data_7NQ6 # _model_server_result.job_id 3xf6jdKCK76woLkvfyA8Nw _model_server_result.datetime_utc '2024-10-10 01:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 7NQ6 # _exptl.entry_id 7NQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NQ6 _cell.length_a 72.07 _cell.length_b 72.07 _cell.length_c 91.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 44 A PHE 758 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc2 A O GLN 92 A GLN 806 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc3 A OG1 THR 94 A THR 808 1_555 D NA NA . A NA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc4 A O ASP 96 A ASP 810 1_555 C NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc5 A OE2 GLU 141 A GLU 855 1_555 E NA NA . A NA 904 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc6 D NA NA . A NA 903 1_555 I O HOH . A HOH 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc7 E NA NA . A NA 904 1_555 I O HOH . A HOH 1161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc8 E NA NA . A NA 904 1_555 I O HOH . A HOH 1180 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NQ6 _atom_sites.fract_transf_matrix[1][1] 0.013875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 901 1 MPD MPD . C 3 NA A 1 902 1 NA NA . D 3 NA A 1 903 2 NA NA . E 3 NA A 1 904 3 NA NA . F 4 CL A 1 905 1 CL CL . G 4 CL A 1 906 2 CL CL . H 4 CL A 1 907 3 CL CL . I 5 HOH A 1 1001 104 HOH HOH . I 5 HOH A 2 1002 162 HOH HOH . I 5 HOH A 3 1003 68 HOH HOH . I 5 HOH A 4 1004 71 HOH HOH . I 5 HOH A 5 1005 130 HOH HOH . I 5 HOH A 6 1006 237 HOH HOH . I 5 HOH A 7 1007 52 HOH HOH . I 5 HOH A 8 1008 204 HOH HOH . I 5 HOH A 9 1009 17 HOH HOH . I 5 HOH A 10 1010 198 HOH HOH . I 5 HOH A 11 1011 122 HOH HOH . I 5 HOH A 12 1012 234 HOH HOH . I 5 HOH A 13 1013 13 HOH HOH . I 5 HOH A 14 1014 84 HOH HOH . I 5 HOH A 15 1015 77 HOH HOH . I 5 HOH A 16 1016 221 HOH HOH . I 5 HOH A 17 1017 150 HOH HOH . I 5 HOH A 18 1018 149 HOH HOH . I 5 HOH A 19 1019 76 HOH HOH . I 5 HOH A 20 1020 165 HOH HOH . I 5 HOH A 21 1021 113 HOH HOH . I 5 HOH A 22 1022 80 HOH HOH . I 5 HOH A 23 1023 65 HOH HOH . I 5 HOH A 24 1024 145 HOH HOH . I 5 HOH A 25 1025 57 HOH HOH . I 5 HOH A 26 1026 63 HOH HOH . I 5 HOH A 27 1027 73 HOH HOH . I 5 HOH A 28 1028 82 HOH HOH . I 5 HOH A 29 1029 72 HOH HOH . I 5 HOH A 30 1030 34 HOH HOH . I 5 HOH A 31 1031 23 HOH HOH . I 5 HOH A 32 1032 179 HOH HOH . I 5 HOH A 33 1033 18 HOH HOH . I 5 HOH A 34 1034 106 HOH HOH . I 5 HOH A 35 1035 16 HOH HOH . I 5 HOH A 36 1036 78 HOH HOH . I 5 HOH A 37 1037 177 HOH HOH . I 5 HOH A 38 1038 36 HOH HOH . I 5 HOH A 39 1039 138 HOH HOH . I 5 HOH A 40 1040 87 HOH HOH . I 5 HOH A 41 1041 74 HOH HOH . I 5 HOH A 42 1042 20 HOH HOH . I 5 HOH A 43 1043 90 HOH HOH . I 5 HOH A 44 1044 121 HOH HOH . I 5 HOH A 45 1045 120 HOH HOH . I 5 HOH A 46 1046 210 HOH HOH . I 5 HOH A 47 1047 28 HOH HOH . I 5 HOH A 48 1048 43 HOH HOH . I 5 HOH A 49 1049 47 HOH HOH . I 5 HOH A 50 1050 107 HOH HOH . I 5 HOH A 51 1051 66 HOH HOH . I 5 HOH A 52 1052 134 HOH HOH . I 5 HOH A 53 1053 129 HOH HOH . I 5 HOH A 54 1054 147 HOH HOH . I 5 HOH A 55 1055 42 HOH HOH . I 5 HOH A 56 1056 41 HOH HOH . I 5 HOH A 57 1057 133 HOH HOH . I 5 HOH A 58 1058 176 HOH HOH . I 5 HOH A 59 1059 8 HOH HOH . I 5 HOH A 60 1060 49 HOH HOH . I 5 HOH A 61 1061 196 HOH HOH . I 5 HOH A 62 1062 60 HOH HOH . I 5 HOH A 63 1063 242 HOH HOH . I 5 HOH A 64 1064 26 HOH HOH . I 5 HOH A 65 1065 98 HOH HOH . I 5 HOH A 66 1066 4 HOH HOH . I 5 HOH A 67 1067 12 HOH HOH . I 5 HOH A 68 1068 97 HOH HOH . I 5 HOH A 69 1069 223 HOH HOH . I 5 HOH A 70 1070 155 HOH HOH . I 5 HOH A 71 1071 93 HOH HOH . I 5 HOH A 72 1072 168 HOH HOH . I 5 HOH A 73 1073 39 HOH HOH . I 5 HOH A 74 1074 94 HOH HOH . I 5 HOH A 75 1075 3 HOH HOH . I 5 HOH A 76 1076 152 HOH HOH . I 5 HOH A 77 1077 45 HOH HOH . I 5 HOH A 78 1078 1 HOH HOH . I 5 HOH A 79 1079 38 HOH HOH . I 5 HOH A 80 1080 46 HOH HOH . I 5 HOH A 81 1081 14 HOH HOH . I 5 HOH A 82 1082 6 HOH HOH . I 5 HOH A 83 1083 217 HOH HOH . I 5 HOH A 84 1084 137 HOH HOH . I 5 HOH A 85 1085 75 HOH HOH . I 5 HOH A 86 1086 67 HOH HOH . I 5 HOH A 87 1087 201 HOH HOH . I 5 HOH A 88 1088 238 HOH HOH . I 5 HOH A 89 1089 30 HOH HOH . I 5 HOH A 90 1090 231 HOH HOH . I 5 HOH A 91 1091 247 HOH HOH . I 5 HOH A 92 1092 31 HOH HOH . I 5 HOH A 93 1093 185 HOH HOH . I 5 HOH A 94 1094 22 HOH HOH . I 5 HOH A 95 1095 232 HOH HOH . I 5 HOH A 96 1096 5 HOH HOH . I 5 HOH A 97 1097 136 HOH HOH . I 5 HOH A 98 1098 21 HOH HOH . I 5 HOH A 99 1099 7 HOH HOH . I 5 HOH A 100 1100 132 HOH HOH . I 5 HOH A 101 1101 54 HOH HOH . I 5 HOH A 102 1102 70 HOH HOH . I 5 HOH A 103 1103 243 HOH HOH . I 5 HOH A 104 1104 163 HOH HOH . I 5 HOH A 105 1105 186 HOH HOH . I 5 HOH A 106 1106 59 HOH HOH . I 5 HOH A 107 1107 11 HOH HOH . I 5 HOH A 108 1108 62 HOH HOH . I 5 HOH A 109 1109 69 HOH HOH . I 5 HOH A 110 1110 126 HOH HOH . I 5 HOH A 111 1111 187 HOH HOH . I 5 HOH A 112 1112 148 HOH HOH . I 5 HOH A 113 1113 103 HOH HOH . I 5 HOH A 114 1114 218 HOH HOH . I 5 HOH A 115 1115 50 HOH HOH . I 5 HOH A 116 1116 48 HOH HOH . I 5 HOH A 117 1117 184 HOH HOH . I 5 HOH A 118 1118 229 HOH HOH . I 5 HOH A 119 1119 2 HOH HOH . I 5 HOH A 120 1120 105 HOH HOH . I 5 HOH A 121 1121 244 HOH HOH . I 5 HOH A 122 1122 96 HOH HOH . I 5 HOH A 123 1123 53 HOH HOH . I 5 HOH A 124 1124 32 HOH HOH . I 5 HOH A 125 1125 24 HOH HOH . I 5 HOH A 126 1126 249 HOH HOH . I 5 HOH A 127 1127 15 HOH HOH . I 5 HOH A 128 1128 255 HOH HOH . I 5 HOH A 129 1129 27 HOH HOH . I 5 HOH A 130 1130 169 HOH HOH . I 5 HOH A 131 1131 191 HOH HOH . I 5 HOH A 132 1132 33 HOH HOH . I 5 HOH A 133 1133 56 HOH HOH . I 5 HOH A 134 1134 178 HOH HOH . I 5 HOH A 135 1135 10 HOH HOH . I 5 HOH A 136 1136 115 HOH HOH . I 5 HOH A 137 1137 109 HOH HOH . I 5 HOH A 138 1138 166 HOH HOH . I 5 HOH A 139 1139 35 HOH HOH . I 5 HOH A 140 1140 254 HOH HOH . I 5 HOH A 141 1141 140 HOH HOH . I 5 HOH A 142 1142 170 HOH HOH . I 5 HOH A 143 1143 88 HOH HOH . I 5 HOH A 144 1144 192 HOH HOH . I 5 HOH A 145 1145 211 HOH HOH . I 5 HOH A 146 1146 112 HOH HOH . I 5 HOH A 147 1147 241 HOH HOH . I 5 HOH A 148 1148 251 HOH HOH . I 5 HOH A 149 1149 240 HOH HOH . I 5 HOH A 150 1150 89 HOH HOH . I 5 HOH A 151 1151 183 HOH HOH . I 5 HOH A 152 1152 167 HOH HOH . I 5 HOH A 153 1153 209 HOH HOH . I 5 HOH A 154 1154 116 HOH HOH . I 5 HOH A 155 1155 55 HOH HOH . I 5 HOH A 156 1156 58 HOH HOH . I 5 HOH A 157 1157 193 HOH HOH . I 5 HOH A 158 1158 37 HOH HOH . I 5 HOH A 159 1159 256 HOH HOH . I 5 HOH A 160 1160 215 HOH HOH . I 5 HOH A 161 1161 44 HOH HOH . I 5 HOH A 162 1162 131 HOH HOH . I 5 HOH A 163 1163 248 HOH HOH . I 5 HOH A 164 1164 79 HOH HOH . I 5 HOH A 165 1165 189 HOH HOH . I 5 HOH A 166 1166 222 HOH HOH . I 5 HOH A 167 1167 164 HOH HOH . I 5 HOH A 168 1168 226 HOH HOH . I 5 HOH A 169 1169 175 HOH HOH . I 5 HOH A 170 1170 125 HOH HOH . I 5 HOH A 171 1171 236 HOH HOH . I 5 HOH A 172 1172 118 HOH HOH . I 5 HOH A 173 1173 114 HOH HOH . I 5 HOH A 174 1174 225 HOH HOH . I 5 HOH A 175 1175 64 HOH HOH . I 5 HOH A 176 1176 213 HOH HOH . I 5 HOH A 177 1177 200 HOH HOH . I 5 HOH A 178 1178 207 HOH HOH . I 5 HOH A 179 1179 135 HOH HOH . I 5 HOH A 180 1180 216 HOH HOH . I 5 HOH A 181 1181 117 HOH HOH . I 5 HOH A 182 1182 208 HOH HOH . I 5 HOH A 183 1183 111 HOH HOH . I 5 HOH A 184 1184 123 HOH HOH . I 5 HOH A 185 1185 144 HOH HOH . I 5 HOH A 186 1186 100 HOH HOH . I 5 HOH A 187 1187 206 HOH HOH . I 5 HOH A 188 1188 219 HOH HOH . I 5 HOH A 189 1189 110 HOH HOH . I 5 HOH A 190 1190 146 HOH HOH . I 5 HOH A 191 1191 245 HOH HOH . I 5 HOH A 192 1192 142 HOH HOH . I 5 HOH A 193 1193 108 HOH HOH . I 5 HOH A 194 1194 181 HOH HOH . I 5 HOH A 195 1195 61 HOH HOH . I 5 HOH A 196 1196 235 HOH HOH . I 5 HOH A 197 1197 250 HOH HOH . I 5 HOH A 198 1198 205 HOH HOH . I 5 HOH A 199 1199 224 HOH HOH . I 5 HOH A 200 1200 202 HOH HOH . I 5 HOH A 201 1201 161 HOH HOH . I 5 HOH A 202 1202 91 HOH HOH . I 5 HOH A 203 1203 230 HOH HOH . I 5 HOH A 204 1204 128 HOH HOH . I 5 HOH A 205 1205 252 HOH HOH . I 5 HOH A 206 1206 40 HOH HOH . I 5 HOH A 207 1207 253 HOH HOH . I 5 HOH A 208 1208 86 HOH HOH . I 5 HOH A 209 1209 160 HOH HOH . I 5 HOH A 210 1210 228 HOH HOH . I 5 HOH A 211 1211 172 HOH HOH . I 5 HOH A 212 1212 199 HOH HOH . I 5 HOH A 213 1213 227 HOH HOH . I 5 HOH A 214 1214 239 HOH HOH . I 5 HOH A 215 1215 197 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.911 _atom_site.Cartn_y 33.659 _atom_site.Cartn_z -6.39 _atom_site.occupancy 0.76 _atom_site.B_iso_or_equiv 20.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #