data_7NPL # _model_server_result.job_id 7ZkqgOV0dnHkk1n1rq8Z5g _model_server_result.datetime_utc '2024-10-18 06:15:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7npl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7NPL # _exptl.entry_id 7NPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.872 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-((1S,2R)-1-(3-chloro-2-methylphenyl)-1-hydroxypentan-2-yl)-2-oxoindoline-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.38 _cell.angle_gamma 90 _cell.entry_id 7NPL _cell.length_a 114.12 _cell.length_b 39.2 _cell.length_c 90.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 Cl N2 O3' _chem_comp.formula_weight 386.872 _chem_comp.id UKZ _chem_comp.mon_nstd_flag . _chem_comp.name N-((1S,2R)-1-(3-chloro-2-methylphenyl)-1-hydroxypentan-2-yl)-2-oxoindoline-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}-[(1~{S},2~{R})-1-(3-chloranyl-2-methyl-phenyl)-1-oxidanyl-pentan-2-yl]-2-oxidanylidene-1,3-dihydroindole-4-carboxamide;N-[(1S,2R)-1-(3-chloranyl-2-methyl-phenyl)-1-oxidanyl-pentan-2-yl]-2-oxidanylidene-1,3-dihydroindole-4-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C08 UKZ doub 371 n y C09 C10 UKZ sing 372 n y N02 C10 UKZ sing 373 n n N02 C11 UKZ sing 374 n n C08 C07 UKZ sing 375 n y C10 C13 UKZ doub 376 n y C11 O02 UKZ doub 377 n n C11 C12 UKZ sing 378 n n C07 C06 UKZ doub 379 n y C13 C06 UKZ sing 380 n y C13 C12 UKZ sing 381 n n C06 C05 UKZ sing 382 n n C05 N01 UKZ sing 383 n n C05 O01 UKZ doub 384 n n N01 C04 UKZ sing 385 n n O03 C14 UKZ sing 386 n n C04 C14 UKZ sing 387 n n C04 C03 UKZ sing 388 n n C14 C15 UKZ sing 389 n n C02 C03 UKZ sing 390 n n C02 C01 UKZ sing 391 n n C15 C16 UKZ doub 392 n y C15 C20 UKZ sing 393 n y C16 C17 UKZ sing 394 n y C21 C20 UKZ sing 395 n n C20 C19 UKZ doub 396 n y C17 C18 UKZ doub 397 n y C19 C18 UKZ sing 398 n y C19 CL UKZ sing 399 n n C17 H1 UKZ sing 400 n n C21 H2 UKZ sing 401 n n C21 H3 UKZ sing 402 n n C21 H4 UKZ sing 403 n n C01 H5 UKZ sing 404 n n C01 H6 UKZ sing 405 n n C01 H7 UKZ sing 406 n n C02 H8 UKZ sing 407 n n C02 H9 UKZ sing 408 n n C03 H10 UKZ sing 409 n n C03 H11 UKZ sing 410 n n C04 H12 UKZ sing 411 n n N01 H13 UKZ sing 412 n n C07 H14 UKZ sing 413 n n C08 H15 UKZ sing 414 n n C09 H16 UKZ sing 415 n n N02 H17 UKZ sing 416 n n C12 H18 UKZ sing 417 n n C12 H19 UKZ sing 418 n n C14 H20 UKZ sing 419 n n O03 H21 UKZ sing 420 n n C16 H22 UKZ sing 421 n n C18 H23 UKZ sing 422 n n # _atom_sites.entry_id 7NPL _atom_sites.fract_transf_matrix[1][1] 0.008763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00241 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UKZ A 1 401 1 UKZ LIG . C 3 GOL A 1 402 2 GOL GOL . D 4 HOH A 1 501 67 HOH HOH . D 4 HOH A 2 502 48 HOH HOH . D 4 HOH A 3 503 71 HOH HOH . D 4 HOH A 4 504 64 HOH HOH . D 4 HOH A 5 505 9 HOH HOH . D 4 HOH A 6 506 49 HOH HOH . D 4 HOH A 7 507 56 HOH HOH . D 4 HOH A 8 508 55 HOH HOH . D 4 HOH A 9 509 14 HOH HOH . D 4 HOH A 10 510 63 HOH HOH . D 4 HOH A 11 511 5 HOH HOH . D 4 HOH A 12 512 17 HOH HOH . D 4 HOH A 13 513 57 HOH HOH . D 4 HOH A 14 514 18 HOH HOH . D 4 HOH A 15 515 60 HOH HOH . D 4 HOH A 16 516 72 HOH HOH . D 4 HOH A 17 517 46 HOH HOH . D 4 HOH A 18 518 61 HOH HOH . D 4 HOH A 19 519 7 HOH HOH . D 4 HOH A 20 520 58 HOH HOH . D 4 HOH A 21 521 69 HOH HOH . D 4 HOH A 22 522 3 HOH HOH . D 4 HOH A 23 523 8 HOH HOH . D 4 HOH A 24 524 38 HOH HOH . D 4 HOH A 25 525 33 HOH HOH . D 4 HOH A 26 526 59 HOH HOH . D 4 HOH A 27 527 2 HOH HOH . D 4 HOH A 28 528 16 HOH HOH . D 4 HOH A 29 529 6 HOH HOH . D 4 HOH A 30 530 26 HOH HOH . D 4 HOH A 31 531 10 HOH HOH . D 4 HOH A 32 532 28 HOH HOH . D 4 HOH A 33 533 12 HOH HOH . D 4 HOH A 34 534 23 HOH HOH . D 4 HOH A 35 535 22 HOH HOH . D 4 HOH A 36 536 40 HOH HOH . D 4 HOH A 37 537 32 HOH HOH . D 4 HOH A 38 538 68 HOH HOH . D 4 HOH A 39 539 53 HOH HOH . D 4 HOH A 40 540 78 HOH HOH . D 4 HOH A 41 541 51 HOH HOH . D 4 HOH A 42 542 41 HOH HOH . D 4 HOH A 43 543 80 HOH HOH . D 4 HOH A 44 544 20 HOH HOH . D 4 HOH A 45 545 76 HOH HOH . D 4 HOH A 46 546 79 HOH HOH . D 4 HOH A 47 547 31 HOH HOH . D 4 HOH A 48 548 19 HOH HOH . D 4 HOH A 49 549 81 HOH HOH . D 4 HOH A 50 550 1 HOH HOH . D 4 HOH A 51 551 35 HOH HOH . D 4 HOH A 52 552 29 HOH HOH . D 4 HOH A 53 553 36 HOH HOH . D 4 HOH A 54 554 77 HOH HOH . D 4 HOH A 55 555 24 HOH HOH . D 4 HOH A 56 556 4 HOH HOH . D 4 HOH A 57 557 62 HOH HOH . D 4 HOH A 58 558 70 HOH HOH . D 4 HOH A 59 559 39 HOH HOH . D 4 HOH A 60 560 27 HOH HOH . D 4 HOH A 61 561 13 HOH HOH . D 4 HOH A 62 562 34 HOH HOH . D 4 HOH A 63 563 65 HOH HOH . D 4 HOH A 64 564 30 HOH HOH . D 4 HOH A 65 565 15 HOH HOH . D 4 HOH A 66 566 11 HOH HOH . D 4 HOH A 67 567 54 HOH HOH . D 4 HOH A 68 568 50 HOH HOH . D 4 HOH A 69 569 21 HOH HOH . D 4 HOH A 70 570 37 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 42 HOH HOH . D 4 HOH A 73 573 47 HOH HOH . D 4 HOH A 74 574 25 HOH HOH . D 4 HOH A 75 575 66 HOH HOH . D 4 HOH A 76 576 45 HOH HOH . D 4 HOH A 77 577 73 HOH HOH . D 4 HOH A 78 578 43 HOH HOH . D 4 HOH A 79 579 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UKZ . . . B 2 -18.778 4.121 3.839 1 37.65 ? C10 UKZ 401 A 1 HETATM 2 C C13 UKZ . . . B 2 -18.83 3.907 5.221 1 37.18 ? C13 UKZ 401 A 1 HETATM 3 C C15 UKZ . . . B 2 -19.697 -0.142 10.687 1 37.18 ? C15 UKZ 401 A 1 HETATM 4 C C17 UKZ . . . B 2 -19.656 -1.916 12.362 1 38.32 ? C17 UKZ 401 A 1 HETATM 5 C C20 UKZ . . . B 2 -20.088 0.799 11.676 1 37.48 ? C20 UKZ 401 A 1 HETATM 6 C C21 UKZ . . . B 2 -20.326 2.267 11.349 1 36.83 ? C21 UKZ 401 A 1 HETATM 7 C C01 UKZ . . . B 2 -14.442 -0.398 9.868 1 33.54 ? C01 UKZ 401 A 1 HETATM 8 C C02 UKZ . . . B 2 -15.523 0.521 9.311 1 34.13 ? C02 UKZ 401 A 1 HETATM 9 C C03 UKZ . . . B 2 -16.913 -0.13 9.417 1 34.32 ? C03 UKZ 401 A 1 HETATM 10 C C04 UKZ . . . B 2 -18.029 0.841 9.027 1 35.05 ? C04 UKZ 401 A 1 HETATM 11 N N01 UKZ . . . B 2 -17.911 1.225 7.595 1 35.09 ? N01 UKZ 401 A 1 HETATM 12 C C05 UKZ . . . B 2 -18.197 2.472 7.199 1 36.48 ? C05 UKZ 401 A 1 HETATM 13 O O01 UKZ . . . B 2 -18.537 3.347 7.999 1 37.51 ? O01 UKZ 401 A 1 HETATM 14 C C06 UKZ . . . B 2 -18.111 2.814 5.756 1 37.08 ? C06 UKZ 401 A 1 HETATM 15 C C07 UKZ . . . B 2 -17.332 1.989 4.928 1 37.19 ? C07 UKZ 401 A 1 HETATM 16 C C08 UKZ . . . B 2 -17.321 2.205 3.544 1 37.73 ? C08 UKZ 401 A 1 HETATM 17 C C09 UKZ . . . B 2 -18.016 3.3 3.011 1 37.49 ? C09 UKZ 401 A 1 HETATM 18 N N02 UKZ . . . B 2 -19.474 5.305 3.533 1 38.69 ? N02 UKZ 401 A 1 HETATM 19 C C11 UKZ . . . B 2 -20.017 5.852 4.613 1 39.58 ? C11 UKZ 401 A 1 HETATM 20 O O02 UKZ . . . B 2 -20.676 6.89 4.633 1 41 ? O02 UKZ 401 A 1 HETATM 21 C C12 UKZ . . . B 2 -19.634 5.023 5.819 1 38.46 ? C12 UKZ 401 A 1 HETATM 22 C C14 UKZ . . . B 2 -19.451 0.29 9.229 1 36.21 ? C14 UKZ 401 A 1 HETATM 23 O O03 UKZ . . . B 2 -19.654 -0.816 8.342 1 35.41 ? O03 UKZ 401 A 1 HETATM 24 C C16 UKZ . . . B 2 -19.473 -1.484 11.043 1 37.8 ? C16 UKZ 401 A 1 HETATM 25 C C18 UKZ . . . B 2 -20.056 -0.995 13.322 1 38.44 ? C18 UKZ 401 A 1 HETATM 26 C C19 UKZ . . . B 2 -20.189 0.35 12.994 1 39.18 ? C19 UKZ 401 A 1 HETATM 27 CL CL UKZ . . . B 2 -20.674 1.49 14.212 1 41.68 ? CL UKZ 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #