data_7NQS # _model_server_result.job_id cbpi1CpKiawBZQRefBuN8g _model_server_result.datetime_utc '2024-11-15 03:13:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":509}' # _entry.id 7NQS # _exptl.entry_id 7NQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NQS _cell.length_a 79.88 _cell.length_b 102.87 _cell.length_c 103.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,U 1 1 B,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 7NQS _atom_sites.fract_transf_matrix[1][1] 0.012519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AN2 A 1 501 502 AN2 AN2 . D 3 GOL A 1 502 504 GOL GOL . E 3 GOL A 1 503 505 GOL GOL . F 3 GOL A 1 504 507 GOL GOL . G 3 GOL A 1 505 901 GOL GOL . H 4 PG4 A 1 506 1001 PG4 PG4 . I 3 GOL A 1 507 1101 GOL GOL . J 3 GOL A 1 508 1201 GOL GOL . K 3 GOL A 1 509 1301 GOL GOL . L 5 PO4 A 1 510 1 PO4 PO4 . M 2 AN2 B 1 501 502 AN2 AN2 . N 3 GOL B 1 502 503 GOL GOL . O 3 GOL B 1 503 504 GOL GOL . P 6 JH1 B 1 504 801 JH1 LIG . Q 3 GOL B 1 505 901 GOL GOL . R 3 GOL B 1 506 1001 GOL GOL . S 3 GOL B 1 507 1101 GOL GOL . T 5 PO4 B 1 508 2 PO4 PO4 . U 7 HOH A 1 601 687 HOH HOH . U 7 HOH A 2 602 674 HOH HOH . U 7 HOH A 3 603 2 HOH HOH . U 7 HOH A 4 604 607 HOH HOH . U 7 HOH A 5 605 633 HOH HOH . U 7 HOH A 6 606 608 HOH HOH . U 7 HOH A 7 607 8 HOH HOH . U 7 HOH A 8 608 616 HOH HOH . U 7 HOH A 9 609 679 HOH HOH . U 7 HOH A 10 610 80 HOH HOH . U 7 HOH A 11 611 625 HOH HOH . U 7 HOH A 12 612 109 HOH HOH . U 7 HOH A 13 613 636 HOH HOH . U 7 HOH A 14 614 663 HOH HOH . U 7 HOH A 15 615 680 HOH HOH . U 7 HOH A 16 616 715 HOH HOH . U 7 HOH A 17 617 728 HOH HOH . U 7 HOH A 18 618 707 HOH HOH . U 7 HOH A 19 619 611 HOH HOH . U 7 HOH A 20 620 642 HOH HOH . U 7 HOH A 21 621 18 HOH HOH . U 7 HOH A 22 622 638 HOH HOH . U 7 HOH A 23 623 9 HOH HOH . U 7 HOH A 24 624 712 HOH HOH . U 7 HOH A 25 625 624 HOH HOH . U 7 HOH A 26 626 658 HOH HOH . U 7 HOH A 27 627 1 HOH HOH . U 7 HOH A 28 628 726 HOH HOH . U 7 HOH A 29 629 609 HOH HOH . U 7 HOH A 30 630 734 HOH HOH . U 7 HOH A 31 631 701 HOH HOH . U 7 HOH A 32 632 82 HOH HOH . U 7 HOH A 33 633 628 HOH HOH . U 7 HOH A 34 634 699 HOH HOH . U 7 HOH A 35 635 81 HOH HOH . U 7 HOH A 36 636 666 HOH HOH . U 7 HOH A 37 637 648 HOH HOH . U 7 HOH A 38 638 635 HOH HOH . U 7 HOH A 39 639 743 HOH HOH . U 7 HOH A 40 640 692 HOH HOH . U 7 HOH A 41 641 720 HOH HOH . U 7 HOH A 42 642 668 HOH HOH . U 7 HOH A 43 643 675 HOH HOH . U 7 HOH A 44 644 653 HOH HOH . U 7 HOH A 45 645 689 HOH HOH . U 7 HOH A 46 646 656 HOH HOH . U 7 HOH A 47 647 708 HOH HOH . U 7 HOH A 48 648 70 HOH HOH . U 7 HOH A 49 649 749 HOH HOH . U 7 HOH A 50 650 673 HOH HOH . U 7 HOH A 51 651 62 HOH HOH . U 7 HOH A 52 652 722 HOH HOH . U 7 HOH A 53 653 768 HOH HOH . U 7 HOH A 54 654 655 HOH HOH . U 7 HOH A 55 655 53 HOH HOH . U 7 HOH A 56 656 102 HOH HOH . U 7 HOH A 57 657 56 HOH HOH . U 7 HOH A 58 658 752 HOH HOH . U 7 HOH A 59 659 750 HOH HOH . U 7 HOH A 60 660 671 HOH HOH . U 7 HOH A 61 661 22 HOH HOH . U 7 HOH A 62 662 788 HOH HOH . U 7 HOH A 63 663 98 HOH HOH . U 7 HOH A 64 664 759 HOH HOH . U 7 HOH A 65 665 35 HOH HOH . U 7 HOH A 66 666 130 HOH HOH . U 7 HOH A 67 667 785 HOH HOH . U 7 HOH A 68 668 84 HOH HOH . U 7 HOH A 69 669 683 HOH HOH . U 7 HOH A 70 670 790 HOH HOH . U 7 HOH A 71 671 659 HOH HOH . U 7 HOH A 72 672 69 HOH HOH . U 7 HOH A 73 673 27 HOH HOH . U 7 HOH A 74 674 67 HOH HOH . U 7 HOH A 75 675 778 HOH HOH . U 7 HOH A 76 676 782 HOH HOH . U 7 HOH A 77 677 604 HOH HOH . U 7 HOH A 78 678 665 HOH HOH . U 7 HOH A 79 679 760 HOH HOH . U 7 HOH A 80 680 23 HOH HOH . U 7 HOH A 81 681 68 HOH HOH . U 7 HOH A 82 682 721 HOH HOH . U 7 HOH A 83 683 729 HOH HOH . U 7 HOH A 84 684 138 HOH HOH . U 7 HOH A 85 685 137 HOH HOH . U 7 HOH A 86 686 744 HOH HOH . U 7 HOH A 87 687 76 HOH HOH . U 7 HOH A 88 688 118 HOH HOH . U 7 HOH A 89 689 794 HOH HOH . U 7 HOH A 90 690 789 HOH HOH . U 7 HOH A 91 691 42 HOH HOH . U 7 HOH A 92 692 136 HOH HOH . U 7 HOH A 93 693 3 HOH HOH . V 7 HOH B 1 601 117 HOH HOH . V 7 HOH B 2 602 107 HOH HOH . V 7 HOH B 3 603 604 HOH HOH . V 7 HOH B 4 604 4 HOH HOH . V 7 HOH B 5 605 79 HOH HOH . V 7 HOH B 6 606 617 HOH HOH . V 7 HOH B 7 607 618 HOH HOH . V 7 HOH B 8 608 630 HOH HOH . V 7 HOH B 9 609 88 HOH HOH . V 7 HOH B 10 610 648 HOH HOH . V 7 HOH B 11 611 639 HOH HOH . V 7 HOH B 12 612 25 HOH HOH . V 7 HOH B 13 613 642 HOH HOH . V 7 HOH B 14 614 97 HOH HOH . V 7 HOH B 15 615 645 HOH HOH . V 7 HOH B 16 616 45 HOH HOH . V 7 HOH B 17 617 94 HOH HOH . V 7 HOH B 18 618 101 HOH HOH . V 7 HOH B 19 619 610 HOH HOH . V 7 HOH B 20 620 658 HOH HOH . V 7 HOH B 21 621 657 HOH HOH . V 7 HOH B 22 622 623 HOH HOH . V 7 HOH B 23 623 656 HOH HOH . V 7 HOH B 24 624 640 HOH HOH . V 7 HOH B 25 625 702 HOH HOH . V 7 HOH B 26 626 685 HOH HOH . V 7 HOH B 27 627 16 HOH HOH . V 7 HOH B 28 628 697 HOH HOH . V 7 HOH B 29 629 626 HOH HOH . V 7 HOH B 30 630 682 HOH HOH . V 7 HOH B 31 631 715 HOH HOH . V 7 HOH B 32 632 71 HOH HOH . V 7 HOH B 33 633 678 HOH HOH . V 7 HOH B 34 634 676 HOH HOH . V 7 HOH B 35 635 681 HOH HOH . V 7 HOH B 36 636 703 HOH HOH . V 7 HOH B 37 637 26 HOH HOH . V 7 HOH B 38 638 112 HOH HOH . V 7 HOH B 39 639 730 HOH HOH . V 7 HOH B 40 640 60 HOH HOH . V 7 HOH B 41 641 66 HOH HOH . V 7 HOH B 42 642 677 HOH HOH . V 7 HOH B 43 643 11 HOH HOH . V 7 HOH B 44 644 52 HOH HOH . V 7 HOH B 45 645 6 HOH HOH . V 7 HOH B 46 646 732 HOH HOH . V 7 HOH B 47 647 609 HOH HOH . V 7 HOH B 48 648 666 HOH HOH . V 7 HOH B 49 649 727 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 3 5.446 63.569 54.274 1 106.95 ? C1 GOL 509 A 1 HETATM 2 O O1 GOL . . . K 3 6.4 62.9 53.449 1 106.52 ? O1 GOL 509 A 1 HETATM 3 C C2 GOL . . . K 3 6.083 64.614 55.165 1 107.12 ? C2 GOL 509 A 1 HETATM 4 O O2 GOL . . . K 3 6.826 65.543 54.375 1 107.02 ? O2 GOL 509 A 1 HETATM 5 C C3 GOL . . . K 3 4.995 65.358 55.904 1 107.45 ? C3 GOL 509 A 1 HETATM 6 O O3 GOL . . . K 3 5.525 66.524 56.517 1 107.69 ? O3 GOL 509 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #