data_7NQS
#
_model_server_result.job_id            xEn2LBhUuarf5EQJwEgzTw 
_model_server_result.datetime_utc      '2024-11-15 02:52:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nqs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    7NQS 
#
_exptl.entry_id    7NQS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.216 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMP PHOSPHORAMIDATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NQS 
_cell.length_a            79.88 
_cell.length_b            102.87 
_cell.length_c            103.76 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NQS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,U 1 1 
B,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C10 H16 N6 O9 P2' 
_chem_comp.formula_weight    426.216 
_chem_comp.id                AN2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMP PHOSPHORAMIDATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB AN2 sing 13 n n 
N3B H3B1 AN2 sing 14 n n 
N3B H3B2 AN2 sing 15 n n 
PB O2B AN2 sing 16 n n 
PB O1B AN2 doub 17 n n 
PB O3A AN2 sing 18 n n 
O2B HO2B AN2 sing 19 n n 
O3A PA AN2 sing 20 n n 
PA O1A AN2 doub 21 n n 
PA O2A AN2 sing 22 n n 
PA O5' AN2 sing 23 n n 
O2A HO2A AN2 sing 24 n n 
O5' C5' AN2 sing 25 n n 
C5' C4' AN2 sing 26 n n 
C5' "H5'1" AN2 sing 27 n n 
C5' "H5'2" AN2 sing 28 n n 
C4' O4' AN2 sing 29 n n 
C4' C3' AN2 sing 30 n n 
C4' H4' AN2 sing 31 n n 
O4' C1' AN2 sing 32 n n 
C3' O3' AN2 sing 33 n n 
C3' C2' AN2 sing 34 n n 
C3' H3' AN2 sing 35 n n 
O3' HA AN2 sing 36 n n 
C2' O2' AN2 sing 37 n n 
C2' C1' AN2 sing 38 n n 
C2' H2' AN2 sing 39 n n 
O2' HB AN2 sing 40 n n 
C1' N9 AN2 sing 41 n n 
C1' H1' AN2 sing 42 n n 
N9 C8 AN2 sing 43 n y 
N9 C4 AN2 sing 44 n y 
C8 N7 AN2 doub 45 n y 
C8 H8 AN2 sing 46 n n 
N7 C5 AN2 sing 47 n y 
C5 C4 AN2 doub 48 n y 
C5 C6 AN2 sing 49 n y 
C4 N3 AN2 sing 50 n y 
N3 C2 AN2 doub 51 n y 
C2 N1 AN2 sing 52 n y 
C2 H2 AN2 sing 53 n n 
N1 C6 AN2 doub 54 n y 
C6 N6 AN2 sing 55 n n 
N6 H6N1 AN2 sing 56 n n 
N6 H6N2 AN2 sing 57 n n 
#
_atom_sites.entry_id                     7NQS 
_atom_sites.fract_transf_matrix[1][1]    0.012519 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009721 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009638 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AN2 A 1 501 502 AN2 AN2 . 
D 3 GOL A 1 502 504 GOL GOL . 
E 3 GOL A 1 503 505 GOL GOL . 
F 3 GOL A 1 504 507 GOL GOL . 
G 3 GOL A 1 505 901 GOL GOL . 
H 4 PG4 A 1 506 1001 PG4 PG4 . 
I 3 GOL A 1 507 1101 GOL GOL . 
J 3 GOL A 1 508 1201 GOL GOL . 
K 3 GOL A 1 509 1301 GOL GOL . 
L 5 PO4 A 1 510 1 PO4 PO4 . 
M 2 AN2 B 1 501 502 AN2 AN2 . 
N 3 GOL B 1 502 503 GOL GOL . 
O 3 GOL B 1 503 504 GOL GOL . 
P 6 JH1 B 1 504 801 JH1 LIG . 
Q 3 GOL B 1 505 901 GOL GOL . 
R 3 GOL B 1 506 1001 GOL GOL . 
S 3 GOL B 1 507 1101 GOL GOL . 
T 5 PO4 B 1 508 2 PO4 PO4 . 
U 7 HOH A 1 601 687 HOH HOH . 
U 7 HOH A 2 602 674 HOH HOH . 
U 7 HOH A 3 603 2 HOH HOH . 
U 7 HOH A 4 604 607 HOH HOH . 
U 7 HOH A 5 605 633 HOH HOH . 
U 7 HOH A 6 606 608 HOH HOH . 
U 7 HOH A 7 607 8 HOH HOH . 
U 7 HOH A 8 608 616 HOH HOH . 
U 7 HOH A 9 609 679 HOH HOH . 
U 7 HOH A 10 610 80 HOH HOH . 
U 7 HOH A 11 611 625 HOH HOH . 
U 7 HOH A 12 612 109 HOH HOH . 
U 7 HOH A 13 613 636 HOH HOH . 
U 7 HOH A 14 614 663 HOH HOH . 
U 7 HOH A 15 615 680 HOH HOH . 
U 7 HOH A 16 616 715 HOH HOH . 
U 7 HOH A 17 617 728 HOH HOH . 
U 7 HOH A 18 618 707 HOH HOH . 
U 7 HOH A 19 619 611 HOH HOH . 
U 7 HOH A 20 620 642 HOH HOH . 
U 7 HOH A 21 621 18 HOH HOH . 
U 7 HOH A 22 622 638 HOH HOH . 
U 7 HOH A 23 623 9 HOH HOH . 
U 7 HOH A 24 624 712 HOH HOH . 
U 7 HOH A 25 625 624 HOH HOH . 
U 7 HOH A 26 626 658 HOH HOH . 
U 7 HOH A 27 627 1 HOH HOH . 
U 7 HOH A 28 628 726 HOH HOH . 
U 7 HOH A 29 629 609 HOH HOH . 
U 7 HOH A 30 630 734 HOH HOH . 
U 7 HOH A 31 631 701 HOH HOH . 
U 7 HOH A 32 632 82 HOH HOH . 
U 7 HOH A 33 633 628 HOH HOH . 
U 7 HOH A 34 634 699 HOH HOH . 
U 7 HOH A 35 635 81 HOH HOH . 
U 7 HOH A 36 636 666 HOH HOH . 
U 7 HOH A 37 637 648 HOH HOH . 
U 7 HOH A 38 638 635 HOH HOH . 
U 7 HOH A 39 639 743 HOH HOH . 
U 7 HOH A 40 640 692 HOH HOH . 
U 7 HOH A 41 641 720 HOH HOH . 
U 7 HOH A 42 642 668 HOH HOH . 
U 7 HOH A 43 643 675 HOH HOH . 
U 7 HOH A 44 644 653 HOH HOH . 
U 7 HOH A 45 645 689 HOH HOH . 
U 7 HOH A 46 646 656 HOH HOH . 
U 7 HOH A 47 647 708 HOH HOH . 
U 7 HOH A 48 648 70 HOH HOH . 
U 7 HOH A 49 649 749 HOH HOH . 
U 7 HOH A 50 650 673 HOH HOH . 
U 7 HOH A 51 651 62 HOH HOH . 
U 7 HOH A 52 652 722 HOH HOH . 
U 7 HOH A 53 653 768 HOH HOH . 
U 7 HOH A 54 654 655 HOH HOH . 
U 7 HOH A 55 655 53 HOH HOH . 
U 7 HOH A 56 656 102 HOH HOH . 
U 7 HOH A 57 657 56 HOH HOH . 
U 7 HOH A 58 658 752 HOH HOH . 
U 7 HOH A 59 659 750 HOH HOH . 
U 7 HOH A 60 660 671 HOH HOH . 
U 7 HOH A 61 661 22 HOH HOH . 
U 7 HOH A 62 662 788 HOH HOH . 
U 7 HOH A 63 663 98 HOH HOH . 
U 7 HOH A 64 664 759 HOH HOH . 
U 7 HOH A 65 665 35 HOH HOH . 
U 7 HOH A 66 666 130 HOH HOH . 
U 7 HOH A 67 667 785 HOH HOH . 
U 7 HOH A 68 668 84 HOH HOH . 
U 7 HOH A 69 669 683 HOH HOH . 
U 7 HOH A 70 670 790 HOH HOH . 
U 7 HOH A 71 671 659 HOH HOH . 
U 7 HOH A 72 672 69 HOH HOH . 
U 7 HOH A 73 673 27 HOH HOH . 
U 7 HOH A 74 674 67 HOH HOH . 
U 7 HOH A 75 675 778 HOH HOH . 
U 7 HOH A 76 676 782 HOH HOH . 
U 7 HOH A 77 677 604 HOH HOH . 
U 7 HOH A 78 678 665 HOH HOH . 
U 7 HOH A 79 679 760 HOH HOH . 
U 7 HOH A 80 680 23 HOH HOH . 
U 7 HOH A 81 681 68 HOH HOH . 
U 7 HOH A 82 682 721 HOH HOH . 
U 7 HOH A 83 683 729 HOH HOH . 
U 7 HOH A 84 684 138 HOH HOH . 
U 7 HOH A 85 685 137 HOH HOH . 
U 7 HOH A 86 686 744 HOH HOH . 
U 7 HOH A 87 687 76 HOH HOH . 
U 7 HOH A 88 688 118 HOH HOH . 
U 7 HOH A 89 689 794 HOH HOH . 
U 7 HOH A 90 690 789 HOH HOH . 
U 7 HOH A 91 691 42 HOH HOH . 
U 7 HOH A 92 692 136 HOH HOH . 
U 7 HOH A 93 693 3 HOH HOH . 
V 7 HOH B 1 601 117 HOH HOH . 
V 7 HOH B 2 602 107 HOH HOH . 
V 7 HOH B 3 603 604 HOH HOH . 
V 7 HOH B 4 604 4 HOH HOH . 
V 7 HOH B 5 605 79 HOH HOH . 
V 7 HOH B 6 606 617 HOH HOH . 
V 7 HOH B 7 607 618 HOH HOH . 
V 7 HOH B 8 608 630 HOH HOH . 
V 7 HOH B 9 609 88 HOH HOH . 
V 7 HOH B 10 610 648 HOH HOH . 
V 7 HOH B 11 611 639 HOH HOH . 
V 7 HOH B 12 612 25 HOH HOH . 
V 7 HOH B 13 613 642 HOH HOH . 
V 7 HOH B 14 614 97 HOH HOH . 
V 7 HOH B 15 615 645 HOH HOH . 
V 7 HOH B 16 616 45 HOH HOH . 
V 7 HOH B 17 617 94 HOH HOH . 
V 7 HOH B 18 618 101 HOH HOH . 
V 7 HOH B 19 619 610 HOH HOH . 
V 7 HOH B 20 620 658 HOH HOH . 
V 7 HOH B 21 621 657 HOH HOH . 
V 7 HOH B 22 622 623 HOH HOH . 
V 7 HOH B 23 623 656 HOH HOH . 
V 7 HOH B 24 624 640 HOH HOH . 
V 7 HOH B 25 625 702 HOH HOH . 
V 7 HOH B 26 626 685 HOH HOH . 
V 7 HOH B 27 627 16 HOH HOH . 
V 7 HOH B 28 628 697 HOH HOH . 
V 7 HOH B 29 629 626 HOH HOH . 
V 7 HOH B 30 630 682 HOH HOH . 
V 7 HOH B 31 631 715 HOH HOH . 
V 7 HOH B 32 632 71 HOH HOH . 
V 7 HOH B 33 633 678 HOH HOH . 
V 7 HOH B 34 634 676 HOH HOH . 
V 7 HOH B 35 635 681 HOH HOH . 
V 7 HOH B 36 636 703 HOH HOH . 
V 7 HOH B 37 637 26 HOH HOH . 
V 7 HOH B 38 638 112 HOH HOH . 
V 7 HOH B 39 639 730 HOH HOH . 
V 7 HOH B 40 640 60 HOH HOH . 
V 7 HOH B 41 641 66 HOH HOH . 
V 7 HOH B 42 642 677 HOH HOH . 
V 7 HOH B 43 643 11 HOH HOH . 
V 7 HOH B 44 644 52 HOH HOH . 
V 7 HOH B 45 645 6 HOH HOH . 
V 7 HOH B 46 646 732 HOH HOH . 
V 7 HOH B 47 647 609 HOH HOH . 
V 7 HOH B 48 648 666 HOH HOH . 
V 7 HOH B 49 649 727 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B AN2 . . . M 2 48.298 76.536 14.029 1 83.3 ? N3B AN2 501 B 1 
HETATM 2 P PB AN2 . . . M 2 47.541 75.893 15.473 1 83.05 ? PB AN2 501 B 1 
HETATM 3 O O2B AN2 . . . M 2 46.111 76.254 15.447 1 83.71 ? O2B AN2 501 B 1 
HETATM 4 O O1B AN2 . . . M 2 47.684 74.297 15.438 1 82.76 ? O1B AN2 501 B 1 
HETATM 5 O O3A AN2 . . . M 2 48.304 76.53 16.751 1 83.14 ? O3A AN2 501 B 1 
HETATM 6 P PA AN2 . . . M 2 47.746 77.544 17.9 1 82.73 ? PA AN2 501 B 1 
HETATM 7 O O1A AN2 . . . M 2 46.276 77.892 17.759 1 82.26 ? O1A AN2 501 B 1 
HETATM 8 O O2A AN2 . . . M 2 48.306 76.99 19.198 1 82.95 -1 O2A AN2 501 B 1 
HETATM 9 O O5' AN2 . . . M 2 48.614 78.848 17.637 1 82.12 ? O5' AN2 501 B 1 
HETATM 10 C C5' AN2 . . . M 2 50.026 78.687 17.551 1 81.76 ? C5' AN2 501 B 1 
HETATM 11 C C4' AN2 . . . M 2 50.627 80.061 17.303 1 81.51 ? C4' AN2 501 B 1 
HETATM 12 O O4' AN2 . . . M 2 50.153 80.992 18.289 1 81.75 ? O4' AN2 501 B 1 
HETATM 13 C C3' AN2 . . . M 2 52.136 80.025 17.413 1 81.28 ? C3' AN2 501 B 1 
HETATM 14 O O3' AN2 . . . M 2 52.636 80.739 16.289 1 81.31 ? O3' AN2 501 B 1 
HETATM 15 C C2' AN2 . . . M 2 52.427 80.826 18.671 1 81.37 ? C2' AN2 501 B 1 
HETATM 16 O O2' AN2 . . . M 2 53.655 81.545 18.637 1 81.36 ? O2' AN2 501 B 1 
HETATM 17 C C1' AN2 . . . M 2 51.237 81.75 18.809 1 81.53 ? C1' AN2 501 B 1 
HETATM 18 N N9 AN2 . . . M 2 51.009 82.111 20.225 1 81.61 ? N9 AN2 501 B 1 
HETATM 19 C C8 AN2 . . . M 2 50.72 81.311 21.272 1 81.78 ? C8 AN2 501 B 1 
HETATM 20 N N7 AN2 . . . M 2 50.643 82.041 22.42 1 82.17 ? N7 AN2 501 B 1 
HETATM 21 C C5 AN2 . . . M 2 50.862 83.325 22.095 1 82.24 ? C5 AN2 501 B 1 
HETATM 22 C C4 AN2 . . . M 2 51.119 83.355 20.649 1 82.09 ? C4 AN2 501 B 1 
HETATM 23 N N3 AN2 . . . M 2 51.355 84.532 20.013 1 82.36 ? N3 AN2 501 B 1 
HETATM 24 C C2 AN2 . . . M 2 51.391 85.673 20.717 1 82.35 ? C2 AN2 501 B 1 
HETATM 25 N N1 AN2 . . . M 2 51.183 85.73 22.053 1 82.61 ? N1 AN2 501 B 1 
HETATM 26 C C6 AN2 . . . M 2 50.914 84.622 22.801 1 82.73 ? C6 AN2 501 B 1 
HETATM 27 N N6 AN2 . . . M 2 50.723 84.674 24.146 1 83.08 ? N6 AN2 501 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           27 
#