data_7NNP # _model_server_result.job_id 4t5TqztLwd53OK1jiKEOLQ _model_server_result.datetime_utc '2024-11-23 09:46:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nnp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":702}' # _entry.id 7NNP # _exptl.entry_id 7NNP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 505.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NNP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NNP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 112 A ASN 112 1_555 I RB RB . A RB 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc2 A O ASN 112 A ASN 112 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc3 A O THR 113 A THR 113 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc4 A O THR 230 A THR 230 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc5 A OG SER 343 A SER 343 1_555 I RB RB . A RB 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc6 A O SER 343 A SER 343 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc7 A O CYS 344 A CYS 344 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc8 A O GLY 369 A GLY 369 1_555 G RB RB . A RB 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc9 A O ASN 465 A ASN 465 1_555 H RB RB . A RB 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc10 A O ASN 467 A ASN 467 1_555 J RB RB . A RB 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc11 D O ILE 263 B ILE 263 1_555 O RB RB . B RB 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc12 D ND2 ASN 624 B ASN 624 1_555 O RB RB . B RB 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 7NNP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 RB A 1 601 602 RB RB . F 5 RB A 1 602 603 RB RB . G 5 RB A 1 603 605 RB RB . H 5 RB A 1 604 606 RB RB . I 5 RB A 1 605 607 RB RB . J 5 RB A 1 606 608 RB RB . K 6 CDL A 1 607 701 CDL CDL . L 5 RB B 1 701 601 RB RB . M 7 ACP B 1 702 701 ACP ACP . N 6 CDL B 1 703 801 CDL CDL . O 5 RB B 1 704 901 RB RB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . M 7 126.184 145.078 169.074 1 98.8 ? PG ACP 702 B 1 HETATM 2 O O1G ACP . . . M 7 126.182 145.278 167.594 1 98.8 ? O1G ACP 702 B 1 HETATM 3 O O2G ACP . . . M 7 125.8 146.361 169.844 1 98.8 ? O2G ACP 702 B 1 HETATM 4 O O3G ACP . . . M 7 125.207 143.963 169.506 1 98.8 ? O3G ACP 702 B 1 HETATM 5 P PB ACP . . . M 7 129.192 145.5 168.946 1 98.8 ? PB ACP 702 B 1 HETATM 6 O O1B ACP . . . M 7 128.972 145.667 167.463 1 98.8 ? O1B ACP 702 B 1 HETATM 7 O O2B ACP . . . M 7 130.508 144.692 169.151 1 98.8 ? O2B ACP 702 B 1 HETATM 8 C C3B ACP . . . M 7 127.798 144.576 169.684 1 98.8 ? C3B ACP 702 B 1 HETATM 9 P PA ACP . . . M 7 129.383 146.93 171.196 1 98.8 ? PA ACP 702 B 1 HETATM 10 O O1A ACP . . . M 7 130.085 145.748 171.733 1 98.8 ? O1A ACP 702 B 1 HETATM 11 O O2A ACP . . . M 7 127.955 147.133 171.701 1 98.8 ? O2A ACP 702 B 1 HETATM 12 O O3A ACP . . . M 7 129.336 146.974 169.595 1 98.8 ? O3A ACP 702 B 1 HETATM 13 O O5' ACP . . . M 7 130.199 148.235 171.544 1 98.8 ? O5' ACP 702 B 1 HETATM 14 C C5' ACP . . . M 7 129.529 149.471 171.869 1 98.8 ? C5' ACP 702 B 1 HETATM 15 C C4' ACP . . . M 7 130.54 150.449 172.413 1 98.8 ? C4' ACP 702 B 1 HETATM 16 O O4' ACP . . . M 7 130.006 151.088 173.594 1 98.8 ? O4' ACP 702 B 1 HETATM 17 C C3' ACP . . . M 7 131.87 149.838 172.846 1 98.8 ? C3' ACP 702 B 1 HETATM 18 O O3' ACP . . . M 7 132.933 150.77 172.688 1 98.8 ? O3' ACP 702 B 1 HETATM 19 C C2' ACP . . . M 7 131.617 149.517 174.319 1 98.8 ? C2' ACP 702 B 1 HETATM 20 O O2' ACP . . . M 7 132.826 149.487 175.069 1 98.8 ? O2' ACP 702 B 1 HETATM 21 C C1' ACP . . . M 7 130.749 150.705 174.738 1 98.8 ? C1' ACP 702 B 1 HETATM 22 N N9 ACP . . . M 7 129.815 150.407 175.818 1 98.8 ? N9 ACP 702 B 1 HETATM 23 C C8 ACP . . . M 7 129.388 149.17 176.224 1 98.8 ? C8 ACP 702 B 1 HETATM 24 N N7 ACP . . . M 7 128.544 149.196 177.226 1 98.8 ? N7 ACP 702 B 1 HETATM 25 C C5 ACP . . . M 7 128.407 150.547 177.504 1 98.8 ? C5 ACP 702 B 1 HETATM 26 C C6 ACP . . . M 7 127.646 151.249 178.459 1 98.8 ? C6 ACP 702 B 1 HETATM 27 N N6 ACP . . . M 7 126.849 150.659 179.355 1 98.8 ? N6 ACP 702 B 1 HETATM 28 N N1 ACP . . . M 7 127.734 152.598 178.465 1 98.8 ? N1 ACP 702 B 1 HETATM 29 C C2 ACP . . . M 7 128.529 153.195 177.573 1 98.8 ? C2 ACP 702 B 1 HETATM 30 N N3 ACP . . . M 7 129.289 152.639 176.627 1 98.8 ? N3 ACP 702 B 1 HETATM 31 C C4 ACP . . . M 7 129.181 151.306 176.641 1 98.8 ? C4 ACP 702 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #