data_7NPY
#
_model_server_result.job_id            '_d_x-DqV61VcpEbJPtA95w' 
_model_server_result.datetime_utc      '2024-11-25 02:02:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7npy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    7NPY 
#
_exptl.entry_id    7NPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NPY 
_cell.length_a            72.047 
_cell.length_b            52.31 
_cell.length_c            32.087 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7NPY 
_atom_sites.fract_transf_matrix[1][1]    0.01388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031165 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UL5 AAA 1 501 4000 UL5 LIG . 
C 3 EDO AAA 1 502 1 EDO EDO . 
D 3 EDO AAA 1 503 2 EDO EDO . 
E 3 EDO AAA 1 504 3 EDO EDO . 
F 4 HOH AAA 1 601 111 HOH HOH . 
F 4 HOH AAA 2 602 132 HOH HOH . 
F 4 HOH AAA 3 603 29 HOH HOH . 
F 4 HOH AAA 4 604 69 HOH HOH . 
F 4 HOH AAA 5 605 85 HOH HOH . 
F 4 HOH AAA 6 606 35 HOH HOH . 
F 4 HOH AAA 7 607 144 HOH HOH . 
F 4 HOH AAA 8 608 152 HOH HOH . 
F 4 HOH AAA 9 609 9 HOH HOH . 
F 4 HOH AAA 10 610 133 HOH HOH . 
F 4 HOH AAA 11 611 5 HOH HOH . 
F 4 HOH AAA 12 612 21 HOH HOH . 
F 4 HOH AAA 13 613 61 HOH HOH . 
F 4 HOH AAA 14 614 59 HOH HOH . 
F 4 HOH AAA 15 615 18 HOH HOH . 
F 4 HOH AAA 16 616 1 HOH HOH . 
F 4 HOH AAA 17 617 115 HOH HOH . 
F 4 HOH AAA 18 618 103 HOH HOH . 
F 4 HOH AAA 19 619 42 HOH HOH . 
F 4 HOH AAA 20 620 8 HOH HOH . 
F 4 HOH AAA 21 621 153 HOH HOH . 
F 4 HOH AAA 22 622 74 HOH HOH . 
F 4 HOH AAA 23 623 137 HOH HOH . 
F 4 HOH AAA 24 624 75 HOH HOH . 
F 4 HOH AAA 25 625 63 HOH HOH . 
F 4 HOH AAA 26 626 51 HOH HOH . 
F 4 HOH AAA 27 627 114 HOH HOH . 
F 4 HOH AAA 28 628 78 HOH HOH . 
F 4 HOH AAA 29 629 84 HOH HOH . 
F 4 HOH AAA 30 630 36 HOH HOH . 
F 4 HOH AAA 31 631 56 HOH HOH . 
F 4 HOH AAA 32 632 32 HOH HOH . 
F 4 HOH AAA 33 633 31 HOH HOH . 
F 4 HOH AAA 34 634 12 HOH HOH . 
F 4 HOH AAA 35 635 47 HOH HOH . 
F 4 HOH AAA 36 636 28 HOH HOH . 
F 4 HOH AAA 37 637 24 HOH HOH . 
F 4 HOH AAA 38 638 64 HOH HOH . 
F 4 HOH AAA 39 639 112 HOH HOH . 
F 4 HOH AAA 40 640 13 HOH HOH . 
F 4 HOH AAA 41 641 15 HOH HOH . 
F 4 HOH AAA 42 642 76 HOH HOH . 
F 4 HOH AAA 43 643 96 HOH HOH . 
F 4 HOH AAA 44 644 6 HOH HOH . 
F 4 HOH AAA 45 645 113 HOH HOH . 
F 4 HOH AAA 46 646 87 HOH HOH . 
F 4 HOH AAA 47 647 11 HOH HOH . 
F 4 HOH AAA 48 648 46 HOH HOH . 
F 4 HOH AAA 49 649 27 HOH HOH . 
F 4 HOH AAA 50 650 7 HOH HOH . 
F 4 HOH AAA 51 651 125 HOH HOH . 
F 4 HOH AAA 52 652 22 HOH HOH . 
F 4 HOH AAA 53 653 82 HOH HOH . 
F 4 HOH AAA 54 654 48 HOH HOH . 
F 4 HOH AAA 55 655 55 HOH HOH . 
F 4 HOH AAA 56 656 83 HOH HOH . 
F 4 HOH AAA 57 657 79 HOH HOH . 
F 4 HOH AAA 58 658 104 HOH HOH . 
F 4 HOH AAA 59 659 108 HOH HOH . 
F 4 HOH AAA 60 660 20 HOH HOH . 
F 4 HOH AAA 61 661 2 HOH HOH . 
F 4 HOH AAA 62 662 136 HOH HOH . 
F 4 HOH AAA 63 663 135 HOH HOH . 
F 4 HOH AAA 64 664 110 HOH HOH . 
F 4 HOH AAA 65 665 16 HOH HOH . 
F 4 HOH AAA 66 666 91 HOH HOH . 
F 4 HOH AAA 67 667 93 HOH HOH . 
F 4 HOH AAA 68 668 77 HOH HOH . 
F 4 HOH AAA 69 669 154 HOH HOH . 
F 4 HOH AAA 70 670 4 HOH HOH . 
F 4 HOH AAA 71 671 68 HOH HOH . 
F 4 HOH AAA 72 672 37 HOH HOH . 
F 4 HOH AAA 73 673 41 HOH HOH . 
F 4 HOH AAA 74 674 10 HOH HOH . 
F 4 HOH AAA 75 675 161 HOH HOH . 
F 4 HOH AAA 76 676 14 HOH HOH . 
F 4 HOH AAA 77 677 17 HOH HOH . 
F 4 HOH AAA 78 678 148 HOH HOH . 
F 4 HOH AAA 79 679 45 HOH HOH . 
F 4 HOH AAA 80 680 105 HOH HOH . 
F 4 HOH AAA 81 681 43 HOH HOH . 
F 4 HOH AAA 82 682 23 HOH HOH . 
F 4 HOH AAA 83 683 140 HOH HOH . 
F 4 HOH AAA 84 684 147 HOH HOH . 
F 4 HOH AAA 85 685 50 HOH HOH . 
F 4 HOH AAA 86 686 131 HOH HOH . 
F 4 HOH AAA 87 687 3 HOH HOH . 
F 4 HOH AAA 88 688 53 HOH HOH . 
F 4 HOH AAA 89 689 90 HOH HOH . 
F 4 HOH AAA 90 690 19 HOH HOH . 
F 4 HOH AAA 91 691 26 HOH HOH . 
F 4 HOH AAA 92 692 30 HOH HOH . 
F 4 HOH AAA 93 693 39 HOH HOH . 
F 4 HOH AAA 94 694 25 HOH HOH . 
F 4 HOH AAA 95 695 52 HOH HOH . 
F 4 HOH AAA 96 696 33 HOH HOH . 
F 4 HOH AAA 97 697 73 HOH HOH . 
F 4 HOH AAA 98 698 109 HOH HOH . 
F 4 HOH AAA 99 699 138 HOH HOH . 
F 4 HOH AAA 100 700 159 HOH HOH . 
F 4 HOH AAA 101 701 38 HOH HOH . 
F 4 HOH AAA 102 702 44 HOH HOH . 
F 4 HOH AAA 103 703 121 HOH HOH . 
F 4 HOH AAA 104 704 120 HOH HOH . 
F 4 HOH AAA 105 705 160 HOH HOH . 
F 4 HOH AAA 106 706 130 HOH HOH . 
F 4 HOH AAA 107 707 156 HOH HOH . 
F 4 HOH AAA 108 708 143 HOH HOH . 
F 4 HOH AAA 109 709 34 HOH HOH . 
F 4 HOH AAA 110 710 62 HOH HOH . 
F 4 HOH AAA 111 711 151 HOH HOH . 
F 4 HOH AAA 112 712 70 HOH HOH . 
F 4 HOH AAA 113 713 134 HOH HOH . 
F 4 HOH AAA 114 714 57 HOH HOH . 
F 4 HOH AAA 115 715 155 HOH HOH . 
F 4 HOH AAA 116 716 119 HOH HOH . 
F 4 HOH AAA 117 717 107 HOH HOH . 
F 4 HOH AAA 118 718 95 HOH HOH . 
F 4 HOH AAA 119 719 71 HOH HOH . 
F 4 HOH AAA 120 720 67 HOH HOH . 
F 4 HOH AAA 121 721 102 HOH HOH . 
F 4 HOH AAA 122 722 118 HOH HOH . 
F 4 HOH AAA 123 723 40 HOH HOH . 
F 4 HOH AAA 124 724 128 HOH HOH . 
F 4 HOH AAA 125 725 139 HOH HOH . 
F 4 HOH AAA 126 726 86 HOH HOH . 
F 4 HOH AAA 127 727 94 HOH HOH . 
F 4 HOH AAA 128 728 81 HOH HOH . 
F 4 HOH AAA 129 729 98 HOH HOH . 
F 4 HOH AAA 130 730 106 HOH HOH . 
F 4 HOH AAA 131 731 124 HOH HOH . 
F 4 HOH AAA 132 732 162 HOH HOH . 
F 4 HOH AAA 133 733 58 HOH HOH . 
F 4 HOH AAA 134 734 145 HOH HOH . 
F 4 HOH AAA 135 735 141 HOH HOH . 
F 4 HOH AAA 136 736 126 HOH HOH . 
F 4 HOH AAA 137 737 89 HOH HOH . 
F 4 HOH AAA 138 738 142 HOH HOH . 
F 4 HOH AAA 139 739 99 HOH HOH . 
F 4 HOH AAA 140 740 49 HOH HOH . 
F 4 HOH AAA 141 741 92 HOH HOH . 
F 4 HOH AAA 142 742 146 HOH HOH . 
F 4 HOH AAA 143 743 97 HOH HOH . 
F 4 HOH AAA 144 744 150 HOH HOH . 
F 4 HOH AAA 145 745 65 HOH HOH . 
F 4 HOH AAA 146 746 88 HOH HOH . 
F 4 HOH AAA 147 747 122 HOH HOH . 
F 4 HOH AAA 148 748 66 HOH HOH . 
F 4 HOH AAA 149 749 100 HOH HOH . 
F 4 HOH AAA 150 750 158 HOH HOH . 
F 4 HOH AAA 151 751 80 HOH HOH . 
F 4 HOH AAA 152 752 117 HOH HOH . 
F 4 HOH AAA 153 753 116 HOH HOH . 
F 4 HOH AAA 154 754 54 HOH HOH . 
F 4 HOH AAA 155 755 149 HOH HOH . 
F 4 HOH AAA 156 756 60 HOH HOH . 
F 4 HOH AAA 157 757 157 HOH HOH . 
F 4 HOH AAA 158 758 129 HOH HOH . 
F 4 HOH AAA 159 759 101 HOH HOH . 
F 4 HOH AAA 160 760 127 HOH HOH . 
F 4 HOH AAA 161 761 72 HOH HOH . 
F 4 HOH AAA 162 762 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 35.315 10.229 -14.039 1 31.1 ? C1 EDO 503 AAA 1 
HETATM 2 O O1 EDO . . . D 3 34.467 11.06 -13.264 1 30.69 ? O1 EDO 503 AAA 1 
HETATM 3 C C2 EDO . . . D 3 35.309 10.566 -15.484 1 28.58 ? C2 EDO 503 AAA 1 
HETATM 4 O O2 EDO . . . D 3 34.018 10.844 -15.984 1 27.35 ? O2 EDO 503 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#