data_7NQR # _model_server_result.job_id bkhLnDTUYtnl-5GZD1MMAw _model_server_result.datetime_utc '2024-11-30 04:06:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":507}' # _entry.id 7NQR # _exptl.entry_id 7NQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NQR _cell.length_a 79.97 _cell.length_b 102.56 _cell.length_c 103.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,V 1 1 B,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 N N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 7NQR _atom_sites.fract_transf_matrix[1][1] 0.012505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 504 GOL GOL . D 3 PG6 A 1 502 1001 PG6 PG6 . E 4 AN2 A 1 503 1301 AN2 AN2 . F 2 GOL A 1 504 1401 GOL GOL . G 2 GOL A 1 505 1501 GOL GOL . H 2 GOL A 1 506 1601 GOL GOL . I 2 GOL A 1 507 1701 GOL GOL . J 2 GOL A 1 508 1801 GOL GOL . K 5 PO4 A 1 509 1 PO4 PO4 . L 6 CL A 1 510 1 CL CL . M 6 CL A 1 511 2 CL CL . N 2 GOL B 1 501 503 GOL GOL . O 7 SYQ B 1 502 801 SYQ LIG . P 4 AN2 B 1 503 1101 AN2 AN2 . Q 2 GOL B 1 504 1201 GOL GOL . R 2 GOL B 1 505 1401 GOL GOL . S 2 GOL B 1 506 1501 GOL GOL . T 2 GOL B 1 507 1601 GOL GOL . U 5 PO4 B 1 508 2 PO4 PO4 . V 8 HOH A 1 601 270 HOH HOH . V 8 HOH A 2 602 303 HOH HOH . V 8 HOH A 3 603 108 HOH HOH . V 8 HOH A 4 604 290 HOH HOH . V 8 HOH A 5 605 651 HOH HOH . V 8 HOH A 6 606 76 HOH HOH . V 8 HOH A 7 607 250 HOH HOH . V 8 HOH A 8 608 601 HOH HOH . V 8 HOH A 9 609 175 HOH HOH . V 8 HOH A 10 610 278 HOH HOH . V 8 HOH A 11 611 633 HOH HOH . V 8 HOH A 12 612 608 HOH HOH . V 8 HOH A 13 613 252 HOH HOH . V 8 HOH A 14 614 674 HOH HOH . V 8 HOH A 15 615 634 HOH HOH . V 8 HOH A 16 616 255 HOH HOH . V 8 HOH A 17 617 680 HOH HOH . V 8 HOH A 18 618 212 HOH HOH . V 8 HOH A 19 619 624 HOH HOH . V 8 HOH A 20 620 124 HOH HOH . V 8 HOH A 21 621 611 HOH HOH . V 8 HOH A 22 622 687 HOH HOH . V 8 HOH A 23 623 145 HOH HOH . V 8 HOH A 24 624 605 HOH HOH . V 8 HOH A 25 625 663 HOH HOH . V 8 HOH A 26 626 272 HOH HOH . V 8 HOH A 27 627 296 HOH HOH . V 8 HOH A 28 628 218 HOH HOH . V 8 HOH A 29 629 679 HOH HOH . V 8 HOH A 30 630 200 HOH HOH . V 8 HOH A 31 631 9 HOH HOH . V 8 HOH A 32 632 636 HOH HOH . V 8 HOH A 33 633 658 HOH HOH . V 8 HOH A 34 634 135 HOH HOH . V 8 HOH A 35 635 121 HOH HOH . V 8 HOH A 36 636 612 HOH HOH . V 8 HOH A 37 637 234 HOH HOH . V 8 HOH A 38 638 642 HOH HOH . V 8 HOH A 39 639 708 HOH HOH . V 8 HOH A 40 640 114 HOH HOH . V 8 HOH A 41 641 671 HOH HOH . V 8 HOH A 42 642 695 HOH HOH . V 8 HOH A 43 643 707 HOH HOH . V 8 HOH A 44 644 265 HOH HOH . V 8 HOH A 45 645 163 HOH HOH . V 8 HOH A 46 646 668 HOH HOH . V 8 HOH A 47 647 664 HOH HOH . V 8 HOH A 48 648 292 HOH HOH . V 8 HOH A 49 649 701 HOH HOH . V 8 HOH A 50 650 172 HOH HOH . V 8 HOH A 51 651 706 HOH HOH . V 8 HOH A 52 652 638 HOH HOH . V 8 HOH A 53 653 615 HOH HOH . V 8 HOH A 54 654 111 HOH HOH . V 8 HOH A 55 655 712 HOH HOH . V 8 HOH A 56 656 728 HOH HOH . V 8 HOH A 57 657 243 HOH HOH . V 8 HOH A 58 658 640 HOH HOH . V 8 HOH A 59 659 133 HOH HOH . V 8 HOH A 60 660 141 HOH HOH . V 8 HOH A 61 661 291 HOH HOH . V 8 HOH A 62 662 179 HOH HOH . V 8 HOH A 63 663 720 HOH HOH . V 8 HOH A 64 664 692 HOH HOH . V 8 HOH A 65 665 648 HOH HOH . V 8 HOH A 66 666 625 HOH HOH . V 8 HOH A 67 667 157 HOH HOH . V 8 HOH A 68 668 653 HOH HOH . V 8 HOH A 69 669 675 HOH HOH . V 8 HOH A 70 670 656 HOH HOH . V 8 HOH A 71 671 289 HOH HOH . V 8 HOH A 72 672 715 HOH HOH . V 8 HOH A 73 673 203 HOH HOH . V 8 HOH A 74 674 43 HOH HOH . V 8 HOH A 75 675 279 HOH HOH . V 8 HOH A 76 676 283 HOH HOH . V 8 HOH A 77 677 21 HOH HOH . V 8 HOH A 78 678 699 HOH HOH . V 8 HOH A 79 679 722 HOH HOH . V 8 HOH A 80 680 165 HOH HOH . V 8 HOH A 81 681 689 HOH HOH . V 8 HOH A 82 682 160 HOH HOH . V 8 HOH A 83 683 734 HOH HOH . V 8 HOH A 84 684 717 HOH HOH . V 8 HOH A 85 685 686 HOH HOH . V 8 HOH A 86 686 294 HOH HOH . V 8 HOH A 87 687 13 HOH HOH . V 8 HOH A 88 688 233 HOH HOH . V 8 HOH A 89 689 206 HOH HOH . V 8 HOH A 90 690 659 HOH HOH . V 8 HOH A 91 691 93 HOH HOH . V 8 HOH A 92 692 222 HOH HOH . V 8 HOH A 93 693 748 HOH HOH . V 8 HOH A 94 694 235 HOH HOH . V 8 HOH A 95 695 770 HOH HOH . V 8 HOH A 96 696 302 HOH HOH . V 8 HOH A 97 697 166 HOH HOH . V 8 HOH A 98 698 788 HOH HOH . V 8 HOH A 99 699 726 HOH HOH . V 8 HOH A 100 700 753 HOH HOH . V 8 HOH A 101 701 264 HOH HOH . V 8 HOH A 102 702 768 HOH HOH . V 8 HOH A 103 703 42 HOH HOH . V 8 HOH A 104 704 752 HOH HOH . V 8 HOH A 105 705 227 HOH HOH . V 8 HOH A 106 706 273 HOH HOH . V 8 HOH A 107 707 305 HOH HOH . V 8 HOH A 108 708 767 HOH HOH . V 8 HOH A 109 709 759 HOH HOH . V 8 HOH A 110 710 741 HOH HOH . V 8 HOH A 111 711 298 HOH HOH . V 8 HOH A 112 712 123 HOH HOH . V 8 HOH A 113 713 785 HOH HOH . V 8 HOH A 114 714 204 HOH HOH . V 8 HOH A 115 715 267 HOH HOH . V 8 HOH A 116 716 760 HOH HOH . V 8 HOH A 117 717 288 HOH HOH . V 8 HOH A 118 718 776 HOH HOH . V 8 HOH A 119 719 269 HOH HOH . V 8 HOH A 120 720 207 HOH HOH . V 8 HOH A 121 721 286 HOH HOH . V 8 HOH A 122 722 70 HOH HOH . V 8 HOH A 123 723 778 HOH HOH . V 8 HOH A 124 724 51 HOH HOH . V 8 HOH A 125 725 775 HOH HOH . V 8 HOH A 126 726 210 HOH HOH . V 8 HOH A 127 727 156 HOH HOH . V 8 HOH A 128 728 27 HOH HOH . V 8 HOH A 129 729 110 HOH HOH . V 8 HOH A 130 730 729 HOH HOH . V 8 HOH A 131 731 790 HOH HOH . V 8 HOH A 132 732 263 HOH HOH . V 8 HOH A 133 733 782 HOH HOH . V 8 HOH A 134 734 721 HOH HOH . V 8 HOH A 135 735 97 HOH HOH . V 8 HOH A 136 736 713 HOH HOH . V 8 HOH A 137 737 257 HOH HOH . V 8 HOH A 138 738 253 HOH HOH . V 8 HOH A 139 739 167 HOH HOH . V 8 HOH A 140 740 789 HOH HOH . V 8 HOH A 141 741 260 HOH HOH . V 8 HOH A 142 742 151 HOH HOH . V 8 HOH A 143 743 799 HOH HOH . V 8 HOH A 144 744 306 HOH HOH . V 8 HOH A 145 745 246 HOH HOH . V 8 HOH A 146 746 214 HOH HOH . V 8 HOH A 147 747 213 HOH HOH . W 8 HOH B 1 601 183 HOH HOH . W 8 HOH B 2 602 604 HOH HOH . W 8 HOH B 3 603 304 HOH HOH . W 8 HOH B 4 604 300 HOH HOH . W 8 HOH B 5 605 299 HOH HOH . W 8 HOH B 6 606 259 HOH HOH . W 8 HOH B 7 607 180 HOH HOH . W 8 HOH B 8 608 159 HOH HOH . W 8 HOH B 9 609 168 HOH HOH . W 8 HOH B 10 610 281 HOH HOH . W 8 HOH B 11 611 116 HOH HOH . W 8 HOH B 12 612 173 HOH HOH . W 8 HOH B 13 613 293 HOH HOH . W 8 HOH B 14 614 155 HOH HOH . W 8 HOH B 15 615 251 HOH HOH . W 8 HOH B 16 616 643 HOH HOH . W 8 HOH B 17 617 620 HOH HOH . W 8 HOH B 18 618 274 HOH HOH . W 8 HOH B 19 619 277 HOH HOH . W 8 HOH B 20 620 181 HOH HOH . W 8 HOH B 21 621 164 HOH HOH . W 8 HOH B 22 622 630 HOH HOH . W 8 HOH B 23 623 645 HOH HOH . W 8 HOH B 24 624 682 HOH HOH . W 8 HOH B 25 625 642 HOH HOH . W 8 HOH B 26 626 634 HOH HOH . W 8 HOH B 27 627 623 HOH HOH . W 8 HOH B 28 628 301 HOH HOH . W 8 HOH B 29 629 639 HOH HOH . W 8 HOH B 30 630 271 HOH HOH . W 8 HOH B 31 631 285 HOH HOH . W 8 HOH B 32 632 275 HOH HOH . W 8 HOH B 33 633 282 HOH HOH . W 8 HOH B 34 634 715 HOH HOH . W 8 HOH B 35 635 702 HOH HOH . W 8 HOH B 36 636 657 HOH HOH . W 8 HOH B 37 637 307 HOH HOH . W 8 HOH B 38 638 280 HOH HOH . W 8 HOH B 39 639 120 HOH HOH . W 8 HOH B 40 640 656 HOH HOH . W 8 HOH B 41 641 7 HOH HOH . W 8 HOH B 42 642 284 HOH HOH . W 8 HOH B 43 643 276 HOH HOH . W 8 HOH B 44 644 136 HOH HOH . W 8 HOH B 45 645 161 HOH HOH . W 8 HOH B 46 646 683 HOH HOH . W 8 HOH B 47 647 202 HOH HOH . W 8 HOH B 48 648 101 HOH HOH . W 8 HOH B 49 649 703 HOH HOH . W 8 HOH B 50 650 295 HOH HOH . W 8 HOH B 51 651 681 HOH HOH . W 8 HOH B 52 652 127 HOH HOH . W 8 HOH B 53 653 189 HOH HOH . W 8 HOH B 54 654 678 HOH HOH . W 8 HOH B 55 655 117 HOH HOH . W 8 HOH B 56 656 148 HOH HOH . W 8 HOH B 57 657 677 HOH HOH . W 8 HOH B 58 658 192 HOH HOH . W 8 HOH B 59 659 74 HOH HOH . W 8 HOH B 60 660 49 HOH HOH . W 8 HOH B 61 661 297 HOH HOH . W 8 HOH B 62 662 174 HOH HOH . W 8 HOH B 63 663 660 HOH HOH . W 8 HOH B 64 664 170 HOH HOH . W 8 HOH B 65 665 803 HOH HOH . W 8 HOH B 66 666 734 HOH HOH . W 8 HOH B 67 667 187 HOH HOH . W 8 HOH B 68 668 46 HOH HOH . W 8 HOH B 69 669 287 HOH HOH . W 8 HOH B 70 670 219 HOH HOH . W 8 HOH B 71 671 666 HOH HOH . W 8 HOH B 72 672 1 HOH HOH . W 8 HOH B 73 673 609 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . T 2 53.583 75.831 24.081 1 102.27 ? C1 GOL 507 B 1 HETATM 2 O O1 GOL . . . T 2 54.287 74.618 24.327 1 102.03 ? O1 GOL 507 B 1 HETATM 3 C C2 GOL . . . T 2 52.099 75.577 23.95 1 102.45 ? C2 GOL 507 B 1 HETATM 4 O O2 GOL . . . T 2 51.582 75.094 25.198 1 102.75 ? O2 GOL 507 B 1 HETATM 5 C C3 GOL . . . T 2 51.331 76.81 23.525 1 102.23 ? C3 GOL 507 B 1 HETATM 6 O O3 GOL . . . T 2 51.581 77.16 22.165 1 101.76 ? O3 GOL 507 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #