data_7NPZ
#
_model_server_result.job_id            vTdHTLzAubZXyXQLpSF4FQ 
_model_server_result.datetime_utc      '2024-11-08 21:14:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7npz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7NPZ 
#
_exptl.entry_id    7NPZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NPZ 
_cell.length_a            71.86 
_cell.length_b            52.31 
_cell.length_c            31.97 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NPZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7NPZ 
_atom_sites.fract_transf_matrix[1][1]    0.013916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031279 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO AAA 1 501 1 EDO EDO . 
C 2 EDO AAA 1 502 2 EDO EDO . 
D 2 EDO AAA 1 503 3 EDO EDO . 
E 3 ULH AAA 1 504 1 ULH LIG . 
F 4 HOH AAA 1 601 44 HOH HOH . 
F 4 HOH AAA 2 602 195 HOH HOH . 
F 4 HOH AAA 3 603 28 HOH HOH . 
F 4 HOH AAA 4 604 143 HOH HOH . 
F 4 HOH AAA 5 605 8 HOH HOH . 
F 4 HOH AAA 6 606 4 HOH HOH . 
F 4 HOH AAA 7 607 91 HOH HOH . 
F 4 HOH AAA 8 608 43 HOH HOH . 
F 4 HOH AAA 9 609 170 HOH HOH . 
F 4 HOH AAA 10 610 69 HOH HOH . 
F 4 HOH AAA 11 611 106 HOH HOH . 
F 4 HOH AAA 12 612 67 HOH HOH . 
F 4 HOH AAA 13 613 142 HOH HOH . 
F 4 HOH AAA 14 614 38 HOH HOH . 
F 4 HOH AAA 15 615 83 HOH HOH . 
F 4 HOH AAA 16 616 66 HOH HOH . 
F 4 HOH AAA 17 617 20 HOH HOH . 
F 4 HOH AAA 18 618 33 HOH HOH . 
F 4 HOH AAA 19 619 62 HOH HOH . 
F 4 HOH AAA 20 620 214 HOH HOH . 
F 4 HOH AAA 21 621 151 HOH HOH . 
F 4 HOH AAA 22 622 14 HOH HOH . 
F 4 HOH AAA 23 623 57 HOH HOH . 
F 4 HOH AAA 24 624 72 HOH HOH . 
F 4 HOH AAA 25 625 172 HOH HOH . 
F 4 HOH AAA 26 626 51 HOH HOH . 
F 4 HOH AAA 27 627 47 HOH HOH . 
F 4 HOH AAA 28 628 189 HOH HOH . 
F 4 HOH AAA 29 629 206 HOH HOH . 
F 4 HOH AAA 30 630 65 HOH HOH . 
F 4 HOH AAA 31 631 6 HOH HOH . 
F 4 HOH AAA 32 632 61 HOH HOH . 
F 4 HOH AAA 33 633 5 HOH HOH . 
F 4 HOH AAA 34 634 13 HOH HOH . 
F 4 HOH AAA 35 635 121 HOH HOH . 
F 4 HOH AAA 36 636 86 HOH HOH . 
F 4 HOH AAA 37 637 36 HOH HOH . 
F 4 HOH AAA 38 638 35 HOH HOH . 
F 4 HOH AAA 39 639 100 HOH HOH . 
F 4 HOH AAA 40 640 87 HOH HOH . 
F 4 HOH AAA 41 641 7 HOH HOH . 
F 4 HOH AAA 42 642 80 HOH HOH . 
F 4 HOH AAA 43 643 137 HOH HOH . 
F 4 HOH AAA 44 644 18 HOH HOH . 
F 4 HOH AAA 45 645 10 HOH HOH . 
F 4 HOH AAA 46 646 161 HOH HOH . 
F 4 HOH AAA 47 647 9 HOH HOH . 
F 4 HOH AAA 48 648 39 HOH HOH . 
F 4 HOH AAA 49 649 96 HOH HOH . 
F 4 HOH AAA 50 650 70 HOH HOH . 
F 4 HOH AAA 51 651 26 HOH HOH . 
F 4 HOH AAA 52 652 97 HOH HOH . 
F 4 HOH AAA 53 653 59 HOH HOH . 
F 4 HOH AAA 54 654 29 HOH HOH . 
F 4 HOH AAA 55 655 147 HOH HOH . 
F 4 HOH AAA 56 656 174 HOH HOH . 
F 4 HOH AAA 57 657 25 HOH HOH . 
F 4 HOH AAA 58 658 162 HOH HOH . 
F 4 HOH AAA 59 659 21 HOH HOH . 
F 4 HOH AAA 60 660 2 HOH HOH . 
F 4 HOH AAA 61 661 48 HOH HOH . 
F 4 HOH AAA 62 662 27 HOH HOH . 
F 4 HOH AAA 63 663 12 HOH HOH . 
F 4 HOH AAA 64 664 68 HOH HOH . 
F 4 HOH AAA 65 665 63 HOH HOH . 
F 4 HOH AAA 66 666 190 HOH HOH . 
F 4 HOH AAA 67 667 23 HOH HOH . 
F 4 HOH AAA 68 668 217 HOH HOH . 
F 4 HOH AAA 69 669 167 HOH HOH . 
F 4 HOH AAA 70 670 130 HOH HOH . 
F 4 HOH AAA 71 671 187 HOH HOH . 
F 4 HOH AAA 72 672 16 HOH HOH . 
F 4 HOH AAA 73 673 60 HOH HOH . 
F 4 HOH AAA 74 674 113 HOH HOH . 
F 4 HOH AAA 75 675 179 HOH HOH . 
F 4 HOH AAA 76 676 40 HOH HOH . 
F 4 HOH AAA 77 677 93 HOH HOH . 
F 4 HOH AAA 78 678 45 HOH HOH . 
F 4 HOH AAA 79 679 49 HOH HOH . 
F 4 HOH AAA 80 680 216 HOH HOH . 
F 4 HOH AAA 81 681 191 HOH HOH . 
F 4 HOH AAA 82 682 176 HOH HOH . 
F 4 HOH AAA 83 683 17 HOH HOH . 
F 4 HOH AAA 84 684 144 HOH HOH . 
F 4 HOH AAA 85 685 41 HOH HOH . 
F 4 HOH AAA 86 686 3 HOH HOH . 
F 4 HOH AAA 87 687 15 HOH HOH . 
F 4 HOH AAA 88 688 52 HOH HOH . 
F 4 HOH AAA 89 689 95 HOH HOH . 
F 4 HOH AAA 90 690 105 HOH HOH . 
F 4 HOH AAA 91 691 135 HOH HOH . 
F 4 HOH AAA 92 692 152 HOH HOH . 
F 4 HOH AAA 93 693 53 HOH HOH . 
F 4 HOH AAA 94 694 197 HOH HOH . 
F 4 HOH AAA 95 695 22 HOH HOH . 
F 4 HOH AAA 96 696 24 HOH HOH . 
F 4 HOH AAA 97 697 75 HOH HOH . 
F 4 HOH AAA 98 698 94 HOH HOH . 
F 4 HOH AAA 99 699 111 HOH HOH . 
F 4 HOH AAA 100 700 182 HOH HOH . 
F 4 HOH AAA 101 701 213 HOH HOH . 
F 4 HOH AAA 102 702 181 HOH HOH . 
F 4 HOH AAA 103 703 30 HOH HOH . 
F 4 HOH AAA 104 704 163 HOH HOH . 
F 4 HOH AAA 105 705 31 HOH HOH . 
F 4 HOH AAA 106 706 211 HOH HOH . 
F 4 HOH AAA 107 707 50 HOH HOH . 
F 4 HOH AAA 108 708 19 HOH HOH . 
F 4 HOH AAA 109 709 42 HOH HOH . 
F 4 HOH AAA 110 710 11 HOH HOH . 
F 4 HOH AAA 111 711 205 HOH HOH . 
F 4 HOH AAA 112 712 188 HOH HOH . 
F 4 HOH AAA 113 713 1 HOH HOH . 
F 4 HOH AAA 114 714 212 HOH HOH . 
F 4 HOH AAA 115 715 116 HOH HOH . 
F 4 HOH AAA 116 716 73 HOH HOH . 
F 4 HOH AAA 117 717 37 HOH HOH . 
F 4 HOH AAA 118 718 78 HOH HOH . 
F 4 HOH AAA 119 719 56 HOH HOH . 
F 4 HOH AAA 120 720 84 HOH HOH . 
F 4 HOH AAA 121 721 104 HOH HOH . 
F 4 HOH AAA 122 722 92 HOH HOH . 
F 4 HOH AAA 123 723 117 HOH HOH . 
F 4 HOH AAA 124 724 145 HOH HOH . 
F 4 HOH AAA 125 725 204 HOH HOH . 
F 4 HOH AAA 126 726 112 HOH HOH . 
F 4 HOH AAA 127 727 134 HOH HOH . 
F 4 HOH AAA 128 728 173 HOH HOH . 
F 4 HOH AAA 129 729 210 HOH HOH . 
F 4 HOH AAA 130 730 32 HOH HOH . 
F 4 HOH AAA 131 731 140 HOH HOH . 
F 4 HOH AAA 132 732 198 HOH HOH . 
F 4 HOH AAA 133 733 141 HOH HOH . 
F 4 HOH AAA 134 734 109 HOH HOH . 
F 4 HOH AAA 135 735 133 HOH HOH . 
F 4 HOH AAA 136 736 55 HOH HOH . 
F 4 HOH AAA 137 737 200 HOH HOH . 
F 4 HOH AAA 138 738 124 HOH HOH . 
F 4 HOH AAA 139 739 58 HOH HOH . 
F 4 HOH AAA 140 740 155 HOH HOH . 
F 4 HOH AAA 141 741 193 HOH HOH . 
F 4 HOH AAA 142 742 184 HOH HOH . 
F 4 HOH AAA 143 743 139 HOH HOH . 
F 4 HOH AAA 144 744 209 HOH HOH . 
F 4 HOH AAA 145 745 156 HOH HOH . 
F 4 HOH AAA 146 746 79 HOH HOH . 
F 4 HOH AAA 147 747 85 HOH HOH . 
F 4 HOH AAA 148 748 115 HOH HOH . 
F 4 HOH AAA 149 749 71 HOH HOH . 
F 4 HOH AAA 150 750 196 HOH HOH . 
F 4 HOH AAA 151 751 166 HOH HOH . 
F 4 HOH AAA 152 752 54 HOH HOH . 
F 4 HOH AAA 153 753 157 HOH HOH . 
F 4 HOH AAA 154 754 154 HOH HOH . 
F 4 HOH AAA 155 755 103 HOH HOH . 
F 4 HOH AAA 156 756 101 HOH HOH . 
F 4 HOH AAA 157 757 208 HOH HOH . 
F 4 HOH AAA 158 758 183 HOH HOH . 
F 4 HOH AAA 159 759 46 HOH HOH . 
F 4 HOH AAA 160 760 34 HOH HOH . 
F 4 HOH AAA 161 761 77 HOH HOH . 
F 4 HOH AAA 162 762 119 HOH HOH . 
F 4 HOH AAA 163 763 125 HOH HOH . 
F 4 HOH AAA 164 764 127 HOH HOH . 
F 4 HOH AAA 165 765 177 HOH HOH . 
F 4 HOH AAA 166 766 126 HOH HOH . 
F 4 HOH AAA 167 767 107 HOH HOH . 
F 4 HOH AAA 168 768 128 HOH HOH . 
F 4 HOH AAA 169 769 64 HOH HOH . 
F 4 HOH AAA 170 770 215 HOH HOH . 
F 4 HOH AAA 171 771 153 HOH HOH . 
F 4 HOH AAA 172 772 88 HOH HOH . 
F 4 HOH AAA 173 773 164 HOH HOH . 
F 4 HOH AAA 174 774 120 HOH HOH . 
F 4 HOH AAA 175 775 74 HOH HOH . 
F 4 HOH AAA 176 776 76 HOH HOH . 
F 4 HOH AAA 177 777 201 HOH HOH . 
F 4 HOH AAA 178 778 178 HOH HOH . 
F 4 HOH AAA 179 779 185 HOH HOH . 
F 4 HOH AAA 180 780 202 HOH HOH . 
F 4 HOH AAA 181 781 102 HOH HOH . 
F 4 HOH AAA 182 782 122 HOH HOH . 
F 4 HOH AAA 183 783 90 HOH HOH . 
F 4 HOH AAA 184 784 114 HOH HOH . 
F 4 HOH AAA 185 785 98 HOH HOH . 
F 4 HOH AAA 186 786 159 HOH HOH . 
F 4 HOH AAA 187 787 199 HOH HOH . 
F 4 HOH AAA 188 788 168 HOH HOH . 
F 4 HOH AAA 189 789 81 HOH HOH . 
F 4 HOH AAA 190 790 108 HOH HOH . 
F 4 HOH AAA 191 791 131 HOH HOH . 
F 4 HOH AAA 192 792 207 HOH HOH . 
F 4 HOH AAA 193 793 165 HOH HOH . 
F 4 HOH AAA 194 794 123 HOH HOH . 
F 4 HOH AAA 195 795 132 HOH HOH . 
F 4 HOH AAA 196 796 150 HOH HOH . 
F 4 HOH AAA 197 797 99 HOH HOH . 
F 4 HOH AAA 198 798 146 HOH HOH . 
F 4 HOH AAA 199 799 149 HOH HOH . 
F 4 HOH AAA 200 800 118 HOH HOH . 
F 4 HOH AAA 201 801 158 HOH HOH . 
F 4 HOH AAA 202 802 169 HOH HOH . 
F 4 HOH AAA 203 803 110 HOH HOH . 
F 4 HOH AAA 204 804 180 HOH HOH . 
F 4 HOH AAA 205 805 82 HOH HOH . 
F 4 HOH AAA 206 806 186 HOH HOH . 
F 4 HOH AAA 207 807 148 HOH HOH . 
F 4 HOH AAA 208 808 129 HOH HOH . 
F 4 HOH AAA 209 809 192 HOH HOH . 
F 4 HOH AAA 210 810 138 HOH HOH . 
F 4 HOH AAA 211 811 136 HOH HOH . 
F 4 HOH AAA 212 812 89 HOH HOH . 
F 4 HOH AAA 213 813 160 HOH HOH . 
F 4 HOH AAA 214 814 171 HOH HOH . 
F 4 HOH AAA 215 815 194 HOH HOH . 
F 4 HOH AAA 216 816 203 HOH HOH . 
F 4 HOH AAA 217 817 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 35.156 10.286 -13.835 1 32.65 ? C1 EDO 502 AAA 1 
HETATM 2 O O1 EDO . . . C 2 34.269 11.107 -13.098 1 32.07 ? O1 EDO 502 AAA 1 
HETATM 3 C C2 EDO . . . C 2 35.163 10.587 -15.287 1 31.75 ? C2 EDO 502 AAA 1 
HETATM 4 O O2 EDO . . . C 2 33.874 10.798 -15.822 1 31.03 ? O2 EDO 502 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#