data_7NPM
#
_model_server_result.job_id            eT4CUpkt1NeHt0KgJBP-og 
_model_server_result.datetime_utc      '2025-09-12 03:42:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7npm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    7NPM 
#
_exptl.entry_id    7NPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'D(-)-TARTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NPM 
_cell.length_a            37.72 
_cell.length_b            85.89 
_cell.length_c            33.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 AAA CYS 26 1_555 A SG CYS 80 AAA CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
disulf ? disulf2 A SG CYS 38 AAA CYS 39 1_555 A SG CYS 91 AAA CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 A SG CYS 56 AAA CYS 57 1_555 A SG CYS 106 AAA CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc1 A NE2 HIS 7 AAA HIS 8 1_555 B PT PT . AAA PT 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 A NE2 GLN 11 AAA GLN 12 1_555 B PT PT . AAA PT 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc3 A ND1 HIS 83 AAA HIS 84 1_555 C PT PT . AAA PT 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.839 ? 
metalc ? metalc4 A NE2 HIS 83 AAA HIS 84 1_555 D PT PT . AAA PT 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc5 A NH2 ARG 94 AAA ARG 95 1_555 C PT PT . AAA PT 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'C4 H6 O6' 
_chem_comp.formula_weight    150.087 
_chem_comp.id                TAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'D(-)-TARTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 TAR doub 290 n n 
O11 C1 TAR sing 291 n n 
O11 HO1 TAR sing 292 n n 
C1 C2 TAR sing 293 n n 
C2 O2 TAR sing 294 n n 
C2 C3 TAR sing 295 n n 
C2 H2 TAR sing 296 n n 
O2 HO2 TAR sing 297 n n 
C3 O3 TAR sing 298 n n 
C3 C4 TAR sing 299 n n 
C3 H3 TAR sing 300 n n 
O3 HO3 TAR sing 301 n n 
C4 O4 TAR doub 302 n n 
C4 O41 TAR sing 303 n n 
O41 HO4 TAR sing 304 n n 
#
_atom_sites.entry_id                     7NPM 
_atom_sites.fract_transf_matrix[1][1]    0.026511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PT AAA 1 201 1 PT PT . 
C 2 PT AAA 1 202 2 PT PT . 
D 2 PT AAA 1 203 3 PT PT . 
E 3 TAR AAA 1 204 1 TAR TAR . 
F 4 HOH AAA 1 301 89 HOH HOH . 
F 4 HOH AAA 2 302 70 HOH HOH . 
F 4 HOH AAA 3 303 95 HOH HOH . 
F 4 HOH AAA 4 304 18 HOH HOH . 
F 4 HOH AAA 5 305 62 HOH HOH . 
F 4 HOH AAA 6 306 49 HOH HOH . 
F 4 HOH AAA 7 307 56 HOH HOH . 
F 4 HOH AAA 8 308 60 HOH HOH . 
F 4 HOH AAA 9 309 57 HOH HOH . 
F 4 HOH AAA 10 310 37 HOH HOH . 
F 4 HOH AAA 11 311 4 HOH HOH . 
F 4 HOH AAA 12 312 6 HOH HOH . 
F 4 HOH AAA 13 313 10 HOH HOH . 
F 4 HOH AAA 14 314 54 HOH HOH . 
F 4 HOH AAA 15 315 23 HOH HOH . 
F 4 HOH AAA 16 316 35 HOH HOH . 
F 4 HOH AAA 17 317 74 HOH HOH . 
F 4 HOH AAA 18 318 77 HOH HOH . 
F 4 HOH AAA 19 319 36 HOH HOH . 
F 4 HOH AAA 20 320 42 HOH HOH . 
F 4 HOH AAA 21 321 11 HOH HOH . 
F 4 HOH AAA 22 322 69 HOH HOH . 
F 4 HOH AAA 23 323 86 HOH HOH . 
F 4 HOH AAA 24 324 65 HOH HOH . 
F 4 HOH AAA 25 325 21 HOH HOH . 
F 4 HOH AAA 26 326 12 HOH HOH . 
F 4 HOH AAA 27 327 26 HOH HOH . 
F 4 HOH AAA 28 328 33 HOH HOH . 
F 4 HOH AAA 29 329 53 HOH HOH . 
F 4 HOH AAA 30 330 58 HOH HOH . 
F 4 HOH AAA 31 331 25 HOH HOH . 
F 4 HOH AAA 32 332 27 HOH HOH . 
F 4 HOH AAA 33 333 8 HOH HOH . 
F 4 HOH AAA 34 334 45 HOH HOH . 
F 4 HOH AAA 35 335 9 HOH HOH . 
F 4 HOH AAA 36 336 15 HOH HOH . 
F 4 HOH AAA 37 337 48 HOH HOH . 
F 4 HOH AAA 38 338 40 HOH HOH . 
F 4 HOH AAA 39 339 66 HOH HOH . 
F 4 HOH AAA 40 340 43 HOH HOH . 
F 4 HOH AAA 41 341 34 HOH HOH . 
F 4 HOH AAA 42 342 1 HOH HOH . 
F 4 HOH AAA 43 343 30 HOH HOH . 
F 4 HOH AAA 44 344 17 HOH HOH . 
F 4 HOH AAA 45 345 7 HOH HOH . 
F 4 HOH AAA 46 346 13 HOH HOH . 
F 4 HOH AAA 47 347 20 HOH HOH . 
F 4 HOH AAA 48 348 63 HOH HOH . 
F 4 HOH AAA 49 349 38 HOH HOH . 
F 4 HOH AAA 50 350 73 HOH HOH . 
F 4 HOH AAA 51 351 16 HOH HOH . 
F 4 HOH AAA 52 352 85 HOH HOH . 
F 4 HOH AAA 53 353 3 HOH HOH . 
F 4 HOH AAA 54 354 39 HOH HOH . 
F 4 HOH AAA 55 355 82 HOH HOH . 
F 4 HOH AAA 56 356 80 HOH HOH . 
F 4 HOH AAA 57 357 14 HOH HOH . 
F 4 HOH AAA 58 358 46 HOH HOH . 
F 4 HOH AAA 59 359 2 HOH HOH . 
F 4 HOH AAA 60 360 44 HOH HOH . 
F 4 HOH AAA 61 361 19 HOH HOH . 
F 4 HOH AAA 62 362 59 HOH HOH . 
F 4 HOH AAA 63 363 68 HOH HOH . 
F 4 HOH AAA 64 364 88 HOH HOH . 
F 4 HOH AAA 65 365 24 HOH HOH . 
F 4 HOH AAA 66 366 55 HOH HOH . 
F 4 HOH AAA 67 367 41 HOH HOH . 
F 4 HOH AAA 68 368 94 HOH HOH . 
F 4 HOH AAA 69 369 81 HOH HOH . 
F 4 HOH AAA 70 370 61 HOH HOH . 
F 4 HOH AAA 71 371 83 HOH HOH . 
F 4 HOH AAA 72 372 75 HOH HOH . 
F 4 HOH AAA 73 373 50 HOH HOH . 
F 4 HOH AAA 74 374 67 HOH HOH . 
F 4 HOH AAA 75 375 29 HOH HOH . 
F 4 HOH AAA 76 376 71 HOH HOH . 
F 4 HOH AAA 77 377 87 HOH HOH . 
F 4 HOH AAA 78 378 79 HOH HOH . 
F 4 HOH AAA 79 379 51 HOH HOH . 
F 4 HOH AAA 80 380 72 HOH HOH . 
F 4 HOH AAA 81 381 93 HOH HOH . 
F 4 HOH AAA 82 382 78 HOH HOH . 
F 4 HOH AAA 83 383 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 TAR . . . E 3 -7.128 -4.13 -10.331 1 40.68 ? O1 TAR 204 AAA 1 
HETATM 2 O O11 TAR . . . E 3 -6.7 -3.162 -8.399 1 34.33 ? O11 TAR 204 AAA 1 
HETATM 3 C C1 TAR . . . E 3 -6.616 -3.223 -9.668 1 44.9 ? C1 TAR 204 AAA 1 
HETATM 4 C C2 TAR . . . E 3 -5.887 -2.198 -10.514 1 46.72 ? C2 TAR 204 AAA 1 
HETATM 5 O O2 TAR . . . E 3 -6.229 -0.843 -10.22 1 48.68 ? O2 TAR 204 AAA 1 
HETATM 6 C C3 TAR . . . E 3 -4.422 -2.344 -10.223 1 50.04 ? C3 TAR 204 AAA 1 
HETATM 7 O O3 TAR . . . E 3 -4.281 -2.311 -8.783 1 38.79 ? O3 TAR 204 AAA 1 
HETATM 8 C C4 TAR . . . E 3 -3.706 -1.251 -10.991 1 45.73 ? C4 TAR 204 AAA 1 
HETATM 9 O O4 TAR . . . E 3 -2.607 -1.537 -11.444 1 41.62 ? O4 TAR 204 AAA 1 
HETATM 10 O O41 TAR . . . E 3 -4.21 -0.114 -11.183 1 55.16 ? O41 TAR 204 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#