data_7NNX # _model_server_result.job_id FBHG7glP98SoOkHCTeRnYw _model_server_result.datetime_utc '2024-11-02 13:41:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 7NNX # _exptl.entry_id 7NNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.095 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-benzoquinone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 133.92 _cell.angle_gamma 90 _cell.entry_id 7NNX _cell.length_a 91.767 _cell.length_b 51.963 _cell.length_c 64.686 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 90 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id HQE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HQE _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.812 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H4 O2' _chem_comp.formula_weight 108.095 _chem_comp.id PLQ _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-benzoquinone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'cyclohexa-2,5-diene-1,4-dione;QUINONE RING OF THE PLASTOQUINONE 9' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 PLQ doub 346 n n C5 C6 PLQ sing 347 n n C5 C4 PLQ sing 348 n n C6 C1 PLQ doub 349 n n C6 H6 PLQ sing 350 n n C4 C3 PLQ doub 351 n n C4 H4 PLQ sing 352 n n C3 C2 PLQ sing 353 n n C3 H3 PLQ sing 354 n n C2 O2 PLQ doub 355 n n C2 C1 PLQ sing 356 n n C1 H1 PLQ sing 357 n n # _atom_sites.entry_id 7NNX _atom_sites.fract_transf_matrix[1][1] 0.010897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010494 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HQE A 1 301 301 HQE HQE . C 3 FMN A 1 302 1 FMN FMN . D 4 DMS A 1 303 1 DMS DMS . E 5 EDO A 1 304 1 EDO EDO . F 5 EDO A 1 305 1 EDO EDO . G 6 CL A 1 306 1 CL CL . H 5 EDO A 1 307 1 EDO EDO . I 7 PLQ A 1 308 1 PLQ 00E . J 8 HOH A 1 401 330 HOH HOH . J 8 HOH A 2 402 237 HOH HOH . J 8 HOH A 3 403 300 HOH HOH . J 8 HOH A 4 404 139 HOH HOH . J 8 HOH A 5 405 106 HOH HOH . J 8 HOH A 6 406 147 HOH HOH . J 8 HOH A 7 407 77 HOH HOH . J 8 HOH A 8 408 86 HOH HOH . J 8 HOH A 9 409 243 HOH HOH . J 8 HOH A 10 410 99 HOH HOH . J 8 HOH A 11 411 73 HOH HOH . J 8 HOH A 12 412 361 HOH HOH . J 8 HOH A 13 413 194 HOH HOH . J 8 HOH A 14 414 131 HOH HOH . J 8 HOH A 15 415 325 HOH HOH . J 8 HOH A 16 416 241 HOH HOH . J 8 HOH A 17 417 180 HOH HOH . J 8 HOH A 18 418 327 HOH HOH . J 8 HOH A 19 419 93 HOH HOH . J 8 HOH A 20 420 176 HOH HOH . J 8 HOH A 21 421 66 HOH HOH . J 8 HOH A 22 422 28 HOH HOH . J 8 HOH A 23 423 134 HOH HOH . J 8 HOH A 24 424 101 HOH HOH . J 8 HOH A 25 425 133 HOH HOH . J 8 HOH A 26 426 3 HOH HOH . J 8 HOH A 27 427 65 HOH HOH . J 8 HOH A 28 428 111 HOH HOH . J 8 HOH A 29 429 58 HOH HOH . J 8 HOH A 30 430 6 HOH HOH . J 8 HOH A 31 431 181 HOH HOH . J 8 HOH A 32 432 128 HOH HOH . J 8 HOH A 33 433 105 HOH HOH . J 8 HOH A 34 434 270 HOH HOH . J 8 HOH A 35 435 27 HOH HOH . J 8 HOH A 36 436 21 HOH HOH . J 8 HOH A 37 437 103 HOH HOH . J 8 HOH A 38 438 199 HOH HOH . J 8 HOH A 39 439 110 HOH HOH . J 8 HOH A 40 440 166 HOH HOH . J 8 HOH A 41 441 52 HOH HOH . J 8 HOH A 42 442 96 HOH HOH . J 8 HOH A 43 443 335 HOH HOH . J 8 HOH A 44 444 81 HOH HOH . J 8 HOH A 45 445 10 HOH HOH . J 8 HOH A 46 446 5 HOH HOH . J 8 HOH A 47 447 381 HOH HOH . J 8 HOH A 48 448 29 HOH HOH . J 8 HOH A 49 449 48 HOH HOH . J 8 HOH A 50 450 161 HOH HOH . J 8 HOH A 51 451 94 HOH HOH . J 8 HOH A 52 452 355 HOH HOH . J 8 HOH A 53 453 142 HOH HOH . J 8 HOH A 54 454 19 HOH HOH . J 8 HOH A 55 455 72 HOH HOH . J 8 HOH A 56 456 410 HOH HOH . J 8 HOH A 57 457 12 HOH HOH . J 8 HOH A 58 458 188 HOH HOH . J 8 HOH A 59 459 95 HOH HOH . J 8 HOH A 60 460 349 HOH HOH . J 8 HOH A 61 461 357 HOH HOH . J 8 HOH A 62 462 56 HOH HOH . J 8 HOH A 63 463 54 HOH HOH . J 8 HOH A 64 464 373 HOH HOH . J 8 HOH A 65 465 26 HOH HOH . J 8 HOH A 66 466 64 HOH HOH . J 8 HOH A 67 467 79 HOH HOH . J 8 HOH A 68 468 197 HOH HOH . J 8 HOH A 69 469 31 HOH HOH . J 8 HOH A 70 470 7 HOH HOH . J 8 HOH A 71 471 114 HOH HOH . J 8 HOH A 72 472 143 HOH HOH . J 8 HOH A 73 473 74 HOH HOH . J 8 HOH A 74 474 37 HOH HOH . J 8 HOH A 75 475 177 HOH HOH . J 8 HOH A 76 476 45 HOH HOH . J 8 HOH A 77 477 112 HOH HOH . J 8 HOH A 78 478 68 HOH HOH . J 8 HOH A 79 479 222 HOH HOH . J 8 HOH A 80 480 71 HOH HOH . J 8 HOH A 81 481 82 HOH HOH . J 8 HOH A 82 482 51 HOH HOH . J 8 HOH A 83 483 150 HOH HOH . J 8 HOH A 84 484 217 HOH HOH . J 8 HOH A 85 485 15 HOH HOH . J 8 HOH A 86 486 36 HOH HOH . J 8 HOH A 87 487 326 HOH HOH . J 8 HOH A 88 488 17 HOH HOH . J 8 HOH A 89 489 409 HOH HOH . J 8 HOH A 90 490 44 HOH HOH . J 8 HOH A 91 491 1 HOH HOH . J 8 HOH A 92 492 23 HOH HOH . J 8 HOH A 93 493 149 HOH HOH . J 8 HOH A 94 494 88 HOH HOH . J 8 HOH A 95 495 69 HOH HOH . J 8 HOH A 96 496 90 HOH HOH . J 8 HOH A 97 497 24 HOH HOH . J 8 HOH A 98 498 116 HOH HOH . J 8 HOH A 99 499 117 HOH HOH . J 8 HOH A 100 500 162 HOH HOH . J 8 HOH A 101 501 130 HOH HOH . J 8 HOH A 102 502 126 HOH HOH . J 8 HOH A 103 503 336 HOH HOH . J 8 HOH A 104 504 18 HOH HOH . J 8 HOH A 105 505 50 HOH HOH . J 8 HOH A 106 506 152 HOH HOH . J 8 HOH A 107 507 89 HOH HOH . J 8 HOH A 108 508 16 HOH HOH . J 8 HOH A 109 509 146 HOH HOH . J 8 HOH A 110 510 25 HOH HOH . J 8 HOH A 111 511 41 HOH HOH . J 8 HOH A 112 512 8 HOH HOH . J 8 HOH A 113 513 185 HOH HOH . J 8 HOH A 114 514 32 HOH HOH . J 8 HOH A 115 515 157 HOH HOH . J 8 HOH A 116 516 47 HOH HOH . J 8 HOH A 117 517 9 HOH HOH . J 8 HOH A 118 518 40 HOH HOH . J 8 HOH A 119 519 46 HOH HOH . J 8 HOH A 120 520 13 HOH HOH . J 8 HOH A 121 521 367 HOH HOH . J 8 HOH A 122 522 124 HOH HOH . J 8 HOH A 123 523 287 HOH HOH . J 8 HOH A 124 524 43 HOH HOH . J 8 HOH A 125 525 62 HOH HOH . J 8 HOH A 126 526 67 HOH HOH . J 8 HOH A 127 527 78 HOH HOH . J 8 HOH A 128 528 164 HOH HOH . J 8 HOH A 129 529 4 HOH HOH . J 8 HOH A 130 530 49 HOH HOH . J 8 HOH A 131 531 100 HOH HOH . J 8 HOH A 132 532 34 HOH HOH . J 8 HOH A 133 533 220 HOH HOH . J 8 HOH A 134 534 257 HOH HOH . J 8 HOH A 135 535 30 HOH HOH . J 8 HOH A 136 536 75 HOH HOH . J 8 HOH A 137 537 2 HOH HOH . J 8 HOH A 138 538 135 HOH HOH . J 8 HOH A 139 539 63 HOH HOH . J 8 HOH A 140 540 60 HOH HOH . J 8 HOH A 141 541 53 HOH HOH . J 8 HOH A 142 542 195 HOH HOH . J 8 HOH A 143 543 33 HOH HOH . J 8 HOH A 144 544 230 HOH HOH . J 8 HOH A 145 545 224 HOH HOH . J 8 HOH A 146 546 39 HOH HOH . J 8 HOH A 147 547 298 HOH HOH . J 8 HOH A 148 548 14 HOH HOH . J 8 HOH A 149 549 159 HOH HOH . J 8 HOH A 150 550 148 HOH HOH . J 8 HOH A 151 551 97 HOH HOH . J 8 HOH A 152 552 189 HOH HOH . J 8 HOH A 153 553 200 HOH HOH . J 8 HOH A 154 554 140 HOH HOH . J 8 HOH A 155 555 61 HOH HOH . J 8 HOH A 156 556 98 HOH HOH . J 8 HOH A 157 557 108 HOH HOH . J 8 HOH A 158 558 59 HOH HOH . J 8 HOH A 159 559 145 HOH HOH . J 8 HOH A 160 560 175 HOH HOH . J 8 HOH A 161 561 288 HOH HOH . J 8 HOH A 162 562 115 HOH HOH . J 8 HOH A 163 563 20 HOH HOH . J 8 HOH A 164 564 87 HOH HOH . J 8 HOH A 165 565 55 HOH HOH . J 8 HOH A 166 566 216 HOH HOH . J 8 HOH A 167 567 38 HOH HOH . J 8 HOH A 168 568 196 HOH HOH . J 8 HOH A 169 569 91 HOH HOH . J 8 HOH A 170 570 239 HOH HOH . J 8 HOH A 171 571 275 HOH HOH . J 8 HOH A 172 572 76 HOH HOH . J 8 HOH A 173 573 337 HOH HOH . J 8 HOH A 174 574 215 HOH HOH . J 8 HOH A 175 575 22 HOH HOH . J 8 HOH A 176 576 109 HOH HOH . J 8 HOH A 177 577 362 HOH HOH . J 8 HOH A 178 578 11 HOH HOH . J 8 HOH A 179 579 179 HOH HOH . J 8 HOH A 180 580 364 HOH HOH . J 8 HOH A 181 581 141 HOH HOH . J 8 HOH A 182 582 121 HOH HOH . J 8 HOH A 183 583 151 HOH HOH . J 8 HOH A 184 584 315 HOH HOH . J 8 HOH A 185 585 236 HOH HOH . J 8 HOH A 186 586 42 HOH HOH . J 8 HOH A 187 587 345 HOH HOH . J 8 HOH A 188 588 375 HOH HOH . J 8 HOH A 189 589 289 HOH HOH . J 8 HOH A 190 590 80 HOH HOH . J 8 HOH A 191 591 324 HOH HOH . J 8 HOH A 192 592 305 HOH HOH . J 8 HOH A 193 593 368 HOH HOH . J 8 HOH A 194 594 356 HOH HOH . J 8 HOH A 195 595 119 HOH HOH . J 8 HOH A 196 596 299 HOH HOH . J 8 HOH A 197 597 182 HOH HOH . J 8 HOH A 198 598 209 HOH HOH . J 8 HOH A 199 599 343 HOH HOH . J 8 HOH A 200 600 231 HOH HOH . J 8 HOH A 201 601 137 HOH HOH . J 8 HOH A 202 602 262 HOH HOH . J 8 HOH A 203 603 192 HOH HOH . J 8 HOH A 204 604 339 HOH HOH . J 8 HOH A 205 605 160 HOH HOH . J 8 HOH A 206 606 183 HOH HOH . J 8 HOH A 207 607 353 HOH HOH . J 8 HOH A 208 608 129 HOH HOH . J 8 HOH A 209 609 223 HOH HOH . J 8 HOH A 210 610 104 HOH HOH . J 8 HOH A 211 611 242 HOH HOH . J 8 HOH A 212 612 172 HOH HOH . J 8 HOH A 213 613 277 HOH HOH . J 8 HOH A 214 614 258 HOH HOH . J 8 HOH A 215 615 102 HOH HOH . J 8 HOH A 216 616 198 HOH HOH . J 8 HOH A 217 617 118 HOH HOH . J 8 HOH A 218 618 358 HOH HOH . J 8 HOH A 219 619 127 HOH HOH . J 8 HOH A 220 620 120 HOH HOH . J 8 HOH A 221 621 35 HOH HOH . J 8 HOH A 222 622 202 HOH HOH . J 8 HOH A 223 623 57 HOH HOH . J 8 HOH A 224 624 125 HOH HOH . J 8 HOH A 225 625 254 HOH HOH . J 8 HOH A 226 626 333 HOH HOH . J 8 HOH A 227 627 136 HOH HOH . J 8 HOH A 228 628 83 HOH HOH . J 8 HOH A 229 629 163 HOH HOH . J 8 HOH A 230 630 212 HOH HOH . J 8 HOH A 231 631 346 HOH HOH . J 8 HOH A 232 632 334 HOH HOH . J 8 HOH A 233 633 227 HOH HOH . J 8 HOH A 234 634 155 HOH HOH . J 8 HOH A 235 635 205 HOH HOH . J 8 HOH A 236 636 193 HOH HOH . J 8 HOH A 237 637 233 HOH HOH . J 8 HOH A 238 638 168 HOH HOH . J 8 HOH A 239 639 229 HOH HOH . J 8 HOH A 240 640 165 HOH HOH . J 8 HOH A 241 641 219 HOH HOH . J 8 HOH A 242 642 338 HOH HOH . J 8 HOH A 243 643 253 HOH HOH . J 8 HOH A 244 644 70 HOH HOH . J 8 HOH A 245 645 92 HOH HOH . J 8 HOH A 246 646 167 HOH HOH . J 8 HOH A 247 647 107 HOH HOH . J 8 HOH A 248 648 84 HOH HOH . J 8 HOH A 249 649 294 HOH HOH . J 8 HOH A 250 650 208 HOH HOH . J 8 HOH A 251 651 308 HOH HOH . J 8 HOH A 252 652 314 HOH HOH . J 8 HOH A 253 653 211 HOH HOH . J 8 HOH A 254 654 122 HOH HOH . J 8 HOH A 255 655 226 HOH HOH . J 8 HOH A 256 656 365 HOH HOH . J 8 HOH A 257 657 319 HOH HOH . J 8 HOH A 258 658 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 PLQ . . . I 7 -1.291 -24.085 -14.483 1 29.11 ? O5 PLQ 308 A 1 HETATM 2 C C5 PLQ . . . I 7 -2.069 -23.581 -15.38 1 25.97 ? C5 PLQ 308 A 1 HETATM 3 C C6 PLQ . . . I 7 -2.263 -24.233 -16.641 1 17.7 ? C6 PLQ 308 A 1 HETATM 4 C C4 PLQ . . . I 7 -2.79 -22.346 -15.157 1 27.99 ? C4 PLQ 308 A 1 HETATM 5 C C3 PLQ . . . I 7 -3.855 -22.023 -15.917 1 32.44 ? C3 PLQ 308 A 1 HETATM 6 C C2 PLQ . . . I 7 -4.123 -22.735 -17.145 1 36.54 ? C2 PLQ 308 A 1 HETATM 7 O O2 PLQ . . . I 7 -5.094 -22.39 -17.924 1 35.29 ? O2 PLQ 308 A 1 HETATM 8 C C1 PLQ . . . I 7 -3.258 -23.853 -17.472 1 34.47 ? C1 PLQ 308 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 509 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #