data_7NQU # _model_server_result.job_id cwGfCV4nzuauf49SJ0ixmw _model_server_result.datetime_utc '2024-11-14 09:46:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":501}' # _entry.id 7NQU # _exptl.entry_id 7NQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NQU _cell.length_a 79.89 _cell.length_b 102.45 _cell.length_c 103.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,Z 1 1 B,P,Q,R,S,T,U,V,W,X,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 P N N ? 2 R N N ? 2 S N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 364 A PRO 390 1_555 A N CSX 365 A CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSX 365 A CSX 391 1_555 A N LYS 366 A LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C PRO 364 B PRO 390 1_555 B N CSX 365 B CSX 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C CSX 365 B CSX 391 1_555 B N LYS 366 B LYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 7NQU _atom_sites.fract_transf_matrix[1][1] 0.012517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 504 GOL GOL . D 3 AN2 A 1 502 1301 AN2 AN2 . E 2 GOL A 1 503 1401 GOL GOL . F 2 GOL A 1 504 1601 GOL GOL . G 2 GOL A 1 505 1701 GOL GOL . H 2 GOL A 1 506 2401 GOL GOL . I 4 PG4 A 1 507 2801 PG4 PG4 . J 2 GOL A 1 508 2901 GOL GOL . K 2 GOL A 1 509 3001 GOL GOL . L 5 PO4 A 1 510 1 PO4 PO4 . M 6 CL A 1 511 1 CL CL . N 6 CL A 1 512 2 CL CL . O 6 CL A 1 513 3 CL CL . P 2 GOL B 1 501 503 GOL GOL . Q 3 AN2 B 1 502 1101 AN2 AN2 . R 2 GOL B 1 503 1401 GOL GOL . S 2 GOL B 1 504 1601 GOL GOL . T 7 HR5 B 1 505 1701 HR5 LIG . U 2 GOL B 1 506 1801 GOL GOL . V 2 GOL B 1 507 2101 GOL GOL . W 2 GOL B 1 508 2201 GOL GOL . X 2 GOL B 1 509 2301 GOL GOL . Y 5 PO4 B 1 510 2 PO4 PO4 . Z 8 HOH A 1 601 108 HOH HOH . Z 8 HOH A 2 602 250 HOH HOH . Z 8 HOH A 3 603 76 HOH HOH . Z 8 HOH A 4 604 425 HOH HOH . Z 8 HOH A 5 605 608 HOH HOH . Z 8 HOH A 6 606 9 HOH HOH . Z 8 HOH A 7 607 601 HOH HOH . Z 8 HOH A 8 608 264 HOH HOH . Z 8 HOH A 9 609 391 HOH HOH . Z 8 HOH A 10 610 427 HOH HOH . Z 8 HOH A 11 611 326 HOH HOH . Z 8 HOH A 12 612 252 HOH HOH . Z 8 HOH A 13 613 653 HOH HOH . Z 8 HOH A 14 614 278 HOH HOH . Z 8 HOH A 15 615 663 HOH HOH . Z 8 HOH A 16 616 687 HOH HOH . Z 8 HOH A 17 617 255 HOH HOH . Z 8 HOH A 18 618 308 HOH HOH . Z 8 HOH A 19 619 121 HOH HOH . Z 8 HOH A 20 620 438 HOH HOH . Z 8 HOH A 21 621 405 HOH HOH . Z 8 HOH A 22 622 437 HOH HOH . Z 8 HOH A 23 623 624 HOH HOH . Z 8 HOH A 24 624 636 HOH HOH . Z 8 HOH A 25 625 633 HOH HOH . Z 8 HOH A 26 626 124 HOH HOH . Z 8 HOH A 27 627 680 HOH HOH . Z 8 HOH A 28 628 679 HOH HOH . Z 8 HOH A 29 629 664 HOH HOH . Z 8 HOH A 30 630 728 HOH HOH . Z 8 HOH A 31 631 642 HOH HOH . Z 8 HOH A 32 632 265 HOH HOH . Z 8 HOH A 33 633 200 HOH HOH . Z 8 HOH A 34 634 413 HOH HOH . Z 8 HOH A 35 635 707 HOH HOH . Z 8 HOH A 36 636 658 HOH HOH . Z 8 HOH A 37 637 429 HOH HOH . Z 8 HOH A 38 638 179 HOH HOH . Z 8 HOH A 39 639 671 HOH HOH . Z 8 HOH A 40 640 605 HOH HOH . Z 8 HOH A 41 641 708 HOH HOH . Z 8 HOH A 42 642 449 HOH HOH . Z 8 HOH A 43 643 674 HOH HOH . Z 8 HOH A 44 644 638 HOH HOH . Z 8 HOH A 45 645 157 HOH HOH . Z 8 HOH A 46 646 418 HOH HOH . Z 8 HOH A 47 647 21 HOH HOH . Z 8 HOH A 48 648 695 HOH HOH . Z 8 HOH A 49 649 43 HOH HOH . Z 8 HOH A 50 650 720 HOH HOH . Z 8 HOH A 51 651 675 HOH HOH . Z 8 HOH A 52 652 701 HOH HOH . Z 8 HOH A 53 653 668 HOH HOH . Z 8 HOH A 54 654 648 HOH HOH . Z 8 HOH A 55 655 717 HOH HOH . Z 8 HOH A 56 656 172 HOH HOH . Z 8 HOH A 57 657 296 HOH HOH . Z 8 HOH A 58 658 279 HOH HOH . Z 8 HOH A 59 659 692 HOH HOH . Z 8 HOH A 60 660 656 HOH HOH . Z 8 HOH A 61 661 263 HOH HOH . Z 8 HOH A 62 662 141 HOH HOH . Z 8 HOH A 63 663 383 HOH HOH . Z 8 HOH A 64 664 156 HOH HOH . Z 8 HOH A 65 665 715 HOH HOH . Z 8 HOH A 66 666 706 HOH HOH . Z 8 HOH A 67 667 712 HOH HOH . Z 8 HOH A 68 668 133 HOH HOH . Z 8 HOH A 69 669 686 HOH HOH . Z 8 HOH A 70 670 289 HOH HOH . Z 8 HOH A 71 671 419 HOH HOH . Z 8 HOH A 72 672 689 HOH HOH . Z 8 HOH A 73 673 387 HOH HOH . Z 8 HOH A 74 674 440 HOH HOH . Z 8 HOH A 75 675 294 HOH HOH . Z 8 HOH A 76 676 699 HOH HOH . Z 8 HOH A 77 677 748 HOH HOH . Z 8 HOH A 78 678 446 HOH HOH . Z 8 HOH A 79 679 424 HOH HOH . Z 8 HOH A 80 680 392 HOH HOH . Z 8 HOH A 81 681 286 HOH HOH . Z 8 HOH A 82 682 759 HOH HOH . Z 8 HOH A 83 683 222 HOH HOH . Z 8 HOH A 84 684 393 HOH HOH . Z 8 HOH A 85 685 160 HOH HOH . Z 8 HOH A 86 686 753 HOH HOH . Z 8 HOH A 87 687 93 HOH HOH . Z 8 HOH A 88 688 328 HOH HOH . Z 8 HOH A 89 689 768 HOH HOH . Z 8 HOH A 90 690 741 HOH HOH . Z 8 HOH A 91 691 770 HOH HOH . Z 8 HOH A 92 692 752 HOH HOH . Z 8 HOH A 93 693 726 HOH HOH . Z 8 HOH A 94 694 372 HOH HOH . Z 8 HOH A 95 695 444 HOH HOH . Z 8 HOH A 96 696 721 HOH HOH . Z 8 HOH A 97 697 165 HOH HOH . Z 8 HOH A 98 698 42 HOH HOH . Z 8 HOH A 99 699 785 HOH HOH . Z 8 HOH A 100 700 778 HOH HOH . Z 8 HOH A 101 701 70 HOH HOH . Z 8 HOH A 102 702 396 HOH HOH . Z 8 HOH A 103 703 333 HOH HOH . Z 8 HOH A 104 704 788 HOH HOH . Z 8 HOH A 105 705 253 HOH HOH . Z 8 HOH A 106 706 27 HOH HOH . Z 8 HOH A 107 707 790 HOH HOH . Z 8 HOH A 108 708 776 HOH HOH . Z 8 HOH A 109 709 269 HOH HOH . Z 8 HOH A 110 710 789 HOH HOH . Z 8 HOH A 111 711 415 HOH HOH . Z 8 HOH A 112 712 713 HOH HOH . Z 8 HOH A 113 713 366 HOH HOH . Z 8 HOH A 114 714 257 HOH HOH . Z 8 HOH A 115 715 411 HOH HOH . Z 8 HOH A 116 716 306 HOH HOH . Z 8 HOH A 117 717 416 HOH HOH . Z 8 HOH A 118 718 371 HOH HOH . Z 8 HOH A 119 719 803 HOH HOH . Z 8 HOH A 120 720 310 HOH HOH . Z 8 HOH A 121 721 799 HOH HOH . Z 8 HOH A 122 722 414 HOH HOH . Z 8 HOH A 123 723 322 HOH HOH . Z 8 HOH A 124 724 337 HOH HOH . Z 8 HOH A 125 725 325 HOH HOH . AA 8 HOH B 1 601 447 HOH HOH . AA 8 HOH B 2 602 304 HOH HOH . AA 8 HOH B 3 603 183 HOH HOH . AA 8 HOH B 4 604 604 HOH HOH . AA 8 HOH B 5 605 116 HOH HOH . AA 8 HOH B 6 606 430 HOH HOH . AA 8 HOH B 7 607 660 HOH HOH . AA 8 HOH B 8 608 399 HOH HOH . AA 8 HOH B 9 609 299 HOH HOH . AA 8 HOH B 10 610 423 HOH HOH . AA 8 HOH B 11 611 620 HOH HOH . AA 8 HOH B 12 612 448 HOH HOH . AA 8 HOH B 13 613 408 HOH HOH . AA 8 HOH B 14 614 442 HOH HOH . AA 8 HOH B 15 615 180 HOH HOH . AA 8 HOH B 16 616 630 HOH HOH . AA 8 HOH B 17 617 159 HOH HOH . AA 8 HOH B 18 618 439 HOH HOH . AA 8 HOH B 19 619 643 HOH HOH . AA 8 HOH B 20 620 642 HOH HOH . AA 8 HOH B 21 621 417 HOH HOH . AA 8 HOH B 22 622 645 HOH HOH . AA 8 HOH B 23 623 634 HOH HOH . AA 8 HOH B 24 624 421 HOH HOH . AA 8 HOH B 25 625 639 HOH HOH . AA 8 HOH B 26 626 682 HOH HOH . AA 8 HOH B 27 627 623 HOH HOH . AA 8 HOH B 28 628 120 HOH HOH . AA 8 HOH B 29 629 155 HOH HOH . AA 8 HOH B 30 630 401 HOH HOH . AA 8 HOH B 31 631 420 HOH HOH . AA 8 HOH B 32 632 319 HOH HOH . AA 8 HOH B 33 633 398 HOH HOH . AA 8 HOH B 34 634 161 HOH HOH . AA 8 HOH B 35 635 656 HOH HOH . AA 8 HOH B 36 636 406 HOH HOH . AA 8 HOH B 37 637 164 HOH HOH . AA 8 HOH B 38 638 274 HOH HOH . AA 8 HOH B 39 639 174 HOH HOH . AA 8 HOH B 40 640 117 HOH HOH . AA 8 HOH B 41 641 7 HOH HOH . AA 8 HOH B 42 642 404 HOH HOH . AA 8 HOH B 43 643 657 HOH HOH . AA 8 HOH B 44 644 202 HOH HOH . AA 8 HOH B 45 645 445 HOH HOH . AA 8 HOH B 46 646 703 HOH HOH . AA 8 HOH B 47 647 767 HOH HOH . AA 8 HOH B 48 648 192 HOH HOH . AA 8 HOH B 49 649 148 HOH HOH . AA 8 HOH B 50 650 323 HOH HOH . AA 8 HOH B 51 651 678 HOH HOH . AA 8 HOH B 52 652 683 HOH HOH . AA 8 HOH B 53 653 378 HOH HOH . AA 8 HOH B 54 654 681 HOH HOH . AA 8 HOH B 55 655 101 HOH HOH . AA 8 HOH B 56 656 677 HOH HOH . AA 8 HOH B 57 657 443 HOH HOH . AA 8 HOH B 58 658 46 HOH HOH . AA 8 HOH B 59 659 441 HOH HOH . AA 8 HOH B 60 660 332 HOH HOH . AA 8 HOH B 61 661 436 HOH HOH . AA 8 HOH B 62 662 74 HOH HOH . AA 8 HOH B 63 663 170 HOH HOH . AA 8 HOH B 64 664 388 HOH HOH . AA 8 HOH B 65 665 609 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 2 40.578 62.696 37.08 1 86.9 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . P 2 40.911 61.995 38.265 1 87.18 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . P 2 39.165 62.392 36.647 1 86.84 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . P 2 38.307 62.485 37.763 1 87.08 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . P 2 39.039 61.015 36.052 1 87.55 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . P 2 39.68 60.072 36.885 1 88.35 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #