data_7NOT # _model_server_result.job_id QFk9xNzoVySakCVg9o_EuA _model_server_result.datetime_utc '2024-11-24 20:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7not # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 7NOT # _exptl.entry_id 7NOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.06 _cell.angle_gamma 90 _cell.entry_id 7NOT _cell.length_a 83.4 _cell.length_b 132 _cell.length_c 124.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q,R 1 1 E,F,G,H,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 M N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 264 n n PA O2A NAP sing 265 n n PA O5B NAP sing 266 n n PA O3 NAP sing 267 n n O2A HOA2 NAP sing 268 n n O5B C5B NAP sing 269 n n C5B C4B NAP sing 270 n n C5B H51A NAP sing 271 n n C5B H52A NAP sing 272 n n C4B O4B NAP sing 273 n n C4B C3B NAP sing 274 n n C4B H4B NAP sing 275 n n O4B C1B NAP sing 276 n n C3B O3B NAP sing 277 n n C3B C2B NAP sing 278 n n C3B H3B NAP sing 279 n n O3B HO3A NAP sing 280 n n C2B O2B NAP sing 281 n n C2B C1B NAP sing 282 n n C2B H2B NAP sing 283 n n O2B P2B NAP sing 284 n n C1B N9A NAP sing 285 n n C1B H1B NAP sing 286 n n N9A C8A NAP sing 287 n y N9A C4A NAP sing 288 n y C8A N7A NAP doub 289 n y C8A H8A NAP sing 290 n n N7A C5A NAP sing 291 n y C5A C6A NAP sing 292 n y C5A C4A NAP doub 293 n y C6A N6A NAP sing 294 n n C6A N1A NAP doub 295 n y N6A H61A NAP sing 296 n n N6A H62A NAP sing 297 n n N1A C2A NAP sing 298 n y C2A N3A NAP doub 299 n y C2A H2A NAP sing 300 n n N3A C4A NAP sing 301 n y O3 PN NAP sing 302 n n PN O1N NAP doub 303 n n PN O2N NAP sing 304 n n PN O5D NAP sing 305 n n O5D C5D NAP sing 306 n n C5D C4D NAP sing 307 n n C5D H51N NAP sing 308 n n C5D H52N NAP sing 309 n n C4D O4D NAP sing 310 n n C4D C3D NAP sing 311 n n C4D H4D NAP sing 312 n n O4D C1D NAP sing 313 n n C3D O3D NAP sing 314 n n C3D C2D NAP sing 315 n n C3D H3D NAP sing 316 n n O3D HO3N NAP sing 317 n n C2D O2D NAP sing 318 n n C2D C1D NAP sing 319 n n C2D H2D NAP sing 320 n n O2D HO2N NAP sing 321 n n C1D N1N NAP sing 322 n n C1D H1D NAP sing 323 n n N1N C2N NAP sing 324 n y N1N C6N NAP doub 325 n y C2N C3N NAP doub 326 n y C2N H2N NAP sing 327 n n C3N C7N NAP sing 328 n n C3N C4N NAP sing 329 n y C7N O7N NAP doub 330 n n C7N N7N NAP sing 331 n n N7N H71N NAP sing 332 n n N7N H72N NAP sing 333 n n C4N C5N NAP doub 334 n y C4N H4N NAP sing 335 n n C5N C6N NAP sing 336 n y C5N H5N NAP sing 337 n n C6N H6N NAP sing 338 n n P2B O1X NAP doub 339 n n P2B O2X NAP sing 340 n n P2B O3X NAP sing 341 n n O2X HOP2 NAP sing 342 n n O3X HOP3 NAP sing 343 n n # _atom_sites.entry_id 7NOT _atom_sites.fract_transf_matrix[1][1] 0.01199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MYI A 1 401 401 MYI LIG . J 2 MYI B 1 401 401 MYI LIG . K 3 NAP C 1 401 401 NAP NAP . L 2 MYI C 1 402 501 MYI LIG . M 3 NAP D 1 401 401 NAP NAP . N 2 MYI D 1 402 501 MYI LIG . O 4 HOH A 1 501 103 HOH HOH . O 4 HOH A 2 502 81 HOH HOH . O 4 HOH A 3 503 15 HOH HOH . O 4 HOH A 4 504 4 HOH HOH . O 4 HOH A 5 505 13 HOH HOH . O 4 HOH A 6 506 85 HOH HOH . O 4 HOH A 7 507 133 HOH HOH . O 4 HOH A 8 508 48 HOH HOH . O 4 HOH A 9 509 43 HOH HOH . O 4 HOH A 10 510 132 HOH HOH . O 4 HOH A 11 511 124 HOH HOH . O 4 HOH A 12 512 110 HOH HOH . P 4 HOH B 1 501 108 HOH HOH . P 4 HOH B 2 502 7 HOH HOH . P 4 HOH B 3 503 106 HOH HOH . P 4 HOH B 4 504 86 HOH HOH . P 4 HOH B 5 505 51 HOH HOH . P 4 HOH B 6 506 23 HOH HOH . P 4 HOH B 7 507 63 HOH HOH . P 4 HOH B 8 508 59 HOH HOH . P 4 HOH B 9 509 73 HOH HOH . P 4 HOH B 10 510 16 HOH HOH . P 4 HOH B 11 511 29 HOH HOH . P 4 HOH B 12 512 31 HOH HOH . P 4 HOH B 13 513 88 HOH HOH . Q 4 HOH C 1 501 101 HOH HOH . Q 4 HOH C 2 502 11 HOH HOH . Q 4 HOH C 3 503 47 HOH HOH . Q 4 HOH C 4 504 120 HOH HOH . Q 4 HOH C 5 505 33 HOH HOH . Q 4 HOH C 6 506 49 HOH HOH . Q 4 HOH C 7 507 112 HOH HOH . Q 4 HOH C 8 508 78 HOH HOH . Q 4 HOH C 9 509 39 HOH HOH . Q 4 HOH C 10 510 36 HOH HOH . Q 4 HOH C 11 511 83 HOH HOH . Q 4 HOH C 12 512 72 HOH HOH . Q 4 HOH C 13 513 28 HOH HOH . Q 4 HOH C 14 514 134 HOH HOH . Q 4 HOH C 15 515 109 HOH HOH . R 4 HOH D 1 501 32 HOH HOH . R 4 HOH D 2 502 117 HOH HOH . R 4 HOH D 3 503 38 HOH HOH . R 4 HOH D 4 504 119 HOH HOH . R 4 HOH D 5 505 93 HOH HOH . R 4 HOH D 6 506 107 HOH HOH . R 4 HOH D 7 507 35 HOH HOH . R 4 HOH D 8 508 5 HOH HOH . R 4 HOH D 9 509 121 HOH HOH . R 4 HOH D 10 510 138 HOH HOH . R 4 HOH D 11 511 19 HOH HOH . R 4 HOH D 12 512 113 HOH HOH . R 4 HOH D 13 513 52 HOH HOH . R 4 HOH D 14 514 3 HOH HOH . R 4 HOH D 15 515 84 HOH HOH . R 4 HOH D 16 516 67 HOH HOH . R 4 HOH D 17 517 131 HOH HOH . R 4 HOH D 18 518 100 HOH HOH . R 4 HOH D 19 519 30 HOH HOH . R 4 HOH D 20 520 102 HOH HOH . R 4 HOH D 21 521 61 HOH HOH . R 4 HOH D 22 522 129 HOH HOH . R 4 HOH D 23 523 126 HOH HOH . S 4 HOH E 1 401 14 HOH HOH . S 4 HOH E 2 402 62 HOH HOH . S 4 HOH E 3 403 57 HOH HOH . S 4 HOH E 4 404 92 HOH HOH . S 4 HOH E 5 405 24 HOH HOH . S 4 HOH E 6 406 79 HOH HOH . S 4 HOH E 7 407 76 HOH HOH . S 4 HOH E 8 408 128 HOH HOH . S 4 HOH E 9 409 27 HOH HOH . S 4 HOH E 10 410 22 HOH HOH . S 4 HOH E 11 411 97 HOH HOH . S 4 HOH E 12 412 64 HOH HOH . S 4 HOH E 13 413 41 HOH HOH . S 4 HOH E 14 414 75 HOH HOH . S 4 HOH E 15 415 56 HOH HOH . S 4 HOH E 16 416 99 HOH HOH . T 4 HOH F 1 401 21 HOH HOH . T 4 HOH F 2 402 17 HOH HOH . T 4 HOH F 3 403 98 HOH HOH . T 4 HOH F 4 404 20 HOH HOH . T 4 HOH F 5 405 82 HOH HOH . T 4 HOH F 6 406 54 HOH HOH . T 4 HOH F 7 407 80 HOH HOH . T 4 HOH F 8 408 8 HOH HOH . T 4 HOH F 9 409 1 HOH HOH . T 4 HOH F 10 410 40 HOH HOH . T 4 HOH F 11 411 130 HOH HOH . T 4 HOH F 12 412 50 HOH HOH . T 4 HOH F 13 413 111 HOH HOH . T 4 HOH F 14 414 37 HOH HOH . T 4 HOH F 15 415 77 HOH HOH . T 4 HOH F 16 416 12 HOH HOH . T 4 HOH F 17 417 95 HOH HOH . T 4 HOH F 18 418 34 HOH HOH . T 4 HOH F 19 419 94 HOH HOH . T 4 HOH F 20 420 105 HOH HOH . T 4 HOH F 21 421 65 HOH HOH . T 4 HOH F 22 422 87 HOH HOH . U 4 HOH G 1 401 6 HOH HOH . U 4 HOH G 2 402 66 HOH HOH . U 4 HOH G 3 403 18 HOH HOH . U 4 HOH G 4 404 127 HOH HOH . U 4 HOH G 5 405 26 HOH HOH . U 4 HOH G 6 406 42 HOH HOH . U 4 HOH G 7 407 10 HOH HOH . U 4 HOH G 8 408 25 HOH HOH . U 4 HOH G 9 409 74 HOH HOH . U 4 HOH G 10 410 46 HOH HOH . U 4 HOH G 11 411 55 HOH HOH . U 4 HOH G 12 412 114 HOH HOH . U 4 HOH G 13 413 90 HOH HOH . U 4 HOH G 14 414 53 HOH HOH . U 4 HOH G 15 415 70 HOH HOH . U 4 HOH G 16 416 122 HOH HOH . U 4 HOH G 17 417 91 HOH HOH . U 4 HOH G 18 418 71 HOH HOH . U 4 HOH G 19 419 115 HOH HOH . U 4 HOH G 20 420 69 HOH HOH . U 4 HOH G 21 421 68 HOH HOH . U 4 HOH G 22 422 44 HOH HOH . U 4 HOH G 23 423 89 HOH HOH . U 4 HOH G 24 424 104 HOH HOH . V 4 HOH H 1 401 9 HOH HOH . V 4 HOH H 2 402 60 HOH HOH . V 4 HOH H 3 403 2 HOH HOH . V 4 HOH H 4 404 123 HOH HOH . V 4 HOH H 5 405 96 HOH HOH . V 4 HOH H 6 406 45 HOH HOH . V 4 HOH H 7 407 58 HOH HOH . V 4 HOH H 8 408 116 HOH HOH . V 4 HOH H 9 409 125 HOH HOH . V 4 HOH H 10 410 118 HOH HOH . V 4 HOH H 11 411 136 HOH HOH . V 4 HOH H 12 412 137 HOH HOH . V 4 HOH H 13 413 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . M 3 22.516 1.01 30.995 1 52.38 ? PA NAP 401 D 1 HETATM 2 O O1A NAP . . . M 3 22.058 1.93 32.08 1 53.38 ? O1A NAP 401 D 1 HETATM 3 O O2A NAP . . . M 3 21.912 1.412 29.732 1 48.1 -1 O2A NAP 401 D 1 HETATM 4 O O5B NAP . . . M 3 22.055 -0.571 31.366 1 50.84 ? O5B NAP 401 D 1 HETATM 5 C C5B NAP . . . M 3 21.931 -0.931 32.696 1 56.73 ? C5B NAP 401 D 1 HETATM 6 C C4B NAP . . . M 3 21.067 -2.247 32.808 1 56.22 ? C4B NAP 401 D 1 HETATM 7 O O4B NAP . . . M 3 21.318 -2.851 33.935 1 57.41 ? O4B NAP 401 D 1 HETATM 8 C C3B NAP . . . M 3 19.556 -1.888 32.824 1 56.63 ? C3B NAP 401 D 1 HETATM 9 O O3B NAP . . . M 3 18.852 -2.772 32.063 1 53.36 ? O3B NAP 401 D 1 HETATM 10 C C2B NAP . . . M 3 19.156 -1.999 34.296 1 61.5 ? C2B NAP 401 D 1 HETATM 11 O O2B NAP . . . M 3 17.737 -2.398 34.426 1 58.28 ? O2B NAP 401 D 1 HETATM 12 C C1B NAP . . . M 3 19.937 -2.939 34.773 1 59.26 ? C1B NAP 401 D 1 HETATM 13 N N9A NAP . . . M 3 20.197 -2.698 36.174 1 59.82 ? N9A NAP 401 D 1 HETATM 14 C C8A NAP . . . M 3 20.577 -1.544 36.742 1 59.65 ? C8A NAP 401 D 1 HETATM 15 N N7A NAP . . . M 3 20.709 -1.755 38.059 1 62.83 ? N7A NAP 401 D 1 HETATM 16 C C5A NAP . . . M 3 20.411 -3.034 38.302 1 58.14 ? C5A NAP 401 D 1 HETATM 17 C C6A NAP . . . M 3 20.384 -3.771 39.463 1 62.89 ? C6A NAP 401 D 1 HETATM 18 N N6A NAP . . . M 3 20.622 -3.637 40.895 1 64.41 ? N6A NAP 401 D 1 HETATM 19 N N1A NAP . . . M 3 20.048 -5.047 39.424 1 64.93 ? N1A NAP 401 D 1 HETATM 20 C C2A NAP . . . M 3 19.729 -5.629 38.241 1 56.75 ? C2A NAP 401 D 1 HETATM 21 N N3A NAP . . . M 3 19.755 -4.908 37.101 1 57.71 ? N3A NAP 401 D 1 HETATM 22 C C4A NAP . . . M 3 20.095 -3.617 37.134 1 59.02 ? C4A NAP 401 D 1 HETATM 23 O O3 NAP . . . M 3 24.203 1.087 30.867 1 58.33 ? O3 NAP 401 D 1 HETATM 24 P PN NAP . . . M 3 25.099 0.008 30.031 1 50.29 ? PN NAP 401 D 1 HETATM 25 O O1N NAP . . . M 3 24.188 -0.955 29.324 1 43.67 ? O1N NAP 401 D 1 HETATM 26 O O2N NAP . . . M 3 25.971 0.755 28.99 1 54.25 -1 O2N NAP 401 D 1 HETATM 27 O O5D NAP . . . M 3 26.083 -0.829 31.081 1 53.74 ? O5D NAP 401 D 1 HETATM 28 C C5D NAP . . . M 3 26.04 -2.253 31.065 1 53.7 ? C5D NAP 401 D 1 HETATM 29 C C4D NAP . . . M 3 27.495 -2.83 31.285 1 57.63 ? C4D NAP 401 D 1 HETATM 30 O O4D NAP . . . M 3 28.075 -3.03 30.131 1 62.34 ? O4D NAP 401 D 1 HETATM 31 C C3D NAP . . . M 3 28.351 -1.81 32.035 1 56.43 ? C3D NAP 401 D 1 HETATM 32 O O3D NAP . . . M 3 28.968 -2.409 33.112 1 50.33 ? O3D NAP 401 D 1 HETATM 33 C C2D NAP . . . M 3 29.397 -1.327 31.001 1 53.97 ? C2D NAP 401 D 1 HETATM 34 O O2D NAP . . . M 3 30.702 -1.038 31.671 1 50.14 ? O2D NAP 401 D 1 HETATM 35 C C1D NAP . . . M 3 29.525 -2.317 30.188 1 53.37 ? C1D NAP 401 D 1 HETATM 36 N N1N NAP . . . M 3 29.885 -1.833 28.88 1 55.32 ? N1N NAP 401 D 1 HETATM 37 C C2N NAP . . . M 3 29.075 -0.944 28.234 1 51.92 ? C2N NAP 401 D 1 HETATM 38 C C3N NAP . . . M 3 29.415 -0.484 26.994 1 58.83 ? C3N NAP 401 D 1 HETATM 39 C C7N NAP . . . M 3 28.499 0.518 26.269 1 60.17 ? C7N NAP 401 D 1 HETATM 40 O O7N NAP . . . M 3 28.946 1.218 25.357 1 58.14 ? O7N NAP 401 D 1 HETATM 41 N N7N NAP . . . M 3 27.142 0.636 26.651 1 54.56 ? N7N NAP 401 D 1 HETATM 42 C C4N NAP . . . M 3 30.588 -0.921 26.387 1 58.01 ? C4N NAP 401 D 1 HETATM 43 C C5N NAP . . . M 3 31.392 -1.801 27.025 1 59.07 ? C5N NAP 401 D 1 HETATM 44 C C6N NAP . . . M 3 31.047 -2.267 28.282 1 62.6 ? C6N NAP 401 D 1 HETATM 45 P P2B NAP . . . M 3 16.649 -1.255 34.92 1 55.91 ? P2B NAP 401 D 1 HETATM 46 O O1X NAP . . . M 3 17.35 -0.224 35.746 1 53.5 ? O1X NAP 401 D 1 HETATM 47 O O2X NAP . . . M 3 15.575 -1.905 35.741 1 50.21 -1 O2X NAP 401 D 1 HETATM 48 O O3X NAP . . . M 3 16.042 -0.609 33.732 1 59.85 -1 O3X NAP 401 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #