data_7NN8 # _model_server_result.job_id uK1HJbpJ0S_ZNmOvypQlog _model_server_result.datetime_utc '2025-06-23 00:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7NN8 # _exptl.entry_id 7NN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.157 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1~{H}-indole-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NN8 _cell.length_a 174.647 _cell.length_b 174.647 _cell.length_c 72.118 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 72.118 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 72.118 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 72.118 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H6 N2' _chem_comp.formula_weight 142.157 _chem_comp.id 98Z _chem_comp.mon_nstd_flag . _chem_comp.name 1~{H}-indole-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 98Z trip 1 n n C02 C03 98Z sing 2 n n C03 C04 98Z doub 3 n y C03 C11 98Z sing 4 n y C04 N05 98Z sing 5 n y N05 C06 98Z sing 6 n y C11 C10 98Z doub 7 n y C11 C06 98Z sing 8 n y C10 C09 98Z sing 9 n y C06 C07 98Z doub 10 n y C09 C08 98Z doub 11 n y C07 C08 98Z sing 12 n y C10 H1 98Z sing 13 n n C04 H2 98Z sing 14 n n N05 H3 98Z sing 15 n n C07 H4 98Z sing 16 n n C08 H5 98Z sing 17 n n C09 H6 98Z sing 18 n n # _atom_sites.entry_id 7NN8 _atom_sites.fract_transf_matrix[1][1] 0.005726 _atom_sites.fract_transf_matrix[1][2] 0.003306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 98Z A 1 303 1 98Z LIG . E 4 EDO A 1 304 1 EDO EDO . F 5 HOH A 1 401 10 HOH HOH . F 5 HOH A 2 402 5 HOH HOH . F 5 HOH A 3 403 2 HOH HOH . F 5 HOH A 4 404 3 HOH HOH . F 5 HOH A 5 405 4 HOH HOH . F 5 HOH A 6 406 9 HOH HOH . F 5 HOH A 7 407 11 HOH HOH . F 5 HOH A 8 408 7 HOH HOH . F 5 HOH A 9 409 6 HOH HOH . F 5 HOH A 10 410 8 HOH HOH . F 5 HOH A 11 411 12 HOH HOH . F 5 HOH A 12 412 13 HOH HOH . F 5 HOH A 13 413 1 HOH HOH . F 5 HOH A 14 414 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 98Z . . . D 3 10.543 -17.115 37.031 0.5 73.14 ? C10 98Z 303 A 1 HETATM 2 N N01 98Z . . . D 3 9.23 -17.876 33.14 0.5 74.28 ? N01 98Z 303 A 1 HETATM 3 C C02 98Z . . . D 3 9.759 -18.343 34.024 0.5 74.04 ? C02 98Z 303 A 1 HETATM 4 C C03 98Z . . . D 3 10.472 -18.99 35.208 0.5 74.04 ? C03 98Z 303 A 1 HETATM 5 C C04 98Z . . . D 3 10.961 -20.29 35.262 0.5 71.9 ? C04 98Z 303 A 1 HETATM 6 N N05 98Z . . . D 3 11.515 -20.476 36.447 0.5 71.88 ? N05 98Z 303 A 1 HETATM 7 C C06 98Z . . . D 3 11.422 -19.354 37.204 0.5 73.63 ? C06 98Z 303 A 1 HETATM 8 C C07 98Z . . . D 3 11.857 -19.07 38.529 0.5 73.03 ? C07 98Z 303 A 1 HETATM 9 C C08 98Z . . . D 3 11.627 -17.816 39.078 0.5 73.85 ? C08 98Z 303 A 1 HETATM 10 C C09 98Z . . . D 3 10.97 -16.837 38.326 0.5 74.31 ? C09 98Z 303 A 1 HETATM 11 C C11 98Z . . . D 3 10.774 -18.396 36.469 0.5 74.06 ? C11 98Z 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 11 #