data_7NPO # _model_server_result.job_id vt6MmKND93pVATGhk6irig _model_server_result.datetime_utc '2024-10-10 23:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7npo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 7NPO # _exptl.entry_id 7NPO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.975 _cell.angle_gamma 90 _cell.entry_id 7NPO _cell.length_a 59.63 _cell.length_b 77.57 _cell.length_c 50.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 7NPO _atom_sites.fract_transf_matrix[1][1] 0.01677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011301 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 101 101 GOL GOL . E 4 HOH A 1 201 21 HOH HOH . E 4 HOH A 2 202 38 HOH HOH . E 4 HOH A 3 203 28 HOH HOH . E 4 HOH A 4 204 4 HOH HOH . E 4 HOH A 5 205 14 HOH HOH . E 4 HOH A 6 206 22 HOH HOH . E 4 HOH A 7 207 39 HOH HOH . E 4 HOH A 8 208 40 HOH HOH . E 4 HOH A 9 209 27 HOH HOH . E 4 HOH A 10 210 30 HOH HOH . F 4 HOH B 1 101 36 HOH HOH . F 4 HOH B 2 102 8 HOH HOH . F 4 HOH B 3 103 34 HOH HOH . F 4 HOH B 4 104 5 HOH HOH . F 4 HOH B 5 105 37 HOH HOH . G 4 HOH C 1 101 3 HOH HOH . G 4 HOH C 2 102 1 HOH HOH . G 4 HOH C 3 103 20 HOH HOH . G 4 HOH C 4 104 15 HOH HOH . G 4 HOH C 5 105 9 HOH HOH . G 4 HOH C 6 106 17 HOH HOH . G 4 HOH C 7 107 35 HOH HOH . G 4 HOH C 8 108 24 HOH HOH . G 4 HOH C 9 109 13 HOH HOH . G 4 HOH C 10 110 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 30.973 20.207 -0.508 0.5 56.86 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . D 3 31.925 19.283 -0.936 0.5 57.41 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . D 3 29.635 19.445 -0.363 0.5 59.42 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . D 3 29.829 18.119 -0.003 0.5 58.27 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . D 3 28.848 20.235 0.71 0.5 62.33 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . D 3 27.754 19.449 1.068 0.5 60.88 ? O3 GOL 101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #