data_7NRF # _model_server_result.job_id 6twlkFY-TGcwa8hPeXrXcg _model_server_result.datetime_utc '2024-12-22 08:08:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 7NRF # _exptl.entry_id 7NRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.42 _cell.angle_gamma 90 _cell.entry_id 7NRF _cell.length_a 79.61 _cell.length_b 79.814 _cell.length_c 89.346 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CZ2 TRP 1 B TRP 1 1_555 B O9 UX8 3 B UX8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 B C ASN 2 B ASN 2 1_555 B N UX8 3 B UX8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale3 B C UX8 3 B UX8 3 1_555 B N SER 4 B SER 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale4 B CH2 UX8 3 B UX8 3 1_555 B CB LYS 5 B LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? metalc ? metalc1 A OD2 ASP 98 A ASP 497 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OD2 ASP 98 A ASP 497 1_555 C MG MG . A MG 1001 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 C MG MG . A MG 1001 1_555 L O HOH . A HOH 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 C MG MG . A MG 1001 1_555 L O HOH . A HOH 1136 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 7NRF _atom_sites.fract_transf_matrix[1][1] 0.012561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1001 1001 MG MG . D 4 C8E A 1 1002 1101 C8E C8E . E 4 C8E A 1 1003 1201 C8E C8E . F 4 C8E A 1 1004 1301 C8E C8E . G 4 C8E A 1 1005 1401 C8E C8E . H 4 C8E A 1 1006 1601 C8E C8E . I 4 C8E A 1 1007 1701 C8E C8E . J 4 C8E A 1 1008 1801 C8E C8E . K 4 C8E A 1 1009 1901 C8E C8E . L 5 HOH A 1 1101 31 HOH HOH . L 5 HOH A 2 1102 137 HOH HOH . L 5 HOH A 3 1103 9 HOH HOH . L 5 HOH A 4 1104 16 HOH HOH . L 5 HOH A 5 1105 1 HOH HOH . L 5 HOH A 6 1106 142 HOH HOH . L 5 HOH A 7 1107 129 HOH HOH . L 5 HOH A 8 1108 61 HOH HOH . L 5 HOH A 9 1109 26 HOH HOH . L 5 HOH A 10 1110 116 HOH HOH . L 5 HOH A 11 1111 146 HOH HOH . L 5 HOH A 12 1112 124 HOH HOH . L 5 HOH A 13 1113 101 HOH HOH . L 5 HOH A 14 1114 133 HOH HOH . L 5 HOH A 15 1115 119 HOH HOH . L 5 HOH A 16 1116 57 HOH HOH . L 5 HOH A 17 1117 3 HOH HOH . L 5 HOH A 18 1118 50 HOH HOH . L 5 HOH A 19 1119 52 HOH HOH . L 5 HOH A 20 1120 11 HOH HOH . L 5 HOH A 21 1121 60 HOH HOH . L 5 HOH A 22 1122 120 HOH HOH . L 5 HOH A 23 1123 62 HOH HOH . L 5 HOH A 24 1124 135 HOH HOH . L 5 HOH A 25 1125 113 HOH HOH . L 5 HOH A 26 1126 27 HOH HOH . L 5 HOH A 27 1127 36 HOH HOH . L 5 HOH A 28 1128 88 HOH HOH . L 5 HOH A 29 1129 37 HOH HOH . L 5 HOH A 30 1130 114 HOH HOH . L 5 HOH A 31 1131 134 HOH HOH . L 5 HOH A 32 1132 139 HOH HOH . L 5 HOH A 33 1133 49 HOH HOH . L 5 HOH A 34 1134 70 HOH HOH . L 5 HOH A 35 1135 126 HOH HOH . L 5 HOH A 36 1136 141 HOH HOH . L 5 HOH A 37 1137 2 HOH HOH . L 5 HOH A 38 1138 121 HOH HOH . L 5 HOH A 39 1139 47 HOH HOH . L 5 HOH A 40 1140 46 HOH HOH . L 5 HOH A 41 1141 21 HOH HOH . L 5 HOH A 42 1142 127 HOH HOH . L 5 HOH A 43 1143 79 HOH HOH . L 5 HOH A 44 1144 34 HOH HOH . L 5 HOH A 45 1145 117 HOH HOH . L 5 HOH A 46 1146 147 HOH HOH . L 5 HOH A 47 1147 132 HOH HOH . L 5 HOH A 48 1148 140 HOH HOH . L 5 HOH A 49 1149 17 HOH HOH . L 5 HOH A 50 1150 96 HOH HOH . L 5 HOH A 51 1151 18 HOH HOH . L 5 HOH A 52 1152 122 HOH HOH . L 5 HOH A 53 1153 15 HOH HOH . L 5 HOH A 54 1154 131 HOH HOH . L 5 HOH A 55 1155 90 HOH HOH . L 5 HOH A 56 1156 83 HOH HOH . L 5 HOH A 57 1157 130 HOH HOH . L 5 HOH A 58 1158 23 HOH HOH . L 5 HOH A 59 1159 39 HOH HOH . L 5 HOH A 60 1160 92 HOH HOH . L 5 HOH A 61 1161 138 HOH HOH . L 5 HOH A 62 1162 128 HOH HOH . L 5 HOH A 63 1163 118 HOH HOH . L 5 HOH A 64 1164 51 HOH HOH . L 5 HOH A 65 1165 4 HOH HOH . L 5 HOH A 66 1166 76 HOH HOH . L 5 HOH A 67 1167 32 HOH HOH . L 5 HOH A 68 1168 25 HOH HOH . L 5 HOH A 69 1169 123 HOH HOH . L 5 HOH A 70 1170 55 HOH HOH . L 5 HOH A 71 1171 24 HOH HOH . L 5 HOH A 72 1172 20 HOH HOH . L 5 HOH A 73 1173 143 HOH HOH . L 5 HOH A 74 1174 8 HOH HOH . L 5 HOH A 75 1175 85 HOH HOH . L 5 HOH A 76 1176 112 HOH HOH . L 5 HOH A 77 1177 5 HOH HOH . L 5 HOH A 78 1178 33 HOH HOH . L 5 HOH A 79 1179 14 HOH HOH . L 5 HOH A 80 1180 58 HOH HOH . L 5 HOH A 81 1181 67 HOH HOH . L 5 HOH A 82 1182 6 HOH HOH . L 5 HOH A 83 1183 107 HOH HOH . L 5 HOH A 84 1184 12 HOH HOH . L 5 HOH A 85 1185 66 HOH HOH . L 5 HOH A 86 1186 43 HOH HOH . L 5 HOH A 87 1187 100 HOH HOH . L 5 HOH A 88 1188 97 HOH HOH . L 5 HOH A 89 1189 22 HOH HOH . L 5 HOH A 90 1190 125 HOH HOH . L 5 HOH A 91 1191 105 HOH HOH . L 5 HOH A 92 1192 144 HOH HOH . L 5 HOH A 93 1193 109 HOH HOH . L 5 HOH A 94 1194 136 HOH HOH . L 5 HOH A 95 1195 54 HOH HOH . L 5 HOH A 96 1196 7 HOH HOH . L 5 HOH A 97 1197 63 HOH HOH . L 5 HOH A 98 1198 104 HOH HOH . L 5 HOH A 99 1199 74 HOH HOH . L 5 HOH A 100 1200 94 HOH HOH . L 5 HOH A 101 1201 72 HOH HOH . L 5 HOH A 102 1202 108 HOH HOH . L 5 HOH A 103 1203 145 HOH HOH . L 5 HOH A 104 1204 87 HOH HOH . L 5 HOH A 105 1205 64 HOH HOH . L 5 HOH A 106 1206 53 HOH HOH . L 5 HOH A 107 1207 106 HOH HOH . L 5 HOH A 108 1208 82 HOH HOH . L 5 HOH A 109 1209 35 HOH HOH . L 5 HOH A 110 1210 102 HOH HOH . L 5 HOH A 111 1211 38 HOH HOH . L 5 HOH A 112 1212 98 HOH HOH . L 5 HOH A 113 1213 42 HOH HOH . L 5 HOH A 114 1214 115 HOH HOH . L 5 HOH A 115 1215 84 HOH HOH . L 5 HOH A 116 1216 111 HOH HOH . L 5 HOH A 117 1217 103 HOH HOH . L 5 HOH A 118 1218 93 HOH HOH . L 5 HOH A 119 1219 80 HOH HOH . L 5 HOH A 120 1220 41 HOH HOH . L 5 HOH A 121 1221 40 HOH HOH . L 5 HOH A 122 1222 44 HOH HOH . L 5 HOH A 123 1223 91 HOH HOH . L 5 HOH A 124 1224 81 HOH HOH . L 5 HOH A 125 1225 78 HOH HOH . L 5 HOH A 126 1226 75 HOH HOH . L 5 HOH A 127 1227 68 HOH HOH . L 5 HOH A 128 1228 71 HOH HOH . L 5 HOH A 129 1229 86 HOH HOH . L 5 HOH A 130 1230 148 HOH HOH . L 5 HOH A 131 1231 110 HOH HOH . L 5 HOH A 132 1232 95 HOH HOH . L 5 HOH A 133 1233 73 HOH HOH . L 5 HOH A 134 1234 56 HOH HOH . L 5 HOH A 135 1235 45 HOH HOH . L 5 HOH A 136 1236 77 HOH HOH . L 5 HOH A 137 1237 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . D 4 39.073 4.65 36.188 1 71.81 ? C1 C8E 1002 A 1 HETATM 2 C C2 C8E . . . D 4 38.485 3.927 37.392 1 72.49 ? C2 C8E 1002 A 1 HETATM 3 C C3 C8E . . . D 4 38.83 2.454 37.283 1 71.2 ? C3 C8E 1002 A 1 HETATM 4 C C4 C8E . . . D 4 37.941 1.564 38.146 1 70.54 ? C4 C8E 1002 A 1 HETATM 5 C C5 C8E . . . D 4 38.417 0.127 38.006 1 73.42 ? C5 C8E 1002 A 1 HETATM 6 C C6 C8E . . . D 4 37.319 -0.82 38.469 1 73.98 ? C6 C8E 1002 A 1 HETATM 7 C C7 C8E . . . D 4 37.385 -2.231 37.891 1 73.87 ? C7 C8E 1002 A 1 HETATM 8 C C8 C8E . . . D 4 36.095 -2.937 38.312 1 78.17 ? C8 C8E 1002 A 1 HETATM 9 O O9 C8E . . . D 4 36.029 -4.299 37.93 1 83.29 ? O9 C8E 1002 A 1 HETATM 10 C C10 C8E . . . D 4 35.309 -5.123 38.828 1 88.19 ? C10 C8E 1002 A 1 HETATM 11 C C11 C8E . . . D 4 34.999 -6.411 38.068 1 95.59 ? C11 C8E 1002 A 1 HETATM 12 O O12 C8E . . . D 4 34.179 -7.33 38.766 1 101.41 ? O12 C8E 1002 A 1 HETATM 13 C C13 C8E . . . D 4 33.827 -8.376 37.889 1 105.45 ? C13 C8E 1002 A 1 HETATM 14 C C14 C8E . . . D 4 33.626 -9.661 38.679 1 109.58 ? C14 C8E 1002 A 1 HETATM 15 O O15 C8E . . . D 4 34.746 -10.512 38.484 1 111.33 ? O15 C8E 1002 A 1 HETATM 16 H H11 C8E . . . D 4 39.718 3.968 35.634 1 86.54 ? H11 C8E 1002 A 1 HETATM 17 H H12 C8E . . . D 4 38.266 4.994 35.541 1 86.54 ? H12 C8E 1002 A 1 HETATM 18 H H13 C8E . . . D 4 39.657 5.506 36.528 1 86.54 ? H13 C8E 1002 A 1 HETATM 19 H H21 C8E . . . D 4 38.894 4.34 38.314 1 87.36 ? H21 C8E 1002 A 1 HETATM 20 H H22 C8E . . . D 4 37.404 4.058 37.417 1 87.36 ? H22 C8E 1002 A 1 HETATM 21 H H31 C8E . . . D 4 38.734 2.145 36.242 1 85.81 ? H31 C8E 1002 A 1 HETATM 22 H H32 C8E . . . D 4 39.869 2.311 37.581 1 85.81 ? H32 C8E 1002 A 1 HETATM 23 H H41 C8E . . . D 4 36.903 1.648 37.826 1 85.02 ? H41 C8E 1002 A 1 HETATM 24 H H42 C8E . . . D 4 37.997 1.878 39.189 1 85.02 ? H42 C8E 1002 A 1 HETATM 25 H H51 C8E . . . D 4 38.67 -0.08 36.966 1 88.48 ? H51 C8E 1002 A 1 HETATM 26 H H52 C8E . . . D 4 39.314 -0.026 38.606 1 88.48 ? H52 C8E 1002 A 1 HETATM 27 H H61 C8E . . . D 4 37.364 -0.892 39.556 1 89.14 ? H61 C8E 1002 A 1 HETATM 28 H H62 C8E . . . D 4 36.356 -0.385 38.202 1 89.14 ? H62 C8E 1002 A 1 HETATM 29 H H71 C8E . . . D 4 37.467 -2.197 36.805 1 89.01 ? H71 C8E 1002 A 1 HETATM 30 H H72 C8E . . . D 4 38.256 -2.763 38.276 1 89.01 ? H72 C8E 1002 A 1 HETATM 31 H H81 C8E . . . D 4 35.249 -2.409 37.87 1 94.17 ? H81 C8E 1002 A 1 HETATM 32 H H82 C8E . . . D 4 36 -2.873 39.396 1 94.17 ? H82 C8E 1002 A 1 HETATM 33 H H101 C8E . . . D 4 35.903 -5.334 39.717 1 106.2 ? H101 C8E 1002 A 1 HETATM 34 H H102 C8E . . . D 4 34.389 -4.634 39.148 1 106.2 ? H102 C8E 1002 A 1 HETATM 35 H H111 C8E . . . D 4 34.506 -6.15 37.132 1 115.08 ? H111 C8E 1002 A 1 HETATM 36 H H112 C8E . . . D 4 35.94 -6.904 37.824 1 115.08 ? H112 C8E 1002 A 1 HETATM 37 H H131 C8E . . . D 4 32.91 -8.121 37.359 1 126.91 ? H131 C8E 1002 A 1 HETATM 38 H H132 C8E . . . D 4 34.614 -8.518 37.148 1 126.91 ? H132 C8E 1002 A 1 HETATM 39 H H141 C8E . . . D 4 33.514 -9.432 39.739 1 131.87 ? H141 C8E 1002 A 1 HETATM 40 H H142 C8E . . . D 4 32.717 -10.163 38.347 1 131.87 ? H142 C8E 1002 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #