data_7NPK # _model_server_result.job_id KyVN_BTGPp6ebZ5ek1YYCA _model_server_result.datetime_utc '2024-10-18 06:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7npk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7NPK # _exptl.entry_id 7NPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.4 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-((1S,2R)-1-hydroxy-1-(o-tolyl)pentan-2-yl)-2-oxo-2,3-dihydrobenzo[d]oxazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.97 _cell.angle_gamma 90 _cell.entry_id 7NPK _cell.length_a 113.79 _cell.length_b 39.62 _cell.length_c 90.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N2 O4' _chem_comp.formula_weight 354.4 _chem_comp.id UL2 _chem_comp.mon_nstd_flag . _chem_comp.name N-((1S,2R)-1-hydroxy-1-(o-tolyl)pentan-2-yl)-2-oxo-2,3-dihydrobenzo[d]oxazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}-[(1~{S},2~{R})-1-(2-methylphenyl)-1-oxidanyl-pentan-2-yl]-2-oxidanylidene-3~{H}-1,3-benzoxazole-5-carboxamide;N-[(1S,2R)-1-(2-methylphenyl)-1-oxidanyl-pentan-2-yl]-2-oxidanylidene-3H-1,3-benzoxazole-5-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C24 UL2 doub 371 n n C24 O23 UL2 sing 372 n n C24 N26 UL2 sing 373 n n O23 C22 UL2 sing 374 n n N26 C28 UL2 sing 375 n n C22 C20 UL2 doub 376 n y C22 C28 UL2 sing 377 n y C20 C18 UL2 sing 378 n y C28 C29 UL2 doub 379 n y C18 C17 UL2 doub 380 n y C29 C17 UL2 sing 381 n y C17 C15 UL2 sing 382 n n C15 N13 UL2 sing 383 n n C15 O16 UL2 doub 384 n n N13 C11 UL2 sing 385 n n O33 C31 UL2 sing 386 n n C11 C31 UL2 sing 387 n n C11 C08 UL2 sing 388 n n C31 C35 UL2 sing 389 n n C05 C08 UL2 sing 390 n n C05 C01 UL2 sing 391 n n C35 C36 UL2 doub 392 n y C35 C44 UL2 sing 393 n y C36 C38 UL2 sing 394 n y C45 C44 UL2 sing 395 n n C44 C42 UL2 doub 396 n y C38 C40 UL2 doub 397 n y C42 C40 UL2 sing 398 n y C20 H1 UL2 sing 399 n n C01 H2 UL2 sing 400 n n C01 H3 UL2 sing 401 n n C01 H4 UL2 sing 402 n n C05 H5 UL2 sing 403 n n C05 H6 UL2 sing 404 n n C08 H7 UL2 sing 405 n n C08 H8 UL2 sing 406 n n C11 H9 UL2 sing 407 n n N13 H10 UL2 sing 408 n n C18 H11 UL2 sing 409 n n N26 H12 UL2 sing 410 n n C29 H13 UL2 sing 411 n n C31 H14 UL2 sing 412 n n O33 H15 UL2 sing 413 n n C36 H16 UL2 sing 414 n n C38 H17 UL2 sing 415 n n C40 H18 UL2 sing 416 n n C42 H19 UL2 sing 417 n n C45 H20 UL2 sing 418 n n C45 H21 UL2 sing 419 n n C45 H22 UL2 sing 420 n n # _atom_sites.entry_id 7NPK _atom_sites.fract_transf_matrix[1][1] 0.008788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00235 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 1 GOL GOL . D 3 UL2 A 1 403 1 UL2 LIG . E 4 HOH A 1 501 127 HOH HOH . E 4 HOH A 2 502 126 HOH HOH . E 4 HOH A 3 503 88 HOH HOH . E 4 HOH A 4 504 63 HOH HOH . E 4 HOH A 5 505 122 HOH HOH . E 4 HOH A 6 506 37 HOH HOH . E 4 HOH A 7 507 28 HOH HOH . E 4 HOH A 8 508 116 HOH HOH . E 4 HOH A 9 509 38 HOH HOH . E 4 HOH A 10 510 119 HOH HOH . E 4 HOH A 11 511 18 HOH HOH . E 4 HOH A 12 512 40 HOH HOH . E 4 HOH A 13 513 125 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 23 HOH HOH . E 4 HOH A 16 516 115 HOH HOH . E 4 HOH A 17 517 29 HOH HOH . E 4 HOH A 18 518 75 HOH HOH . E 4 HOH A 19 519 30 HOH HOH . E 4 HOH A 20 520 77 HOH HOH . E 4 HOH A 21 521 10 HOH HOH . E 4 HOH A 22 522 43 HOH HOH . E 4 HOH A 23 523 69 HOH HOH . E 4 HOH A 24 524 25 HOH HOH . E 4 HOH A 25 525 3 HOH HOH . E 4 HOH A 26 526 13 HOH HOH . E 4 HOH A 27 527 70 HOH HOH . E 4 HOH A 28 528 9 HOH HOH . E 4 HOH A 29 529 90 HOH HOH . E 4 HOH A 30 530 6 HOH HOH . E 4 HOH A 31 531 85 HOH HOH . E 4 HOH A 32 532 5 HOH HOH . E 4 HOH A 33 533 19 HOH HOH . E 4 HOH A 34 534 32 HOH HOH . E 4 HOH A 35 535 24 HOH HOH . E 4 HOH A 36 536 130 HOH HOH . E 4 HOH A 37 537 113 HOH HOH . E 4 HOH A 38 538 22 HOH HOH . E 4 HOH A 39 539 84 HOH HOH . E 4 HOH A 40 540 107 HOH HOH . E 4 HOH A 41 541 45 HOH HOH . E 4 HOH A 42 542 76 HOH HOH . E 4 HOH A 43 543 60 HOH HOH . E 4 HOH A 44 544 62 HOH HOH . E 4 HOH A 45 545 117 HOH HOH . E 4 HOH A 46 546 99 HOH HOH . E 4 HOH A 47 547 11 HOH HOH . E 4 HOH A 48 548 2 HOH HOH . E 4 HOH A 49 549 82 HOH HOH . E 4 HOH A 50 550 31 HOH HOH . E 4 HOH A 51 551 120 HOH HOH . E 4 HOH A 52 552 16 HOH HOH . E 4 HOH A 53 553 105 HOH HOH . E 4 HOH A 54 554 98 HOH HOH . E 4 HOH A 55 555 93 HOH HOH . E 4 HOH A 56 556 114 HOH HOH . E 4 HOH A 57 557 94 HOH HOH . E 4 HOH A 58 558 121 HOH HOH . E 4 HOH A 59 559 21 HOH HOH . E 4 HOH A 60 560 97 HOH HOH . E 4 HOH A 61 561 106 HOH HOH . E 4 HOH A 62 562 72 HOH HOH . E 4 HOH A 63 563 81 HOH HOH . E 4 HOH A 64 564 67 HOH HOH . E 4 HOH A 65 565 26 HOH HOH . E 4 HOH A 66 566 118 HOH HOH . E 4 HOH A 67 567 8 HOH HOH . E 4 HOH A 68 568 65 HOH HOH . E 4 HOH A 69 569 39 HOH HOH . E 4 HOH A 70 570 64 HOH HOH . E 4 HOH A 71 571 36 HOH HOH . E 4 HOH A 72 572 59 HOH HOH . E 4 HOH A 73 573 20 HOH HOH . E 4 HOH A 74 574 73 HOH HOH . E 4 HOH A 75 575 80 HOH HOH . E 4 HOH A 76 576 12 HOH HOH . E 4 HOH A 77 577 42 HOH HOH . E 4 HOH A 78 578 108 HOH HOH . E 4 HOH A 79 579 83 HOH HOH . E 4 HOH A 80 580 101 HOH HOH . E 4 HOH A 81 581 86 HOH HOH . E 4 HOH A 82 582 1 HOH HOH . E 4 HOH A 83 583 15 HOH HOH . E 4 HOH A 84 584 34 HOH HOH . E 4 HOH A 85 585 49 HOH HOH . E 4 HOH A 86 586 48 HOH HOH . E 4 HOH A 87 587 79 HOH HOH . E 4 HOH A 88 588 87 HOH HOH . E 4 HOH A 89 589 57 HOH HOH . E 4 HOH A 90 590 17 HOH HOH . E 4 HOH A 91 591 33 HOH HOH . E 4 HOH A 92 592 89 HOH HOH . E 4 HOH A 93 593 103 HOH HOH . E 4 HOH A 94 594 78 HOH HOH . E 4 HOH A 95 595 54 HOH HOH . E 4 HOH A 96 596 95 HOH HOH . E 4 HOH A 97 597 61 HOH HOH . E 4 HOH A 98 598 92 HOH HOH . E 4 HOH A 99 599 68 HOH HOH . E 4 HOH A 100 600 58 HOH HOH . E 4 HOH A 101 601 7 HOH HOH . E 4 HOH A 102 602 55 HOH HOH . E 4 HOH A 103 603 96 HOH HOH . E 4 HOH A 104 604 27 HOH HOH . E 4 HOH A 105 605 102 HOH HOH . E 4 HOH A 106 606 44 HOH HOH . E 4 HOH A 107 607 66 HOH HOH . E 4 HOH A 108 608 53 HOH HOH . E 4 HOH A 109 609 41 HOH HOH . E 4 HOH A 110 610 46 HOH HOH . E 4 HOH A 111 611 111 HOH HOH . E 4 HOH A 112 612 47 HOH HOH . E 4 HOH A 113 613 4 HOH HOH . E 4 HOH A 114 614 112 HOH HOH . E 4 HOH A 115 615 35 HOH HOH . E 4 HOH A 116 616 51 HOH HOH . E 4 HOH A 117 617 91 HOH HOH . E 4 HOH A 118 618 128 HOH HOH . E 4 HOH A 119 619 123 HOH HOH . E 4 HOH A 120 620 110 HOH HOH . E 4 HOH A 121 621 124 HOH HOH . E 4 HOH A 122 622 104 HOH HOH . E 4 HOH A 123 623 71 HOH HOH . E 4 HOH A 124 624 50 HOH HOH . E 4 HOH A 125 625 52 HOH HOH . E 4 HOH A 126 626 100 HOH HOH . E 4 HOH A 127 627 56 HOH HOH . E 4 HOH A 128 628 109 HOH HOH . E 4 HOH A 129 629 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 UL2 . . . D 3 -18.436 22.326 7.345 1 37.26 ? C15 UL2 403 A 1 HETATM 2 C C17 UL2 . . . D 3 -18.286 22.593 5.873 1 39.38 ? C17 UL2 403 A 1 HETATM 3 C C20 UL2 . . . D 3 -17.397 22.048 3.686 1 42.01 ? C20 UL2 403 A 1 HETATM 4 C C22 UL2 . . . D 3 -18.146 23.105 3.18 1 43.93 ? C22 UL2 403 A 1 HETATM 5 C C24 UL2 . . . D 3 -19.072 24.608 1.861 1 47.43 ? C24 UL2 403 A 1 HETATM 6 C C28 UL2 . . . D 3 -18.934 23.868 3.953 1 44.03 ? C28 UL2 403 A 1 HETATM 7 C C01 UL2 . . . D 3 -14.701 19.219 9.9 1 33.45 ? C01 UL2 403 A 1 HETATM 8 C C05 UL2 . . . D 3 -15.746 20.207 9.454 1 33.58 ? C05 UL2 403 A 1 HETATM 9 C C08 UL2 . . . D 3 -17.177 19.615 9.476 1 33.35 ? C08 UL2 403 A 1 HETATM 10 C C11 UL2 . . . D 3 -18.27 20.602 9.113 1 34 ? C11 UL2 403 A 1 HETATM 11 N N13 UL2 . . . D 3 -18.101 21.095 7.79 1 34.95 ? N13 UL2 403 A 1 HETATM 12 O O16 UL2 . . . D 3 -18.881 23.197 8.084 1 37.79 ? O16 UL2 403 A 1 HETATM 13 C C18 UL2 . . . D 3 -17.467 21.815 5.049 1 40.38 ? C18 UL2 403 A 1 HETATM 14 O O23 UL2 . . . D 3 -18.214 23.522 1.871 1 46.28 ? O23 UL2 403 A 1 HETATM 15 O O25 UL2 . . . D 3 -19.363 25.214 0.834 1 48.91 ? O25 UL2 403 A 1 HETATM 16 N N26 UL2 . . . D 3 -19.516 24.817 3.115 1 46.42 ? N26 UL2 403 A 1 HETATM 17 C C29 UL2 . . . D 3 -19.038 23.627 5.319 1 41.5 ? C29 UL2 403 A 1 HETATM 18 C C31 UL2 . . . D 3 -19.706 20.218 9.391 1 33.28 ? C31 UL2 403 A 1 HETATM 19 O O33 UL2 . . . D 3 -19.995 19.139 8.502 1 34.22 ? O33 UL2 403 A 1 HETATM 20 C C35 UL2 . . . D 3 -19.989 19.818 10.833 1 31.58 ? C35 UL2 403 A 1 HETATM 21 C C36 UL2 . . . D 3 -19.702 18.531 11.293 1 30.94 ? C36 UL2 403 A 1 HETATM 22 C C38 UL2 . . . D 3 -19.955 18.175 12.602 1 30.37 ? C38 UL2 403 A 1 HETATM 23 C C40 UL2 . . . D 3 -20.452 19.099 13.478 1 30.33 ? C40 UL2 403 A 1 HETATM 24 C C42 UL2 . . . D 3 -20.747 20.377 13.047 1 31.04 ? C42 UL2 403 A 1 HETATM 25 C C44 UL2 . . . D 3 -20.498 20.775 11.735 1 31.5 ? C44 UL2 403 A 1 HETATM 26 C C45 UL2 . . . D 3 -20.806 22.183 11.318 1 31.61 ? C45 UL2 403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #