data_7NPM
#
_model_server_result.job_id            Erwl0D-FOp2i6Hrzhy5SvA 
_model_server_result.datetime_utc      '2025-09-08 22:52:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7npm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7NPM 
#
_exptl.entry_id    7NPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PLATINUM (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NPM 
_cell.length_a            37.72 
_cell.length_b            85.89 
_cell.length_c            33.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 AAA CYS 26 1_555 A SG CYS 80 AAA CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
disulf ? disulf2 A SG CYS 38 AAA CYS 39 1_555 A SG CYS 91 AAA CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 A SG CYS 56 AAA CYS 57 1_555 A SG CYS 106 AAA CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc1 A NE2 HIS 7 AAA HIS 8 1_555 B PT PT . AAA PT 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 A NE2 GLN 11 AAA GLN 12 1_555 B PT PT . AAA PT 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc3 A ND1 HIS 83 AAA HIS 84 1_555 C PT PT . AAA PT 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.839 ? 
metalc ? metalc4 A NE2 HIS 83 AAA HIS 84 1_555 D PT PT . AAA PT 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc5 A NH2 ARG 94 AAA ARG 95 1_555 C PT PT . AAA PT 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'Pt 2' 
_chem_comp.formula_weight    195.078 
_chem_comp.id                PT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PLATINUM (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7NPM 
_atom_sites.fract_transf_matrix[1][1]    0.026511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PT AAA 1 201 1 PT PT . 
C 2 PT AAA 1 202 2 PT PT . 
D 2 PT AAA 1 203 3 PT PT . 
E 3 TAR AAA 1 204 1 TAR TAR . 
F 4 HOH AAA 1 301 89 HOH HOH . 
F 4 HOH AAA 2 302 70 HOH HOH . 
F 4 HOH AAA 3 303 95 HOH HOH . 
F 4 HOH AAA 4 304 18 HOH HOH . 
F 4 HOH AAA 5 305 62 HOH HOH . 
F 4 HOH AAA 6 306 49 HOH HOH . 
F 4 HOH AAA 7 307 56 HOH HOH . 
F 4 HOH AAA 8 308 60 HOH HOH . 
F 4 HOH AAA 9 309 57 HOH HOH . 
F 4 HOH AAA 10 310 37 HOH HOH . 
F 4 HOH AAA 11 311 4 HOH HOH . 
F 4 HOH AAA 12 312 6 HOH HOH . 
F 4 HOH AAA 13 313 10 HOH HOH . 
F 4 HOH AAA 14 314 54 HOH HOH . 
F 4 HOH AAA 15 315 23 HOH HOH . 
F 4 HOH AAA 16 316 35 HOH HOH . 
F 4 HOH AAA 17 317 74 HOH HOH . 
F 4 HOH AAA 18 318 77 HOH HOH . 
F 4 HOH AAA 19 319 36 HOH HOH . 
F 4 HOH AAA 20 320 42 HOH HOH . 
F 4 HOH AAA 21 321 11 HOH HOH . 
F 4 HOH AAA 22 322 69 HOH HOH . 
F 4 HOH AAA 23 323 86 HOH HOH . 
F 4 HOH AAA 24 324 65 HOH HOH . 
F 4 HOH AAA 25 325 21 HOH HOH . 
F 4 HOH AAA 26 326 12 HOH HOH . 
F 4 HOH AAA 27 327 26 HOH HOH . 
F 4 HOH AAA 28 328 33 HOH HOH . 
F 4 HOH AAA 29 329 53 HOH HOH . 
F 4 HOH AAA 30 330 58 HOH HOH . 
F 4 HOH AAA 31 331 25 HOH HOH . 
F 4 HOH AAA 32 332 27 HOH HOH . 
F 4 HOH AAA 33 333 8 HOH HOH . 
F 4 HOH AAA 34 334 45 HOH HOH . 
F 4 HOH AAA 35 335 9 HOH HOH . 
F 4 HOH AAA 36 336 15 HOH HOH . 
F 4 HOH AAA 37 337 48 HOH HOH . 
F 4 HOH AAA 38 338 40 HOH HOH . 
F 4 HOH AAA 39 339 66 HOH HOH . 
F 4 HOH AAA 40 340 43 HOH HOH . 
F 4 HOH AAA 41 341 34 HOH HOH . 
F 4 HOH AAA 42 342 1 HOH HOH . 
F 4 HOH AAA 43 343 30 HOH HOH . 
F 4 HOH AAA 44 344 17 HOH HOH . 
F 4 HOH AAA 45 345 7 HOH HOH . 
F 4 HOH AAA 46 346 13 HOH HOH . 
F 4 HOH AAA 47 347 20 HOH HOH . 
F 4 HOH AAA 48 348 63 HOH HOH . 
F 4 HOH AAA 49 349 38 HOH HOH . 
F 4 HOH AAA 50 350 73 HOH HOH . 
F 4 HOH AAA 51 351 16 HOH HOH . 
F 4 HOH AAA 52 352 85 HOH HOH . 
F 4 HOH AAA 53 353 3 HOH HOH . 
F 4 HOH AAA 54 354 39 HOH HOH . 
F 4 HOH AAA 55 355 82 HOH HOH . 
F 4 HOH AAA 56 356 80 HOH HOH . 
F 4 HOH AAA 57 357 14 HOH HOH . 
F 4 HOH AAA 58 358 46 HOH HOH . 
F 4 HOH AAA 59 359 2 HOH HOH . 
F 4 HOH AAA 60 360 44 HOH HOH . 
F 4 HOH AAA 61 361 19 HOH HOH . 
F 4 HOH AAA 62 362 59 HOH HOH . 
F 4 HOH AAA 63 363 68 HOH HOH . 
F 4 HOH AAA 64 364 88 HOH HOH . 
F 4 HOH AAA 65 365 24 HOH HOH . 
F 4 HOH AAA 66 366 55 HOH HOH . 
F 4 HOH AAA 67 367 41 HOH HOH . 
F 4 HOH AAA 68 368 94 HOH HOH . 
F 4 HOH AAA 69 369 81 HOH HOH . 
F 4 HOH AAA 70 370 61 HOH HOH . 
F 4 HOH AAA 71 371 83 HOH HOH . 
F 4 HOH AAA 72 372 75 HOH HOH . 
F 4 HOH AAA 73 373 50 HOH HOH . 
F 4 HOH AAA 74 374 67 HOH HOH . 
F 4 HOH AAA 75 375 29 HOH HOH . 
F 4 HOH AAA 76 376 71 HOH HOH . 
F 4 HOH AAA 77 377 87 HOH HOH . 
F 4 HOH AAA 78 378 79 HOH HOH . 
F 4 HOH AAA 79 379 51 HOH HOH . 
F 4 HOH AAA 80 380 72 HOH HOH . 
F 4 HOH AAA 81 381 93 HOH HOH . 
F 4 HOH AAA 82 382 78 HOH HOH . 
F 4 HOH AAA 83 383 84 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PT 
_atom_site.label_atom_id         PT 
_atom_site.label_comp_id         PT 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          B 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -17.521 
_atom_site.Cartn_y               3.474 
_atom_site.Cartn_z               -28.641 
_atom_site.occupancy             0.25 
_atom_site.B_iso_or_equiv        60.1 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PT 
_atom_site.auth_comp_id          PT 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          AAA 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#