data_7NMX # _model_server_result.job_id xxsi6AiHXHtUf00oDGWHhw _model_server_result.datetime_utc '2024-11-16 07:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7NMX # _exptl.entry_id 7NMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NMX _cell.length_a 82.469 _cell.length_b 111.993 _cell.length_c 62.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LEU 6 P LEU 174 1_555 B N SEP 7 P SEP 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C SEP 7 P SEP 175 1_555 B N GLU 8 P GLU 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A OE1 GLU 7 A GLU 2 1_555 F MG MG . A MG 304 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A OE1 GLU 40 A GLU 35 1_555 D CA CA . A CA 302 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc4 A OE2 GLU 40 A GLU 35 1_555 D CA CA . A CA 302 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 A O GLU 115 A GLU 110 1_555 D CA CA . A CA 302 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OE2 GLU 193 A GLU 188 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc7 D CA CA . A CA 302 1_555 J O HOH . A HOH 520 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc8 D CA CA . A CA 302 1_555 J O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 D CA CA . A CA 302 1_555 J O HOH . A HOH 567 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 F MG MG . A MG 304 1_555 J O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc11 F MG MG . A MG 304 1_555 J O HOH . A HOH 442 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc12 F MG MG . A MG 304 1_555 J O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 F MG MG . A MG 304 1_555 J O HOH . A HOH 465 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc14 G CA CA . A CA 305 1_555 J O HOH . A HOH 583 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NMX _atom_sites.fract_transf_matrix[1][1] 0.012126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K7Q A 1 301 1 K7Q LIG . D 4 CA A 1 302 1 CA CA . E 5 CL A 1 303 2 CL CL . F 6 MG A 1 304 3 MG MG . G 4 CA A 1 305 1 CA CA . H 5 CL A 1 306 1 CL CL . I 5 CL A 1 307 2 CL CL . J 7 HOH A 1 401 2 HOH HOH . J 7 HOH A 2 402 140 HOH HOH . J 7 HOH A 3 403 85 HOH HOH . J 7 HOH A 4 404 190 HOH HOH . J 7 HOH A 5 405 18 HOH HOH . J 7 HOH A 6 406 141 HOH HOH . J 7 HOH A 7 407 57 HOH HOH . J 7 HOH A 8 408 51 HOH HOH . J 7 HOH A 9 409 227 HOH HOH . J 7 HOH A 10 410 191 HOH HOH . J 7 HOH A 11 411 122 HOH HOH . J 7 HOH A 12 412 50 HOH HOH . J 7 HOH A 13 413 30 HOH HOH . J 7 HOH A 14 414 152 HOH HOH . J 7 HOH A 15 415 161 HOH HOH . J 7 HOH A 16 416 123 HOH HOH . J 7 HOH A 17 417 128 HOH HOH . J 7 HOH A 18 418 60 HOH HOH . J 7 HOH A 19 419 21 HOH HOH . J 7 HOH A 20 420 120 HOH HOH . J 7 HOH A 21 421 63 HOH HOH . J 7 HOH A 22 422 178 HOH HOH . J 7 HOH A 23 423 43 HOH HOH . J 7 HOH A 24 424 16 HOH HOH . J 7 HOH A 25 425 173 HOH HOH . J 7 HOH A 26 426 8 HOH HOH . J 7 HOH A 27 427 126 HOH HOH . J 7 HOH A 28 428 121 HOH HOH . J 7 HOH A 29 429 29 HOH HOH . J 7 HOH A 30 430 5 HOH HOH . J 7 HOH A 31 431 133 HOH HOH . J 7 HOH A 32 432 19 HOH HOH . J 7 HOH A 33 433 116 HOH HOH . J 7 HOH A 34 434 58 HOH HOH . J 7 HOH A 35 435 4 HOH HOH . J 7 HOH A 36 436 88 HOH HOH . J 7 HOH A 37 437 38 HOH HOH . J 7 HOH A 38 438 143 HOH HOH . J 7 HOH A 39 439 40 HOH HOH . J 7 HOH A 40 440 187 HOH HOH . J 7 HOH A 41 441 166 HOH HOH . J 7 HOH A 42 442 7 HOH HOH . J 7 HOH A 43 443 125 HOH HOH . J 7 HOH A 44 444 112 HOH HOH . J 7 HOH A 45 445 83 HOH HOH . J 7 HOH A 46 446 12 HOH HOH . J 7 HOH A 47 447 96 HOH HOH . J 7 HOH A 48 448 107 HOH HOH . J 7 HOH A 49 449 194 HOH HOH . J 7 HOH A 50 450 11 HOH HOH . J 7 HOH A 51 451 221 HOH HOH . J 7 HOH A 52 452 13 HOH HOH . J 7 HOH A 53 453 127 HOH HOH . J 7 HOH A 54 454 72 HOH HOH . J 7 HOH A 55 455 156 HOH HOH . J 7 HOH A 56 456 45 HOH HOH . J 7 HOH A 57 457 157 HOH HOH . J 7 HOH A 58 458 3 HOH HOH . J 7 HOH A 59 459 28 HOH HOH . J 7 HOH A 60 460 175 HOH HOH . J 7 HOH A 61 461 86 HOH HOH . J 7 HOH A 62 462 22 HOH HOH . J 7 HOH A 63 463 27 HOH HOH . J 7 HOH A 64 464 73 HOH HOH . J 7 HOH A 65 465 124 HOH HOH . J 7 HOH A 66 466 103 HOH HOH . J 7 HOH A 67 467 155 HOH HOH . J 7 HOH A 68 468 98 HOH HOH . J 7 HOH A 69 469 56 HOH HOH . J 7 HOH A 70 470 172 HOH HOH . J 7 HOH A 71 471 198 HOH HOH . J 7 HOH A 72 472 71 HOH HOH . J 7 HOH A 73 473 149 HOH HOH . J 7 HOH A 74 474 55 HOH HOH . J 7 HOH A 75 475 80 HOH HOH . J 7 HOH A 76 476 99 HOH HOH . J 7 HOH A 77 477 81 HOH HOH . J 7 HOH A 78 478 69 HOH HOH . J 7 HOH A 79 479 67 HOH HOH . J 7 HOH A 80 480 44 HOH HOH . J 7 HOH A 81 481 6 HOH HOH . J 7 HOH A 82 482 24 HOH HOH . J 7 HOH A 83 483 90 HOH HOH . J 7 HOH A 84 484 158 HOH HOH . J 7 HOH A 85 485 163 HOH HOH . J 7 HOH A 86 486 101 HOH HOH . J 7 HOH A 87 487 208 HOH HOH . J 7 HOH A 88 488 108 HOH HOH . J 7 HOH A 89 489 235 HOH HOH . J 7 HOH A 90 490 35 HOH HOH . J 7 HOH A 91 491 17 HOH HOH . J 7 HOH A 92 492 26 HOH HOH . J 7 HOH A 93 493 115 HOH HOH . J 7 HOH A 94 494 153 HOH HOH . J 7 HOH A 95 495 97 HOH HOH . J 7 HOH A 96 496 59 HOH HOH . J 7 HOH A 97 497 212 HOH HOH . J 7 HOH A 98 498 33 HOH HOH . J 7 HOH A 99 499 48 HOH HOH . J 7 HOH A 100 500 136 HOH HOH . J 7 HOH A 101 501 89 HOH HOH . J 7 HOH A 102 502 167 HOH HOH . J 7 HOH A 103 503 46 HOH HOH . J 7 HOH A 104 504 37 HOH HOH . J 7 HOH A 105 505 165 HOH HOH . J 7 HOH A 106 506 65 HOH HOH . J 7 HOH A 107 507 32 HOH HOH . J 7 HOH A 108 508 154 HOH HOH . J 7 HOH A 109 509 138 HOH HOH . J 7 HOH A 110 510 41 HOH HOH . J 7 HOH A 111 511 66 HOH HOH . J 7 HOH A 112 512 74 HOH HOH . J 7 HOH A 113 513 118 HOH HOH . J 7 HOH A 114 514 233 HOH HOH . J 7 HOH A 115 515 54 HOH HOH . J 7 HOH A 116 516 9 HOH HOH . J 7 HOH A 117 517 110 HOH HOH . J 7 HOH A 118 518 170 HOH HOH . J 7 HOH A 119 519 94 HOH HOH . J 7 HOH A 120 520 111 HOH HOH . J 7 HOH A 121 521 203 HOH HOH . J 7 HOH A 122 522 61 HOH HOH . J 7 HOH A 123 523 102 HOH HOH . J 7 HOH A 124 524 180 HOH HOH . J 7 HOH A 125 525 193 HOH HOH . J 7 HOH A 126 526 52 HOH HOH . J 7 HOH A 127 527 25 HOH HOH . J 7 HOH A 128 528 137 HOH HOH . J 7 HOH A 129 529 106 HOH HOH . J 7 HOH A 130 530 177 HOH HOH . J 7 HOH A 131 531 148 HOH HOH . J 7 HOH A 132 532 129 HOH HOH . J 7 HOH A 133 533 64 HOH HOH . J 7 HOH A 134 534 20 HOH HOH . J 7 HOH A 135 535 184 HOH HOH . J 7 HOH A 136 536 174 HOH HOH . J 7 HOH A 137 537 209 HOH HOH . J 7 HOH A 138 538 34 HOH HOH . J 7 HOH A 139 539 117 HOH HOH . J 7 HOH A 140 540 204 HOH HOH . J 7 HOH A 141 541 53 HOH HOH . J 7 HOH A 142 542 241 HOH HOH . J 7 HOH A 143 543 228 HOH HOH . J 7 HOH A 144 544 147 HOH HOH . J 7 HOH A 145 545 93 HOH HOH . J 7 HOH A 146 546 200 HOH HOH . J 7 HOH A 147 547 23 HOH HOH . J 7 HOH A 148 548 213 HOH HOH . J 7 HOH A 149 549 14 HOH HOH . J 7 HOH A 150 550 42 HOH HOH . J 7 HOH A 151 551 185 HOH HOH . J 7 HOH A 152 552 171 HOH HOH . J 7 HOH A 153 553 242 HOH HOH . J 7 HOH A 154 554 70 HOH HOH . J 7 HOH A 155 555 134 HOH HOH . J 7 HOH A 156 556 201 HOH HOH . J 7 HOH A 157 557 176 HOH HOH . J 7 HOH A 158 558 84 HOH HOH . J 7 HOH A 159 559 91 HOH HOH . J 7 HOH A 160 560 238 HOH HOH . J 7 HOH A 161 561 82 HOH HOH . J 7 HOH A 162 562 196 HOH HOH . J 7 HOH A 163 563 146 HOH HOH . J 7 HOH A 164 564 189 HOH HOH . J 7 HOH A 165 565 197 HOH HOH . J 7 HOH A 166 566 234 HOH HOH . J 7 HOH A 167 567 109 HOH HOH . J 7 HOH A 168 568 202 HOH HOH . J 7 HOH A 169 569 36 HOH HOH . J 7 HOH A 170 570 192 HOH HOH . J 7 HOH A 171 571 237 HOH HOH . J 7 HOH A 172 572 211 HOH HOH . J 7 HOH A 173 573 179 HOH HOH . J 7 HOH A 174 574 151 HOH HOH . J 7 HOH A 175 575 114 HOH HOH . J 7 HOH A 176 576 205 HOH HOH . J 7 HOH A 177 577 169 HOH HOH . J 7 HOH A 178 578 15 HOH HOH . J 7 HOH A 179 579 76 HOH HOH . J 7 HOH A 180 580 183 HOH HOH . J 7 HOH A 181 581 159 HOH HOH . J 7 HOH A 182 582 207 HOH HOH . J 7 HOH A 183 583 47 HOH HOH . J 7 HOH A 184 584 62 HOH HOH . J 7 HOH A 185 585 113 HOH HOH . J 7 HOH A 186 586 214 HOH HOH . J 7 HOH A 187 587 239 HOH HOH . J 7 HOH A 188 588 215 HOH HOH . J 7 HOH A 189 589 130 HOH HOH . J 7 HOH A 190 590 87 HOH HOH . J 7 HOH A 191 591 181 HOH HOH . J 7 HOH A 192 592 222 HOH HOH . J 7 HOH A 193 593 142 HOH HOH . J 7 HOH A 194 594 119 HOH HOH . J 7 HOH A 195 595 135 HOH HOH . J 7 HOH A 196 596 195 HOH HOH . J 7 HOH A 197 597 229 HOH HOH . J 7 HOH A 198 598 223 HOH HOH . J 7 HOH A 199 599 132 HOH HOH . J 7 HOH A 200 600 168 HOH HOH . J 7 HOH A 201 601 226 HOH HOH . J 7 HOH A 202 602 75 HOH HOH . J 7 HOH A 203 603 225 HOH HOH . J 7 HOH A 204 604 150 HOH HOH . J 7 HOH A 205 605 68 HOH HOH . J 7 HOH A 206 606 139 HOH HOH . J 7 HOH A 207 607 10 HOH HOH . J 7 HOH A 208 608 77 HOH HOH . J 7 HOH A 209 609 31 HOH HOH . J 7 HOH A 210 610 210 HOH HOH . J 7 HOH A 211 611 100 HOH HOH . J 7 HOH A 212 612 219 HOH HOH . J 7 HOH A 213 613 164 HOH HOH . J 7 HOH A 214 614 95 HOH HOH . J 7 HOH A 215 615 145 HOH HOH . J 7 HOH A 216 616 79 HOH HOH . J 7 HOH A 217 617 217 HOH HOH . J 7 HOH A 218 618 220 HOH HOH . J 7 HOH A 219 619 240 HOH HOH . J 7 HOH A 220 620 162 HOH HOH . J 7 HOH A 221 621 186 HOH HOH . J 7 HOH A 222 622 199 HOH HOH . K 7 HOH P 1 201 78 HOH HOH . K 7 HOH P 2 202 92 HOH HOH . K 7 HOH P 3 203 105 HOH HOH . K 7 HOH P 4 204 39 HOH HOH . K 7 HOH P 5 205 188 HOH HOH . K 7 HOH P 6 206 182 HOH HOH . K 7 HOH P 7 207 218 HOH HOH . K 7 HOH P 8 208 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -7.433 _atom_site.Cartn_y -22.614 _atom_site.Cartn_z 28.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.77 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #