data_7NPI
#
_model_server_result.job_id            82_vN-88-0xRN4KEoPYZQA 
_model_server_result.datetime_utc      '2024-12-26 10:40:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7npi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":601}' 
#
_entry.id    7NPI 
#
_exptl.entry_id    7NPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.14 
_cell.angle_gamma         90 
_cell.entry_id            7NPI 
_cell.length_a            162.061 
_cell.length_b            203.071 
_cell.length_c            265.035 
_cell.Z_PDB               140 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
? hexameric 6 author_defined_assembly 3 
? hexameric 6 author_defined_assembly 4 
? hexameric 6 author_defined_assembly 5 
? hexameric 6 author_defined_assembly 6 
? hexameric 6 author_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,QA,RA,SA,UA,VA 1 1 
G,H,I,J,K,L,WA 2 1 
M,N,O,P,Q,R,XA 3 1 
S,T,U,V,W,X,TA,YA 4 1 
Y,Z,AA,BA,CA,DA,ZA,AB 5 1 
EA,FA,GA,HA,IA,JA,BB 6 1 
KA,LA,MA,NA,OA,PA,CB 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 SA N N 
? 4 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 222 A THR 453 1_555 SA NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? 
metalc ? metalc2 S OG1 THR 222 S THR 453 1_555 TA NA NA . S NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7NPI 
_atom_sites.fract_transf_matrix[1][1]    0.006171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001903 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004924 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
QA 3 CL A 1 601 1 CL CL . 
RA 3 CL A 1 602 2 CL CL . 
SA 4 NA A 1 603 1 NA NA . 
TA 4 NA S 1 601 2 NA NA . 
UA 5 HOH A 1 701 13 HOH HOH . 
UA 5 HOH A 2 702 19 HOH HOH . 
UA 5 HOH A 3 703 18 HOH HOH . 
UA 5 HOH A 4 704 20 HOH HOH . 
VA 5 HOH E 1 101 15 HOH HOH . 
WA 5 HOH G 1 601 12 HOH HOH . 
WA 5 HOH G 2 602 4 HOH HOH . 
WA 5 HOH G 3 603 9 HOH HOH . 
XA 5 HOH M 1 601 21 HOH HOH . 
XA 5 HOH M 2 602 10 HOH HOH . 
YA 5 HOH T 1 101 17 HOH HOH . 
YA 5 HOH T 2 102 22 HOH HOH . 
ZA 5 HOH Y 1 601 8 HOH HOH . 
AB 5 HOH Z 1 101 3 HOH HOH . 
BB 5 HOH e 1 601 16 HOH HOH . 
CB 5 HOH m 1 101 14 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         TA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -162.635 
_atom_site.Cartn_y               60.742 
_atom_site.Cartn_z               87.502 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.54 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          S 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              97 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#