOH HOH . I 7 HOH A 53 453 143 HOH HOH . I 7 HOH A 54 454 21 HOH HOH . I 7 HOH A 55 455 52 HOH HOH . I 7 HOH A 56 456 44 HOH HOH . I 7 HOH A 57 457 199 HOH HOH . I 7 HOH A 58 458 68 HOH HOH . I 7 HOH A 59 459 29 HOH HOH . I 7 HOH A 60 460 7 HOH HOH . I 7 HOH A 61 461 15 HOH HOH . I 7 HOH A 62 462 142 HOH HOH . I 7 HOH A 63 463 79 HOH HOH . I 7 HOH A 64 464 12 HOH HOH . I 7 HOH A 65 465 31 HOH HOH . I 7 HOH A 66 466 58 HOH HOH . I 7 HOH A 67 467 114 HOH HOH . I 7 HOH A 68 468 26 HOH HOH . I 7 HOH A 69 469 145 HOH HOH . I 7 HOH A 70 470 355 HOH HOH . I 7 HOH A 71 471 75 HOH HOH . I 7 HOH A 72 472 82 HOH HOH . I 7 HOH A 73 473 116 HOH HOH . I 7 HOH A 74 474 326 HOH HOH . I 7 HOH A 75 475 373 HOH HOH . I 7 HOH A 76 476 27 HOH HOH . I 7 HOH A 77 477 282 HOH HOH . I 7 HOH A 78 478 62 HOH HOH . I 7 HOH A 79 479 66 HOH HOH . I 7 HOH A 80 480 77 HOH HOH . I 7 HOH A 81 481 93 HOH HOH . I 7 HOH A 82 482 349 HOH HOH . I 7 HOH A 83 483 64 HOH HOH . I 7 HOH A 84 484 173 HOH HOH . I 7 HOH A 85 485 1 HOH HOH . I 7 HOH A 86 486 381 HOH HOH . I 7 HOH A 87 487 60 HOH HOH . I 7 HOH A 88 488 36 HOH HOH . I 7 HOH A 89 489 96 HOH HOH . I 7 HOH A 90 490 17 HOH HOH . I 7 HOH A 91 491 48 HOH HOH . I 7 HOH A 92 492 23 HOH HOH . I 7 HOH A 93 493 148 HOH HOH . I 7 HOH A 94 494 126 HOH HOH . I 7 HOH A 95 495 16 HOH HOH . I 7 HOH A 96 496 95 HOH HOH . I 7 HOH A 97 497 54 HOH HOH . I 7 HOH A 98 498 24 HOH HOH . I 7 HOH A 99 499 176 HOH HOH . I 7 HOH A 100 500 89 HOH HOH . I 7 HOH A 101 501 41 HOH HOH . I 7 HOH A 102 502 288 HOH HOH . I 7 HOH A 103 503 72 HOH HOH . I 7 HOH A 104 504 81 HOH HOH . I 7 HOH A 105 505 51 HOH HOH . I 7 HOH A 106 506 157 HOH HOH . I 7 HOH A 107 507 88 HOH HOH . I 7 HOH A 108 508 25 HOH HOH . I 7 HOH A 109 509 264 HOH HOH . I 7 HOH A 110 510 222 HOH HOH . I 7 HOH A 111 511 71 HOH HOH . I 7 HOH A 112 512 112 HOH HOH . I 7 HOH A 113 513 56 HOH HOH . I 7 HOH A 114 514 5 HOH HOH . I 7 HOH A 115 515 150 HOH HOH . I 7 HOH A 116 516 13 HOH HOH . I 7 HOH A 117 517 169 HOH HOH . I 7 HOH A 118 518 130 HOH HOH . I 7 HOH A 119 519 74 HOH HOH . I 7 HOH A 120 520 50 HOH HOH . I 7 HOH A 121 521 188 HOH HOH . I 7 HOH A 122 522 9 HOH HOH . I 7 HOH A 123 523 32 HOH HOH . I 7 HOH A 124 524 409 HOH HOH . I 7 HOH A 125 525 146 HOH HOH . I 7 HOH A 126 526 69 HOH HOH . I 7 HOH A 127 527 49 HOH HOH . I 7 HOH A 128 528 361 HOH HOH . I 7 HOH A 129 529 196 HOH HOH . I 7 HOH A 130 530 47 HOH HOH . I 7 HOH A 131 531 216 HOH HOH . I 7 HOH A 132 532 175 HOH HOH . I 7 HOH A 133 533 220 HOH HOH . I 7 HOH A 134 534 18 HOH HOH . I 7 HOH A 135 535 40 HOH HOH . I 7 HOH A 136 536 189 HOH HOH . I 7 HOH A 137 537 234 HOH HOH . I 7 HOH A 138 538 203 HOH HOH . I 7 HOH A 139 539 30 HOH HOH . I 7 HOH A 140 540 2 HOH HOH . I 7 HOH A 141 541 8 HOH HOH . I 7 HOH A 142 542 43 HOH HOH . I 7 HOH A 143 543 124 HOH HOH . I 7 HOH A 144 544 206 HOH HOH . I 7 HOH A 145 545 78 HOH HOH . I 7 HOH A 146 546 34 HOH HOH . I 7 HOH A 147 547 378 HOH HOH . I 7 HOH A 148 548 46 HOH HOH . I 7 HOH A 149 549 159 HOH HOH . I 7 HOH A 150 550 87 HOH HOH . I 7 HOH A 151 551 33 HOH HOH . I 7 HOH A 152 552 14 HOH HOH . I 7 HOH A 153 553 4 HOH HOH . I 7 HOH A 154 554 55 HOH HOH . I 7 HOH A 155 555 217 HOH HOH . I 7 HOH A 156 556 20 HOH HOH . I 7 HOH A 157 557 184 HOH HOH . I 7 HOH A 158 558 61 HOH HOH . I 7 HOH A 159 559 117 HOH HOH . I 7 HOH A 160 560 100 HOH HOH . I 7 HOH A 161 561 164 HOH HOH . I 7 HOH A 162 562 97 HOH HOH . I 7 HOH A 163 563 252 HOH HOH . I 7 HOH A 164 564 230 HOH HOH . I 7 HOH A 165 565 137 HOH HOH . I 7 HOH A 166 566 135 HOH HOH . I 7 HOH A 167 567 298 HOH HOH . I 7 HOH A 168 568 224 HOH HOH . I 7 HOH A 169 569 115 HOH HOH . I 7 HOH A 170 570 287 HOH HOH . I 7 HOH A 171 571 59 HOH HOH . I 7 HOH A 172 572 67 HOH HOH . I 7 HOH A 173 573 108 HOH HOH . I 7 HOH A 174 574 39 HOH HOH . I 7 HOH A 175 575 152 HOH HOH . I 7 HOH A 176 576 362 HOH HOH . I 7 HOH A 177 577 98 HOH HOH . I 7 HOH A 178 578 76 HOH HOH . I 7 HOH A 179 579 275 HOH HOH . I 7 HOH A 180 580 63 HOH HOH . I 7 HOH A 181 581 109 HOH HOH . I 7 HOH A 182 582 91 HOH HOH . I 7 HOH A 183 583 171 HOH HOH . I 7 HOH A 184 584 38 HOH HOH . I 7 HOH A 185 585 215 HOH HOH . I 7 HOH A 186 586 22 HOH HOH . I 7 HOH A 187 587 364 HOH HOH . I 7 HOH A 188 588 121 HOH HOH . I 7 HOH A 189 589 337 HOH HOH . I 7 HOH A 190 590 200 HOH HOH . I 7 HOH A 191 591 315 HOH HOH . I 7 HOH A 192 592 11 HOH HOH . I 7 HOH A 193 593 231 HOH HOH . I 7 HOH A 194 594 141 HOH HOH . I 7 HOH A 195 595 42 HOH HOH . I 7 HOH A 196 596 179 HOH HOH . I 7 HOH A 197 597 239 HOH HOH . I 7 HOH A 198 598 80 HOH HOH . I 7 HOH A 199 599 299 HOH HOH . I 7 HOH A 200 600 356 HOH HOH . I 7 HOH A 201 601 235 HOH HOH . I 7 HOH A 202 602 289 HOH HOH . I 7 HOH A 203 603 144 HOH HOH . I 7 HOH A 204 604 151 HOH HOH . I 7 HOH A 205 605 305 HOH HOH . I 7 HOH A 206 606 345 HOH HOH . I 7 HOH A 207 607 372 HOH HOH . I 7 HOH A 208 608 358 HOH HOH . I 7 HOH A 209 609 119 HOH HOH . I 7 HOH A 210 610 375 HOH HOH . I 7 HOH A 211 611 154 HOH HOH . I 7 HOH A 212 612 209 HOH HOH . I 7 HOH A 213 613 324 HOH HOH . I 7 HOH A 214 614 343 HOH HOH . I 7 HOH A 215 615 236 HOH HOH . I 7 HOH A 216 616 182 HOH HOH . I 7 HOH A 217 617 85 HOH HOH . I 7 HOH A 218 618 368 HOH HOH . I 7 HOH A 219 619 53 HOH HOH . I 7 HOH A 220 620 244 HOH HOH . I 7 HOH A 221 621 262 HOH HOH . I 7 HOH A 222 622 129 HOH HOH . I 7 HOH A 223 623 192 HOH HOH . I 7 HOH A 224 624 102 HOH HOH . I 7 HOH A 225 625 163 HOH HOH . I 7 HOH A 226 626 277 HOH HOH . I 7 HOH A 227 627 202 HOH HOH . I 7 HOH A 228 628 104 HOH HOH . I 7 HOH A 229 629 257 HOH HOH . I 7 HOH A 230 630 183 HOH HOH . I 7 HOH A 231 631 339 HOH HOH . I 7 HOH A 232 632 127 HOH HOH . I 7 HOH A 233 633 118 HOH HOH . I 7 HOH A 234 634 198 HOH HOH . I 7 HOH A 235 635 336 HOH HOH . I 7 HOH A 236 636 242 HOH HOH . I 7 HOH A 237 637 120 HOH HOH . I 7 HOH A 238 638 172 HOH HOH . I 7 HOH A 239 639 155 HOH HOH . I 7 HOH A 240 640 35 HOH HOH . I 7 HOH A 241 641 253 HOH HOH . I 7 HOH A 242 642 57 HOH HOH . I 7 HOH A 243 643 160 HOH HOH . I 7 HOH A 244 644 193 HOH HOH . I 7 HOH A 245 645 346 HOH HOH . I 7 HOH A 246 646 83 HOH HOH . I 7 HOH A 247 647 254 HOH HOH . I 7 HOH A 248 648 208 HOH HOH . I 7 HOH A 249 649 136 HOH HOH . I 7 HOH A 250 650 333 HOH HOH . I 7 HOH A 251 651 212 HOH HOH . I 7 HOH A 252 652 353 HOH HOH . I 7 HOH A 253 653 165 HOH HOH . I 7 HOH A 254 654 292 HOH HOH . I 7 HOH A 255 655 338 HOH HOH . I 7 HOH A 256 656 113 HOH HOH . I 7 HOH A 257 657 138 HOH HOH . I 7 HOH A 258 658 125 HOH HOH . I 7 HOH A 259 659 227 HOH HOH . I 7 HOH A 260 660 233 HOH HOH . I 7 HOH A 261 661 205 HOH HOH . I 7 HOH A 262 662 273 HOH HOH . I 7 HOH A 263 663 168 HOH HOH . I 7 HOH A 264 664 229 HOH HOH . I 7 HOH A 265 665 219 HOH HOH . I 7 HOH A 266 666 294 HOH HOH . I 7 HOH A 267 667 107 HOH HOH . I 7 HOH A 268 668 167 HOH HOH . I 7 HOH A 269 669 226 HOH HOH . I 7 HOH A 270 670 211 HOH HOH . I 7 HOH A 271 671 302 HOH HOH . I 7 HOH A 272 672 314 HOH HOH . I 7 HOH A 273 673 122 HOH HOH . I 7 HOH A 274 674 258 HOH HOH . I 7 HOH A 275 675 92 HOH HOH . I 7 HOH A 276 676 223 HOH HOH . I 7 HOH A 277 677 319 HOH HOH . I 7 HOH A 278 678 308 HOH HOH . I 7 HOH A 279 679 385 HOH HOH . I 7 HOH A 280 680 379 HOH HOH . I 7 HOH A 281 681 365 HOH HOH . I 7 HOH A 282 682 291 HOH HOH . I 7 HOH A 283 683 153 HOH HOH . I 7 HOH A 284 684 276 HOH HOH . I 7 HOH A 285 685 334 HOH HOH . I 7 HOH A 286 686 84 HOH HOH . I 7 HOH A 287 687 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . G 4 15.105 -46.311 12.049 0.32 23.36 ? C1 EDO 306 A 1 HETATM 2 C C1 EDO . B . G 4 15.315 -47.415 11.397 0.32 27.55 ? C1 EDO 306 A 1 HETATM 3 C C1 EDO . C . G 4 12.939 -47.628 12.465 0.36 24.09 ? C1 EDO 306 A 1 HETATM 4 O O1 EDO . A . G 4 14.164 -46.819 11.123 0.32 24.72 ? O1 EDO 306 A 1 HETATM 5 O O1 EDO . B . G 4 14.625 -46.702 12.411 0.32 28.37 ? O1 EDO 306 A 1 HETATM 6 O O1 EDO . C . G 4 11.634 -47.126 12.277 0.36 25.43 ? O1 EDO 306 A 1 HETATM 7 C C2 EDO . A . G 4 16.423 -46.046 11.43 0.32 23.69 ? C2 EDO 306 A 1 HETATM 8 C C2 EDO . B . G 4 16.347 -46.603 10.7 0.32 26.39 ? C2 EDO 306 A 1 HETATM 9 C C2 EDO . C . G 4 13.951 -46.977 11.607 0.36 22.86 ? C2 EDO 306 A 1 HETATM 10 O O2 EDO . A . G 4 16.468 -46.44 10.065 0.32 26.42 ? O2 EDO 306 A 1 HETATM 11 O O2 EDO . B . G 4 16.997 -47.272 9.632 0.32 25.96 ? O2 EDO 306 A 1 HETATM 12 O O2 EDO . C . G 4 13.829 -47.332 10.245 0.36 22.88 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #