data_7NQ9
#
_model_server_result.job_id            G-WLkfqhWBJQjMB97Otn6A 
_model_server_result.datetime_utc      '2024-10-20 12:34:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7NQ9 
#
_exptl.entry_id    7NQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.388 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-benzyl-N4-((1r,3r)-3-hydroxycyclobutyl)-N2-methylpyridine-2,4-dicarboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NQ9 
_cell.length_a            71.759 
_cell.length_b            52.443 
_cell.length_c            32.07 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H21 N3 O3' 
_chem_comp.formula_weight    339.388 
_chem_comp.id                UMB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-benzyl-N4-((1r,3r)-3-hydroxycyclobutyl)-N2-methylpyridine-2,4-dicarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ~{N}2-methyl-~{N}4-(3-oxidanylcyclobutyl)-6-(phenylmethyl)pyridine-2,4-dicarboxamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N UMB sing 367 n n 
O C1 UMB doub 368 n n 
N C1 UMB sing 369 n n 
C1 C2 UMB sing 370 n n 
C2 C3 UMB doub 371 n y 
C2 N1 UMB sing 372 n y 
C3 C4 UMB sing 373 n y 
N1 C6 UMB doub 374 n y 
C4 C14 UMB sing 375 n n 
C4 C5 UMB doub 376 n y 
N2 C14 UMB sing 377 n n 
N2 C15 UMB sing 378 n n 
C18 C15 UMB sing 379 n n 
C18 C17 UMB sing 380 n n 
C6 C5 UMB sing 381 n y 
C6 C7 UMB sing 382 n n 
C14 O1 UMB doub 383 n n 
C15 C16 UMB sing 384 n n 
C7 C8 UMB sing 385 n n 
C17 O2 UMB sing 386 n n 
C17 C16 UMB sing 387 n n 
C9 C8 UMB doub 388 n y 
C9 C10 UMB sing 389 n y 
C8 C13 UMB sing 390 n y 
C10 C11 UMB doub 391 n y 
C13 C12 UMB doub 392 n y 
C11 C12 UMB sing 393 n y 
C5 H1 UMB sing 394 n n 
C7 H2 UMB sing 395 n n 
C7 H3 UMB sing 396 n n 
C10 H4 UMB sing 397 n n 
C13 H5 UMB sing 398 n n 
C15 H6 UMB sing 399 n n 
C17 H7 UMB sing 400 n n 
N2 H8 UMB sing 401 n n 
C18 H9 UMB sing 402 n n 
C18 H10 UMB sing 403 n n 
O2 H11 UMB sing 404 n n 
C16 H12 UMB sing 405 n n 
C16 H13 UMB sing 406 n n 
C3 H14 UMB sing 407 n n 
N H15 UMB sing 408 n n 
C H16 UMB sing 409 n n 
C H17 UMB sing 410 n n 
C H18 UMB sing 411 n n 
C12 H19 UMB sing 412 n n 
C11 H20 UMB sing 413 n n 
C9 H21 UMB sing 414 n n 
#
_atom_sites.entry_id                     7NQ9 
_atom_sites.fract_transf_matrix[1][1]    0.013936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UMB AAA 1 501 4000 UMB LIG . 
C 3 EDO AAA 1 502 1 EDO EDO . 
D 3 EDO AAA 1 503 2 EDO EDO . 
E 3 EDO AAA 1 504 3 EDO EDO . 
F 3 EDO AAA 1 505 4 EDO EDO . 
G 3 EDO AAA 1 506 5 EDO EDO . 
H 4 HOH AAA 1 601 58 HOH HOH . 
H 4 HOH AAA 2 602 97 HOH HOH . 
H 4 HOH AAA 3 603 124 HOH HOH . 
H 4 HOH AAA 4 604 61 HOH HOH . 
H 4 HOH AAA 5 605 136 HOH HOH . 
H 4 HOH AAA 6 606 126 HOH HOH . 
H 4 HOH AAA 7 607 135 HOH HOH . 
H 4 HOH AAA 8 608 3 HOH HOH . 
H 4 HOH AAA 9 609 29 HOH HOH . 
H 4 HOH AAA 10 610 4 HOH HOH . 
H 4 HOH AAA 11 611 129 HOH HOH . 
H 4 HOH AAA 12 612 102 HOH HOH . 
H 4 HOH AAA 13 613 21 HOH HOH . 
H 4 HOH AAA 14 614 125 HOH HOH . 
H 4 HOH AAA 15 615 46 HOH HOH . 
H 4 HOH AAA 16 616 62 HOH HOH . 
H 4 HOH AAA 17 617 9 HOH HOH . 
H 4 HOH AAA 18 618 150 HOH HOH . 
H 4 HOH AAA 19 619 147 HOH HOH . 
H 4 HOH AAA 20 620 32 HOH HOH . 
H 4 HOH AAA 21 621 120 HOH HOH . 
H 4 HOH AAA 22 622 39 HOH HOH . 
H 4 HOH AAA 23 623 6 HOH HOH . 
H 4 HOH AAA 24 624 34 HOH HOH . 
H 4 HOH AAA 25 625 64 HOH HOH . 
H 4 HOH AAA 26 626 132 HOH HOH . 
H 4 HOH AAA 27 627 47 HOH HOH . 
H 4 HOH AAA 28 628 98 HOH HOH . 
H 4 HOH AAA 29 629 40 HOH HOH . 
H 4 HOH AAA 30 630 12 HOH HOH . 
H 4 HOH AAA 31 631 31 HOH HOH . 
H 4 HOH AAA 32 632 157 HOH HOH . 
H 4 HOH AAA 33 633 68 HOH HOH . 
H 4 HOH AAA 34 634 85 HOH HOH . 
H 4 HOH AAA 35 635 66 HOH HOH . 
H 4 HOH AAA 36 636 87 HOH HOH . 
H 4 HOH AAA 37 637 14 HOH HOH . 
H 4 HOH AAA 38 638 149 HOH HOH . 
H 4 HOH AAA 39 639 20 HOH HOH . 
H 4 HOH AAA 40 640 131 HOH HOH . 
H 4 HOH AAA 41 641 37 HOH HOH . 
H 4 HOH AAA 42 642 8 HOH HOH . 
H 4 HOH AAA 43 643 101 HOH HOH . 
H 4 HOH AAA 44 644 5 HOH HOH . 
H 4 HOH AAA 45 645 18 HOH HOH . 
H 4 HOH AAA 46 646 23 HOH HOH . 
H 4 HOH AAA 47 647 78 HOH HOH . 
H 4 HOH AAA 48 648 15 HOH HOH . 
H 4 HOH AAA 49 649 92 HOH HOH . 
H 4 HOH AAA 50 650 96 HOH HOH . 
H 4 HOH AAA 51 651 160 HOH HOH . 
H 4 HOH AAA 52 652 33 HOH HOH . 
H 4 HOH AAA 53 653 7 HOH HOH . 
H 4 HOH AAA 54 654 143 HOH HOH . 
H 4 HOH AAA 55 655 112 HOH HOH . 
H 4 HOH AAA 56 656 2 HOH HOH . 
H 4 HOH AAA 57 657 76 HOH HOH . 
H 4 HOH AAA 58 658 42 HOH HOH . 
H 4 HOH AAA 59 659 71 HOH HOH . 
H 4 HOH AAA 60 660 73 HOH HOH . 
H 4 HOH AAA 61 661 17 HOH HOH . 
H 4 HOH AAA 62 662 119 HOH HOH . 
H 4 HOH AAA 63 663 53 HOH HOH . 
H 4 HOH AAA 64 664 35 HOH HOH . 
H 4 HOH AAA 65 665 13 HOH HOH . 
H 4 HOH AAA 66 666 49 HOH HOH . 
H 4 HOH AAA 67 667 11 HOH HOH . 
H 4 HOH AAA 68 668 106 HOH HOH . 
H 4 HOH AAA 69 669 28 HOH HOH . 
H 4 HOH AAA 70 670 81 HOH HOH . 
H 4 HOH AAA 71 671 54 HOH HOH . 
H 4 HOH AAA 72 672 10 HOH HOH . 
H 4 HOH AAA 73 673 56 HOH HOH . 
H 4 HOH AAA 74 674 140 HOH HOH . 
H 4 HOH AAA 75 675 74 HOH HOH . 
H 4 HOH AAA 76 676 67 HOH HOH . 
H 4 HOH AAA 77 677 60 HOH HOH . 
H 4 HOH AAA 78 678 22 HOH HOH . 
H 4 HOH AAA 79 679 19 HOH HOH . 
H 4 HOH AAA 80 680 63 HOH HOH . 
H 4 HOH AAA 81 681 83 HOH HOH . 
H 4 HOH AAA 82 682 26 HOH HOH . 
H 4 HOH AAA 83 683 16 HOH HOH . 
H 4 HOH AAA 84 684 158 HOH HOH . 
H 4 HOH AAA 85 685 25 HOH HOH . 
H 4 HOH AAA 86 686 137 HOH HOH . 
H 4 HOH AAA 87 687 77 HOH HOH . 
H 4 HOH AAA 88 688 27 HOH HOH . 
H 4 HOH AAA 89 689 45 HOH HOH . 
H 4 HOH AAA 90 690 1 HOH HOH . 
H 4 HOH AAA 91 691 104 HOH HOH . 
H 4 HOH AAA 92 692 41 HOH HOH . 
H 4 HOH AAA 93 693 30 HOH HOH . 
H 4 HOH AAA 94 694 84 HOH HOH . 
H 4 HOH AAA 95 695 59 HOH HOH . 
H 4 HOH AAA 96 696 44 HOH HOH . 
H 4 HOH AAA 97 697 130 HOH HOH . 
H 4 HOH AAA 98 698 43 HOH HOH . 
H 4 HOH AAA 99 699 117 HOH HOH . 
H 4 HOH AAA 100 700 139 HOH HOH . 
H 4 HOH AAA 101 701 162 HOH HOH . 
H 4 HOH AAA 102 702 69 HOH HOH . 
H 4 HOH AAA 103 703 142 HOH HOH . 
H 4 HOH AAA 104 704 51 HOH HOH . 
H 4 HOH AAA 105 705 55 HOH HOH . 
H 4 HOH AAA 106 706 128 HOH HOH . 
H 4 HOH AAA 107 707 161 HOH HOH . 
H 4 HOH AAA 108 708 113 HOH HOH . 
H 4 HOH AAA 109 709 152 HOH HOH . 
H 4 HOH AAA 110 710 110 HOH HOH . 
H 4 HOH AAA 111 711 94 HOH HOH . 
H 4 HOH AAA 112 712 127 HOH HOH . 
H 4 HOH AAA 113 713 75 HOH HOH . 
H 4 HOH AAA 114 714 118 HOH HOH . 
H 4 HOH AAA 115 715 145 HOH HOH . 
H 4 HOH AAA 116 716 176 HOH HOH . 
H 4 HOH AAA 117 717 111 HOH HOH . 
H 4 HOH AAA 118 718 93 HOH HOH . 
H 4 HOH AAA 119 719 167 HOH HOH . 
H 4 HOH AAA 120 720 122 HOH HOH . 
H 4 HOH AAA 121 721 173 HOH HOH . 
H 4 HOH AAA 122 722 36 HOH HOH . 
H 4 HOH AAA 123 723 163 HOH HOH . 
H 4 HOH AAA 124 724 148 HOH HOH . 
H 4 HOH AAA 125 725 48 HOH HOH . 
H 4 HOH AAA 126 726 175 HOH HOH . 
H 4 HOH AAA 127 727 100 HOH HOH . 
H 4 HOH AAA 128 728 155 HOH HOH . 
H 4 HOH AAA 129 729 108 HOH HOH . 
H 4 HOH AAA 130 730 65 HOH HOH . 
H 4 HOH AAA 131 731 91 HOH HOH . 
H 4 HOH AAA 132 732 99 HOH HOH . 
H 4 HOH AAA 133 733 70 HOH HOH . 
H 4 HOH AAA 134 734 57 HOH HOH . 
H 4 HOH AAA 135 735 166 HOH HOH . 
H 4 HOH AAA 136 736 133 HOH HOH . 
H 4 HOH AAA 137 737 174 HOH HOH . 
H 4 HOH AAA 138 738 114 HOH HOH . 
H 4 HOH AAA 139 739 109 HOH HOH . 
H 4 HOH AAA 140 740 88 HOH HOH . 
H 4 HOH AAA 141 741 90 HOH HOH . 
H 4 HOH AAA 142 742 156 HOH HOH . 
H 4 HOH AAA 143 743 151 HOH HOH . 
H 4 HOH AAA 144 744 159 HOH HOH . 
H 4 HOH AAA 145 745 72 HOH HOH . 
H 4 HOH AAA 146 746 105 HOH HOH . 
H 4 HOH AAA 147 747 170 HOH HOH . 
H 4 HOH AAA 148 748 141 HOH HOH . 
H 4 HOH AAA 149 749 86 HOH HOH . 
H 4 HOH AAA 150 750 38 HOH HOH . 
H 4 HOH AAA 151 751 82 HOH HOH . 
H 4 HOH AAA 152 752 103 HOH HOH . 
H 4 HOH AAA 153 753 80 HOH HOH . 
H 4 HOH AAA 154 754 79 HOH HOH . 
H 4 HOH AAA 155 755 123 HOH HOH . 
H 4 HOH AAA 156 756 95 HOH HOH . 
H 4 HOH AAA 157 757 115 HOH HOH . 
H 4 HOH AAA 158 758 134 HOH HOH . 
H 4 HOH AAA 159 759 89 HOH HOH . 
H 4 HOH AAA 160 760 121 HOH HOH . 
H 4 HOH AAA 161 761 50 HOH HOH . 
H 4 HOH AAA 162 762 146 HOH HOH . 
H 4 HOH AAA 163 763 172 HOH HOH . 
H 4 HOH AAA 164 764 154 HOH HOH . 
H 4 HOH AAA 165 765 168 HOH HOH . 
H 4 HOH AAA 166 766 164 HOH HOH . 
H 4 HOH AAA 167 767 144 HOH HOH . 
H 4 HOH AAA 168 768 107 HOH HOH . 
H 4 HOH AAA 169 769 116 HOH HOH . 
H 4 HOH AAA 170 770 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMB . . . B 2 41.355 17.403 8.535 1 16.91 ? N1 UMB 501 AAA 1 
HETATM 2 C C4 UMB . . . B 2 44.049 17.476 9.279 1 17.07 ? C4 UMB 501 AAA 1 
HETATM 3 C C5 UMB . . . B 2 43.106 18.271 9.917 1 16.61 ? C5 UMB 501 AAA 1 
HETATM 4 C C6 UMB . . . B 2 41.782 18.212 9.523 1 17.28 ? C6 UMB 501 AAA 1 
HETATM 5 C C7 UMB . . . B 2 40.723 19.04 10.209 1 18.09 ? C7 UMB 501 AAA 1 
HETATM 6 C C8 UMB . . . B 2 40.196 18.313 11.424 1 19.17 ? C8 UMB 501 AAA 1 
HETATM 7 C C10 UMB . . . B 2 38.743 16.661 12.401 1 19.61 ? C10 UMB 501 AAA 1 
HETATM 8 C C13 UMB . . . B 2 40.73 18.549 12.681 1 20.57 ? C13 UMB 501 AAA 1 
HETATM 9 C C15 UMB . . . B 2 47.687 16.573 9.903 1 21.31 ? C15 UMB 501 AAA 1 
HETATM 10 C C17 UMB . . . B 2 49.119 15.323 10.916 1 24.56 ? C17 UMB 501 AAA 1 
HETATM 11 O O1 UMB . . . B 2 45.849 18.595 10.353 1 19.5 ? O1 UMB 501 AAA 1 
HETATM 12 C C14 UMB . . . B 2 45.469 17.597 9.739 1 18.97 ? C14 UMB 501 AAA 1 
HETATM 13 N N2 UMB . . . B 2 46.292 16.576 9.474 1 19.29 ? N2 UMB 501 AAA 1 
HETATM 14 C C18 UMB . . . B 2 48.57 15.39 9.483 1 22.73 ? C18 UMB 501 AAA 1 
HETATM 15 O O2 UMB . . . B 2 50.45 15.766 11.18 1 26.95 ? O2 UMB 501 AAA 1 
HETATM 16 C C16 UMB . . . B 2 47.936 16.187 11.366 1 22.82 ? C16 UMB 501 AAA 1 
HETATM 17 C C3 UMB . . . B 2 43.625 16.634 8.254 1 16.38 ? C3 UMB 501 AAA 1 
HETATM 18 C C2 UMB . . . B 2 42.267 16.629 7.922 1 15.88 ? C2 UMB 501 AAA 1 
HETATM 19 C C1 UMB . . . B 2 41.771 15.713 6.837 1 14.76 ? C1 UMB 501 AAA 1 
HETATM 20 O O UMB . . . B 2 42.497 14.844 6.352 1 14.8 ? O UMB 501 AAA 1 
HETATM 21 N N UMB . . . B 2 40.509 15.906 6.46 1 14.24 ? N UMB 501 AAA 1 
HETATM 22 C C UMB . . . B 2 39.814 14.988 5.575 1 14.34 ? C UMB 501 AAA 1 
HETATM 23 C C12 UMB . . . B 2 40.28 17.844 13.785 1 22.04 ? C12 UMB 501 AAA 1 
HETATM 24 C C11 UMB . . . B 2 39.288 16.897 13.645 1 20.3 ? C11 UMB 501 AAA 1 
HETATM 25 C C9 UMB . . . B 2 39.194 17.364 11.299 1 19.08 ? C9 UMB 501 AAA 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           25 
#