data_7NN7 # _model_server_result.job_id '_aeV6LF4O7JB1gOjTjuOog' _model_server_result.datetime_utc '2025-01-10 23:13:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NN7 # _exptl.entry_id 7NN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.183 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'dimethyl 5-oxidanylbenzene-1,3-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NN7 _cell.length_a 174.156 _cell.length_b 174.156 _cell.length_c 72.057 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.057 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 72.057 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.057 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 O5' _chem_comp.formula_weight 210.183 _chem_comp.id 98W _chem_comp.mon_nstd_flag . _chem_comp.name 'dimethyl 5-oxidanylbenzene-1,3-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 98W sing 1 n n O02 C03 98W sing 2 n n C03 O04 98W doub 3 n n C03 C05 98W sing 4 n n C06 C05 98W doub 5 n y C06 C07 98W sing 6 n y O08 C07 98W sing 7 n n C05 C11 98W sing 8 n y C07 C09 98W doub 9 n y C11 C10 98W doub 10 n y C09 C10 98W sing 11 n y C10 C12 98W sing 12 n n C12 O14 98W sing 13 n n C12 O13 98W doub 14 n n O14 C15 98W sing 15 n n C15 H1 98W sing 16 n n C15 H2 98W sing 17 n n C15 H3 98W sing 18 n n C01 H4 98W sing 19 n n C01 H5 98W sing 20 n n C01 H6 98W sing 21 n n C06 H7 98W sing 22 n n O08 H8 98W sing 23 n n C09 H9 98W sing 24 n n C11 H10 98W sing 25 n n # _atom_sites.entry_id 7NN7 _atom_sites.fract_transf_matrix[1][1] 0.005742 _atom_sites.fract_transf_matrix[1][2] 0.003315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 98W A 1 301 1 98W LIG . C 3 EDO A 1 302 1 EDO EDO . D 4 SO4 A 1 303 1 SO4 SO4 . E 4 SO4 A 1 304 2 SO4 SO4 . F 5 HOH A 1 401 9 HOH HOH . F 5 HOH A 2 402 20 HOH HOH . F 5 HOH A 3 403 22 HOH HOH . F 5 HOH A 4 404 2 HOH HOH . F 5 HOH A 5 405 7 HOH HOH . F 5 HOH A 6 406 4 HOH HOH . F 5 HOH A 7 407 6 HOH HOH . F 5 HOH A 8 408 1 HOH HOH . F 5 HOH A 9 409 15 HOH HOH . F 5 HOH A 10 410 3 HOH HOH . F 5 HOH A 11 411 18 HOH HOH . F 5 HOH A 12 412 14 HOH HOH . F 5 HOH A 13 413 13 HOH HOH . F 5 HOH A 14 414 10 HOH HOH . F 5 HOH A 15 415 12 HOH HOH . F 5 HOH A 16 416 8 HOH HOH . F 5 HOH A 17 417 24 HOH HOH . F 5 HOH A 18 418 23 HOH HOH . F 5 HOH A 19 419 19 HOH HOH . F 5 HOH A 20 420 11 HOH HOH . F 5 HOH A 21 421 5 HOH HOH . F 5 HOH A 22 422 17 HOH HOH . F 5 HOH A 23 423 21 HOH HOH . F 5 HOH A 24 424 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 98W . . . B 2 10.7 -18.317 36.669 0.5 68.85 ? C10 98W 301 A 1 HETATM 2 C C15 98W . . . B 2 11.217 -16.109 39.665 0.5 78.14 ? C15 98W 301 A 1 HETATM 3 C C01 98W . . . B 2 8.662 -17.241 31.322 0.5 78.83 ? C01 98W 301 A 1 HETATM 4 O O02 98W . . . B 2 8.126 -17.806 32.486 0.5 78.38 ? O02 98W 301 A 1 HETATM 5 C C03 98W . . . B 2 8.572 -17.223 33.682 0.5 75.53 ? C03 98W 301 A 1 HETATM 6 O O04 98W . . . B 2 8.19 -16.145 33.997 0.5 77.9 ? O04 98W 301 A 1 HETATM 7 C C05 98W . . . B 2 9.528 -18.011 34.583 0.5 69.04 ? C05 98W 301 A 1 HETATM 8 C C06 98W . . . B 2 10.092 -19.177 34.098 0.5 68.3 ? C06 98W 301 A 1 HETATM 9 C C07 98W . . . B 2 10.962 -19.905 34.889 0.5 68.1 ? C07 98W 301 A 1 HETATM 10 O O08 98W . . . B 2 11.505 -21.09 34.39 0.5 73.72 ? O08 98W 301 A 1 HETATM 11 C C09 98W . . . B 2 11.264 -19.489 36.178 0.5 68.53 ? C09 98W 301 A 1 HETATM 12 C C11 98W . . . B 2 9.835 -17.582 35.866 0.5 67.08 ? C11 98W 301 A 1 HETATM 13 C C12 98W . . . B 2 11.025 -17.838 38.085 0.5 69.88 ? C12 98W 301 A 1 HETATM 14 O O13 98W . . . B 2 11.595 -18.541 38.858 0.5 65.95 ? O13 98W 301 A 1 HETATM 15 O O14 98W . . . B 2 10.623 -16.56 38.479 0.5 75.79 ? O14 98W 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #