data_7NRY # _model_server_result.job_id kOzvCuAA9rcSNtTGKaZX4w _model_server_result.datetime_utc '2024-11-27 03:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7NRY # _exptl.entry_id 7NRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(10R)-10-methyl-3-(6-methylpyridin-3-yl)-9,10,11,12-tetrahydro-8H-[1,4]diazepino[5',6':4,5]thieno[3,2-f]quinolin-8-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NRY _cell.length_a 255.551 _cell.length_b 255.551 _cell.length_c 255.551 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall 'F 4d 2 3' _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 60_665 -y+3/2,-z+3/2,x 0 -1 0 0 0 -1 1 0 0 383.3265 383.3265 0 3 'crystal symmetry operation' 78_566 z,-x+3/2,-y+3/2 0 0 1 -1 0 0 0 -1 0 0 383.3265 383.3265 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 N4 O S' _chem_comp.formula_weight 374.459 _chem_comp.id B97 _chem_comp.mon_nstd_flag . _chem_comp.name "(10R)-10-methyl-3-(6-methylpyridin-3-yl)-9,10,11,12-tetrahydro-8H-[1,4]diazepino[5',6':4,5]thieno[3,2-f]quinolin-8-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 B97 doub 70 n y C15 C16 B97 sing 71 n y C19 C20 B97 doub 72 n y C19 C18 B97 sing 73 n y C10 C9 B97 doub 74 n y C10 C11 B97 sing 75 n y C9 C8 B97 sing 76 n y C14 C13 B97 sing 77 n y C20 C21 B97 sing 78 n y C24 C18 B97 doub 79 n y C24 N23 B97 sing 80 n y C16 C17 B97 sing 81 n y C16 C11 B97 doub 82 n y C17 C5 B97 sing 83 n y C17 C8 B97 doub 84 n y C18 C13 B97 sing 85 n y C11 N12 B97 sing 86 n y C5 C6 B97 doub 87 n y C5 N4 B97 sing 88 n n C8 S7 B97 sing 89 n y C13 N12 B97 doub 90 n y C6 C25 B97 sing 91 n n C6 S7 B97 sing 92 n y C21 C22 B97 sing 93 n n C21 N23 B97 doub 94 n y C25 N27 B97 sing 95 n n C25 O26 B97 doub 96 n n C3 C2 B97 sing 97 n n C3 N4 B97 sing 98 n n C2 C1 B97 sing 99 n n C2 N27 B97 sing 100 n n C15 H15 B97 sing 101 n n C19 H19 B97 sing 102 n n C10 H10 B97 sing 103 n n C9 H9 B97 sing 104 n n C14 H14 B97 sing 105 n n C20 H20 B97 sing 106 n n C24 H24 B97 sing 107 n n C3 H3 B97 sing 108 n n C3 H3A B97 sing 109 n n C2 H2 B97 sing 110 n n C22 H22 B97 sing 111 n n C22 H22A B97 sing 112 n n C22 H22B B97 sing 113 n n C1 H1 B97 sing 114 n n C1 H1A B97 sing 115 n n C1 H1B B97 sing 116 n n N4 HN4 B97 sing 117 n n N27 HN27 B97 sing 118 n n # _atom_sites.entry_id 7NRY _atom_sites.fract_transf_matrix[1][1] 0.003913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B97 X 1 401 372 B97 B97 . C 3 CL X 1 402 373 CL CL . D 4 MLA X 1 403 375 MLA MLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 B97 . . . B 2 81.212 262.346 109.668 1 177.7 ? C15 B97 401 X 1 HETATM 2 C C19 B97 . . . B 2 77.672 264.749 107.312 1 112.58 ? C19 B97 401 X 1 HETATM 3 C C10 B97 . . . B 2 82.802 264.294 106.879 1 154.89 ? C10 B97 401 X 1 HETATM 4 C C9 B97 . . . B 2 84.118 264.133 107.102 1 128.02 ? C9 B97 401 X 1 HETATM 5 C C14 B97 . . . B 2 79.874 262.57 109.366 1 175.67 ? C14 B97 401 X 1 HETATM 6 C C20 B97 . . . B 2 76.306 264.914 107.078 1 116.01 ? C20 B97 401 X 1 HETATM 7 C C24 B97 . . . B 2 77.146 262.646 108.349 1 190.74 ? C24 B97 401 X 1 HETATM 8 C C16 B97 . . . B 2 82.215 262.905 108.864 1 142.93 ? C16 B97 401 X 1 HETATM 9 C C17 B97 . . . B 2 83.62 262.725 109.103 1 147.65 ? C17 B97 401 X 1 HETATM 10 C C18 B97 . . . B 2 78.12 263.589 107.954 1 158.16 ? C18 B97 401 X 1 HETATM 11 C C11 B97 . . . B 2 81.792 263.696 107.747 1 121.45 ? C11 B97 401 X 1 HETATM 12 C C5 B97 . . . B 2 84.311 262.02 110.086 1 155.12 ? C5 B97 401 X 1 HETATM 13 C C8 B97 . . . B 2 84.624 263.36 108.193 1 126.9 ? C8 B97 401 X 1 HETATM 14 C C13 B97 . . . B 2 79.543 263.359 108.243 1 146.17 ? C13 B97 401 X 1 HETATM 15 C C6 B97 . . . B 2 85.764 262.209 109.836 1 141.88 ? C6 B97 401 X 1 HETATM 16 C C21 B97 . . . B 2 75.406 263.913 107.501 1 160.79 ? C21 B97 401 X 1 HETATM 17 C C25 B97 . . . B 2 86.906 261.672 110.551 1 128.68 ? C25 B97 401 X 1 HETATM 18 C C3 B97 . . . B 2 84.499 260.966 112.293 1 137.55 ? C3 B97 401 X 1 HETATM 19 C C2 B97 . . . B 2 85.74 260.058 112.087 1 152.54 ? C2 B97 401 X 1 HETATM 20 C C22 B97 . . . B 2 73.945 264.099 107.247 1 148.06 ? C22 B97 401 X 1 HETATM 21 C C1 B97 . . . B 2 85.33 258.869 111.212 1 146.76 ? C1 B97 401 X 1 HETATM 22 N N23 B97 . . . B 2 75.83 262.788 108.132 1 186.6 ? N23 B97 401 X 1 HETATM 23 N N12 B97 . . . B 2 80.486 263.917 107.449 1 113.81 ? N12 B97 401 X 1 HETATM 24 N N4 B97 . . . B 2 83.722 261.296 111.128 1 160.61 ? N4 B97 401 X 1 HETATM 25 N N27 B97 . . . B 2 86.884 260.748 111.549 1 121.27 ? N27 B97 401 X 1 HETATM 26 O O26 B97 . . . B 2 88.038 262.156 110.226 1 153.67 ? O26 B97 401 X 1 HETATM 27 S S7 B97 . . . B 2 85.957 263.046 108.637 1 158.29 ? S7 B97 401 X 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #