data_7NR7 # _model_server_result.job_id pejvXaBE-3gd7kspc6XJew _model_server_result.datetime_utc '2024-11-25 17:48:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7NR7 # _exptl.entry_id 7NR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NR7 _cell.length_a 83.015 _cell.length_b 112.864 _cell.length_c 62.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A NZ LYS 127 A LYS 122 1_555 C C02 UON . A UON 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.423 ? covale ? covale6 A NZ LYS 127 A LYS 122 1_555 D C02 UOT . A UOT 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.434 ? covale ? covale7 B C GLY 6 P GLY 44 1_555 B N SEP 7 P SEP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C SEP 7 P SEP 45 1_555 B N ILE 8 P ILE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 7NR7 _atom_sites.fract_transf_matrix[1][1] 0.012046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UON A 1 301 1 UON LNA . D 4 UOT A 1 302 1 UOT LNB . E 5 PEG A 1 303 1 PEG PEG . F 6 CL A 1 304 1 CL CL . G 7 GOL A 1 305 1 GOL GOL . H 8 HOH A 1 401 93 HOH HOH . H 8 HOH A 2 402 233 HOH HOH . H 8 HOH A 3 403 95 HOH HOH . H 8 HOH A 4 404 151 HOH HOH . H 8 HOH A 5 405 158 HOH HOH . H 8 HOH A 6 406 218 HOH HOH . H 8 HOH A 7 407 120 HOH HOH . H 8 HOH A 8 408 275 HOH HOH . H 8 HOH A 9 409 143 HOH HOH . H 8 HOH A 10 410 135 HOH HOH . H 8 HOH A 11 411 252 HOH HOH . H 8 HOH A 12 412 270 HOH HOH . H 8 HOH A 13 413 148 HOH HOH . H 8 HOH A 14 414 215 HOH HOH . H 8 HOH A 15 415 280 HOH HOH . H 8 HOH A 16 416 99 HOH HOH . H 8 HOH A 17 417 85 HOH HOH . H 8 HOH A 18 418 25 HOH HOH . H 8 HOH A 19 419 205 HOH HOH . H 8 HOH A 20 420 27 HOH HOH . H 8 HOH A 21 421 277 HOH HOH . H 8 HOH A 22 422 100 HOH HOH . H 8 HOH A 23 423 170 HOH HOH . H 8 HOH A 24 424 146 HOH HOH . H 8 HOH A 25 425 133 HOH HOH . H 8 HOH A 26 426 17 HOH HOH . H 8 HOH A 27 427 268 HOH HOH . H 8 HOH A 28 428 177 HOH HOH . H 8 HOH A 29 429 155 HOH HOH . H 8 HOH A 30 430 192 HOH HOH . H 8 HOH A 31 431 145 HOH HOH . H 8 HOH A 32 432 55 HOH HOH . H 8 HOH A 33 433 134 HOH HOH . H 8 HOH A 34 434 251 HOH HOH . H 8 HOH A 35 435 203 HOH HOH . H 8 HOH A 36 436 88 HOH HOH . H 8 HOH A 37 437 119 HOH HOH . H 8 HOH A 38 438 116 HOH HOH . H 8 HOH A 39 439 16 HOH HOH . H 8 HOH A 40 440 150 HOH HOH . H 8 HOH A 41 441 48 HOH HOH . H 8 HOH A 42 442 11 HOH HOH . H 8 HOH A 43 443 86 HOH HOH . H 8 HOH A 44 444 199 HOH HOH . H 8 HOH A 45 445 72 HOH HOH . H 8 HOH A 46 446 202 HOH HOH . H 8 HOH A 47 447 195 HOH HOH . H 8 HOH A 48 448 274 HOH HOH . H 8 HOH A 49 449 200 HOH HOH . H 8 HOH A 50 450 108 HOH HOH . H 8 HOH A 51 451 118 HOH HOH . H 8 HOH A 52 452 24 HOH HOH . H 8 HOH A 53 453 6 HOH HOH . H 8 HOH A 54 454 102 HOH HOH . H 8 HOH A 55 455 5 HOH HOH . H 8 HOH A 56 456 7 HOH HOH . H 8 HOH A 57 457 115 HOH HOH . H 8 HOH A 58 458 62 HOH HOH . H 8 HOH A 59 459 21 HOH HOH . H 8 HOH A 60 460 60 HOH HOH . H 8 HOH A 61 461 173 HOH HOH . H 8 HOH A 62 462 14 HOH HOH . H 8 HOH A 63 463 104 HOH HOH . H 8 HOH A 64 464 87 HOH HOH . H 8 HOH A 65 465 66 HOH HOH . H 8 HOH A 66 466 43 HOH HOH . H 8 HOH A 67 467 64 HOH HOH . H 8 HOH A 68 468 41 HOH HOH . H 8 HOH A 69 469 4 HOH HOH . H 8 HOH A 70 470 276 HOH HOH . H 8 HOH A 71 471 89 HOH HOH . H 8 HOH A 72 472 35 HOH HOH . H 8 HOH A 73 473 75 HOH HOH . H 8 HOH A 74 474 107 HOH HOH . H 8 HOH A 75 475 140 HOH HOH . H 8 HOH A 76 476 82 HOH HOH . H 8 HOH A 77 477 15 HOH HOH . H 8 HOH A 78 478 96 HOH HOH . H 8 HOH A 79 479 124 HOH HOH . H 8 HOH A 80 480 32 HOH HOH . H 8 HOH A 81 481 154 HOH HOH . H 8 HOH A 82 482 147 HOH HOH . H 8 HOH A 83 483 51 HOH HOH . H 8 HOH A 84 484 138 HOH HOH . H 8 HOH A 85 485 139 HOH HOH . H 8 HOH A 86 486 161 HOH HOH . H 8 HOH A 87 487 77 HOH HOH . H 8 HOH A 88 488 184 HOH HOH . H 8 HOH A 89 489 114 HOH HOH . H 8 HOH A 90 490 78 HOH HOH . H 8 HOH A 91 491 283 HOH HOH . H 8 HOH A 92 492 18 HOH HOH . H 8 HOH A 93 493 8 HOH HOH . H 8 HOH A 94 494 31 HOH HOH . H 8 HOH A 95 495 42 HOH HOH . H 8 HOH A 96 496 190 HOH HOH . H 8 HOH A 97 497 224 HOH HOH . H 8 HOH A 98 498 10 HOH HOH . H 8 HOH A 99 499 178 HOH HOH . H 8 HOH A 100 500 38 HOH HOH . H 8 HOH A 101 501 26 HOH HOH . H 8 HOH A 102 502 101 HOH HOH . H 8 HOH A 103 503 30 HOH HOH . H 8 HOH A 104 504 39 HOH HOH . H 8 HOH A 105 505 79 HOH HOH . H 8 HOH A 106 506 61 HOH HOH . H 8 HOH A 107 507 65 HOH HOH . H 8 HOH A 108 508 52 HOH HOH . H 8 HOH A 109 509 112 HOH HOH . H 8 HOH A 110 510 12 HOH HOH . H 8 HOH A 111 511 49 HOH HOH . H 8 HOH A 112 512 54 HOH HOH . H 8 HOH A 113 513 63 HOH HOH . H 8 HOH A 114 514 81 HOH HOH . H 8 HOH A 115 515 34 HOH HOH . H 8 HOH A 116 516 162 HOH HOH . H 8 HOH A 117 517 83 HOH HOH . H 8 HOH A 118 518 144 HOH HOH . H 8 HOH A 119 519 73 HOH HOH . H 8 HOH A 120 520 19 HOH HOH . H 8 HOH A 121 521 282 HOH HOH . H 8 HOH A 122 522 211 HOH HOH . H 8 HOH A 123 523 44 HOH HOH . H 8 HOH A 124 524 156 HOH HOH . H 8 HOH A 125 525 13 HOH HOH . H 8 HOH A 126 526 209 HOH HOH . H 8 HOH A 127 527 132 HOH HOH . H 8 HOH A 128 528 33 HOH HOH . H 8 HOH A 129 529 45 HOH HOH . H 8 HOH A 130 530 53 HOH HOH . H 8 HOH A 131 531 20 HOH HOH . H 8 HOH A 132 532 111 HOH HOH . H 8 HOH A 133 533 109 HOH HOH . H 8 HOH A 134 534 98 HOH HOH . H 8 HOH A 135 535 204 HOH HOH . H 8 HOH A 136 536 97 HOH HOH . H 8 HOH A 137 537 106 HOH HOH . H 8 HOH A 138 538 236 HOH HOH . H 8 HOH A 139 539 58 HOH HOH . H 8 HOH A 140 540 37 HOH HOH . H 8 HOH A 141 541 188 HOH HOH . H 8 HOH A 142 542 255 HOH HOH . H 8 HOH A 143 543 84 HOH HOH . H 8 HOH A 144 544 67 HOH HOH . H 8 HOH A 145 545 46 HOH HOH . H 8 HOH A 146 546 59 HOH HOH . H 8 HOH A 147 547 222 HOH HOH . H 8 HOH A 148 548 28 HOH HOH . H 8 HOH A 149 549 286 HOH HOH . H 8 HOH A 150 550 50 HOH HOH . H 8 HOH A 151 551 23 HOH HOH . H 8 HOH A 152 552 40 HOH HOH . H 8 HOH A 153 553 92 HOH HOH . H 8 HOH A 154 554 131 HOH HOH . H 8 HOH A 155 555 128 HOH HOH . H 8 HOH A 156 556 69 HOH HOH . H 8 HOH A 157 557 121 HOH HOH . H 8 HOH A 158 558 242 HOH HOH . H 8 HOH A 159 559 160 HOH HOH . H 8 HOH A 160 560 57 HOH HOH . H 8 HOH A 161 561 56 HOH HOH . H 8 HOH A 162 562 185 HOH HOH . H 8 HOH A 163 563 174 HOH HOH . H 8 HOH A 164 564 248 HOH HOH . H 8 HOH A 165 565 157 HOH HOH . H 8 HOH A 166 566 117 HOH HOH . H 8 HOH A 167 567 127 HOH HOH . H 8 HOH A 168 568 136 HOH HOH . H 8 HOH A 169 569 193 HOH HOH . H 8 HOH A 170 570 269 HOH HOH . H 8 HOH A 171 571 210 HOH HOH . H 8 HOH A 172 572 212 HOH HOH . H 8 HOH A 173 573 227 HOH HOH . H 8 HOH A 174 574 149 HOH HOH . H 8 HOH A 175 575 196 HOH HOH . H 8 HOH A 176 576 94 HOH HOH . H 8 HOH A 177 577 287 HOH HOH . H 8 HOH A 178 578 223 HOH HOH . H 8 HOH A 179 579 80 HOH HOH . H 8 HOH A 180 580 179 HOH HOH . H 8 HOH A 181 581 3 HOH HOH . H 8 HOH A 182 582 201 HOH HOH . H 8 HOH A 183 583 103 HOH HOH . H 8 HOH A 184 584 264 HOH HOH . H 8 HOH A 185 585 47 HOH HOH . H 8 HOH A 186 586 220 HOH HOH . H 8 HOH A 187 587 290 HOH HOH . H 8 HOH A 188 588 244 HOH HOH . H 8 HOH A 189 589 225 HOH HOH . H 8 HOH A 190 590 265 HOH HOH . H 8 HOH A 191 591 217 HOH HOH . H 8 HOH A 192 592 186 HOH HOH . H 8 HOH A 193 593 168 HOH HOH . H 8 HOH A 194 594 285 HOH HOH . H 8 HOH A 195 595 260 HOH HOH . H 8 HOH A 196 596 234 HOH HOH . H 8 HOH A 197 597 189 HOH HOH . H 8 HOH A 198 598 123 HOH HOH . H 8 HOH A 199 599 267 HOH HOH . H 8 HOH A 200 600 142 HOH HOH . H 8 HOH A 201 601 129 HOH HOH . H 8 HOH A 202 602 254 HOH HOH . H 8 HOH A 203 603 163 HOH HOH . H 8 HOH A 204 604 71 HOH HOH . H 8 HOH A 205 605 292 HOH HOH . H 8 HOH A 206 606 29 HOH HOH . H 8 HOH A 207 607 191 HOH HOH . H 8 HOH A 208 608 36 HOH HOH . H 8 HOH A 209 609 198 HOH HOH . H 8 HOH A 210 610 141 HOH HOH . H 8 HOH A 211 611 175 HOH HOH . H 8 HOH A 212 612 266 HOH HOH . H 8 HOH A 213 613 247 HOH HOH . H 8 HOH A 214 614 231 HOH HOH . H 8 HOH A 215 615 164 HOH HOH . H 8 HOH A 216 616 167 HOH HOH . H 8 HOH A 217 617 152 HOH HOH . H 8 HOH A 218 618 291 HOH HOH . H 8 HOH A 219 619 166 HOH HOH . H 8 HOH A 220 620 197 HOH HOH . H 8 HOH A 221 621 187 HOH HOH . H 8 HOH A 222 622 125 HOH HOH . H 8 HOH A 223 623 70 HOH HOH . H 8 HOH A 224 624 130 HOH HOH . H 8 HOH A 225 625 293 HOH HOH . H 8 HOH A 226 626 182 HOH HOH . H 8 HOH A 227 627 263 HOH HOH . H 8 HOH A 228 628 22 HOH HOH . H 8 HOH A 229 629 213 HOH HOH . H 8 HOH A 230 630 76 HOH HOH . H 8 HOH A 231 631 91 HOH HOH . H 8 HOH A 232 632 207 HOH HOH . H 8 HOH A 233 633 181 HOH HOH . H 8 HOH A 234 634 74 HOH HOH . H 8 HOH A 235 635 243 HOH HOH . H 8 HOH A 236 636 68 HOH HOH . H 8 HOH A 237 637 238 HOH HOH . I 8 HOH P 1 101 126 HOH HOH . I 8 HOH P 2 102 183 HOH HOH . I 8 HOH P 3 103 240 HOH HOH . I 8 HOH P 4 104 105 HOH HOH . I 8 HOH P 5 105 194 HOH HOH . I 8 HOH P 6 106 137 HOH HOH . I 8 HOH P 7 107 256 HOH HOH . I 8 HOH P 8 108 258 HOH HOH . I 8 HOH P 9 109 208 HOH HOH . I 8 HOH P 10 110 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 7 -27.548 -2.946 -1.608 1 35.98 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . G 7 -26.206 -2.918 -2.025 1 42.58 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . G 7 -28.439 -2.14 -2.625 1 43.07 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . G 7 -27.72 -1.187 -3.304 1 49.8 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . G 7 -28.848 -3.254 -3.537 1 35.18 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . G 7 -29.864 -3.086 -4.401 1 24.12 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #