data_7NSV
#
_model_server_result.job_id            1OI__SW7XKTaDO3malXllQ 
_model_server_result.datetime_utc      '2025-06-22 19:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nsv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    7NSV 
#
_exptl.entry_id    7NSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NSV 
_cell.length_a            82.288 
_cell.length_b            112.163 
_cell.length_c            62.634 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A NZ LYS 127 A LYS 122 1_555 C C02 UQN . A UQN 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.429 ? 
covale ? covale4 A NZ LYS 127 A LYS 122 1_555 C C02 UQN . A UQN 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? 
covale ? covale5 B C GLY 6 P GLY 44 1_555 B N SEP 7 P SEP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C SEP 7 P SEP 45 1_555 B N ILE 8 P ILE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 143 n n 
C1 C2 GOL sing 144 n n 
C1 H11 GOL sing 145 n n 
C1 H12 GOL sing 146 n n 
O1 HO1 GOL sing 147 n n 
C2 O2 GOL sing 148 n n 
C2 C3 GOL sing 149 n n 
C2 H2 GOL sing 150 n n 
O2 HO2 GOL sing 151 n n 
C3 O3 GOL sing 152 n n 
C3 H31 GOL sing 153 n n 
C3 H32 GOL sing 154 n n 
O3 HO3 GOL sing 155 n n 
#
_atom_sites.entry_id                     7NSV 
_atom_sites.fract_transf_matrix[1][1]    0.012152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008916 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 UQN A 1 301 1 UQN PCO . 
D 4 GOL A 1 302 1 GOL GOL . 
E 5 HOH A 1 401 68 HOH HOH . 
E 5 HOH A 2 402 217 HOH HOH . 
E 5 HOH A 3 403 197 HOH HOH . 
E 5 HOH A 4 404 131 HOH HOH . 
E 5 HOH A 5 405 211 HOH HOH . 
E 5 HOH A 6 406 58 HOH HOH . 
E 5 HOH A 7 407 162 HOH HOH . 
E 5 HOH A 8 408 213 HOH HOH . 
E 5 HOH A 9 409 203 HOH HOH . 
E 5 HOH A 10 410 135 HOH HOH . 
E 5 HOH A 11 411 141 HOH HOH . 
E 5 HOH A 12 412 127 HOH HOH . 
E 5 HOH A 13 413 204 HOH HOH . 
E 5 HOH A 14 414 144 HOH HOH . 
E 5 HOH A 15 415 143 HOH HOH . 
E 5 HOH A 16 416 181 HOH HOH . 
E 5 HOH A 17 417 225 HOH HOH . 
E 5 HOH A 18 418 172 HOH HOH . 
E 5 HOH A 19 419 234 HOH HOH . 
E 5 HOH A 20 420 25 HOH HOH . 
E 5 HOH A 21 421 187 HOH HOH . 
E 5 HOH A 22 422 208 HOH HOH . 
E 5 HOH A 23 423 122 HOH HOH . 
E 5 HOH A 24 424 12 HOH HOH . 
E 5 HOH A 25 425 199 HOH HOH . 
E 5 HOH A 26 426 8 HOH HOH . 
E 5 HOH A 27 427 145 HOH HOH . 
E 5 HOH A 28 428 243 HOH HOH . 
E 5 HOH A 29 429 207 HOH HOH . 
E 5 HOH A 30 430 191 HOH HOH . 
E 5 HOH A 31 431 196 HOH HOH . 
E 5 HOH A 32 432 190 HOH HOH . 
E 5 HOH A 33 433 182 HOH HOH . 
E 5 HOH A 34 434 15 HOH HOH . 
E 5 HOH A 35 435 104 HOH HOH . 
E 5 HOH A 36 436 51 HOH HOH . 
E 5 HOH A 37 437 22 HOH HOH . 
E 5 HOH A 38 438 70 HOH HOH . 
E 5 HOH A 39 439 228 HOH HOH . 
E 5 HOH A 40 440 97 HOH HOH . 
E 5 HOH A 41 441 65 HOH HOH . 
E 5 HOH A 42 442 136 HOH HOH . 
E 5 HOH A 43 443 107 HOH HOH . 
E 5 HOH A 44 444 37 HOH HOH . 
E 5 HOH A 45 445 137 HOH HOH . 
E 5 HOH A 46 446 244 HOH HOH . 
E 5 HOH A 47 447 169 HOH HOH . 
E 5 HOH A 48 448 120 HOH HOH . 
E 5 HOH A 49 449 7 HOH HOH . 
E 5 HOH A 50 450 209 HOH HOH . 
E 5 HOH A 51 451 111 HOH HOH . 
E 5 HOH A 52 452 222 HOH HOH . 
E 5 HOH A 53 453 106 HOH HOH . 
E 5 HOH A 54 454 67 HOH HOH . 
E 5 HOH A 55 455 173 HOH HOH . 
E 5 HOH A 56 456 4 HOH HOH . 
E 5 HOH A 57 457 184 HOH HOH . 
E 5 HOH A 58 458 125 HOH HOH . 
E 5 HOH A 59 459 91 HOH HOH . 
E 5 HOH A 60 460 33 HOH HOH . 
E 5 HOH A 61 461 134 HOH HOH . 
E 5 HOH A 62 462 81 HOH HOH . 
E 5 HOH A 63 463 88 HOH HOH . 
E 5 HOH A 64 464 42 HOH HOH . 
E 5 HOH A 65 465 64 HOH HOH . 
E 5 HOH A 66 466 71 HOH HOH . 
E 5 HOH A 67 467 49 HOH HOH . 
E 5 HOH A 68 468 28 HOH HOH . 
E 5 HOH A 69 469 40 HOH HOH . 
E 5 HOH A 70 470 179 HOH HOH . 
E 5 HOH A 71 471 5 HOH HOH . 
E 5 HOH A 72 472 158 HOH HOH . 
E 5 HOH A 73 473 39 HOH HOH . 
E 5 HOH A 74 474 150 HOH HOH . 
E 5 HOH A 75 475 114 HOH HOH . 
E 5 HOH A 76 476 94 HOH HOH . 
E 5 HOH A 77 477 229 HOH HOH . 
E 5 HOH A 78 478 24 HOH HOH . 
E 5 HOH A 79 479 26 HOH HOH . 
E 5 HOH A 80 480 29 HOH HOH . 
E 5 HOH A 81 481 66 HOH HOH . 
E 5 HOH A 82 482 50 HOH HOH . 
E 5 HOH A 83 483 99 HOH HOH . 
E 5 HOH A 84 484 163 HOH HOH . 
E 5 HOH A 85 485 27 HOH HOH . 
E 5 HOH A 86 486 61 HOH HOH . 
E 5 HOH A 87 487 159 HOH HOH . 
E 5 HOH A 88 488 84 HOH HOH . 
E 5 HOH A 89 489 18 HOH HOH . 
E 5 HOH A 90 490 119 HOH HOH . 
E 5 HOH A 91 491 13 HOH HOH . 
E 5 HOH A 92 492 167 HOH HOH . 
E 5 HOH A 93 493 16 HOH HOH . 
E 5 HOH A 94 494 57 HOH HOH . 
E 5 HOH A 95 495 168 HOH HOH . 
E 5 HOH A 96 496 10 HOH HOH . 
E 5 HOH A 97 497 132 HOH HOH . 
E 5 HOH A 98 498 139 HOH HOH . 
E 5 HOH A 99 499 202 HOH HOH . 
E 5 HOH A 100 500 171 HOH HOH . 
E 5 HOH A 101 501 90 HOH HOH . 
E 5 HOH A 102 502 189 HOH HOH . 
E 5 HOH A 103 503 77 HOH HOH . 
E 5 HOH A 104 504 17 HOH HOH . 
E 5 HOH A 105 505 92 HOH HOH . 
E 5 HOH A 106 506 9 HOH HOH . 
E 5 HOH A 107 507 100 HOH HOH . 
E 5 HOH A 108 508 180 HOH HOH . 
E 5 HOH A 109 509 44 HOH HOH . 
E 5 HOH A 110 510 226 HOH HOH . 
E 5 HOH A 111 511 23 HOH HOH . 
E 5 HOH A 112 512 34 HOH HOH . 
E 5 HOH A 113 513 116 HOH HOH . 
E 5 HOH A 114 514 93 HOH HOH . 
E 5 HOH A 115 515 48 HOH HOH . 
E 5 HOH A 116 516 86 HOH HOH . 
E 5 HOH A 117 517 161 HOH HOH . 
E 5 HOH A 118 518 138 HOH HOH . 
E 5 HOH A 119 519 85 HOH HOH . 
E 5 HOH A 120 520 193 HOH HOH . 
E 5 HOH A 121 521 35 HOH HOH . 
E 5 HOH A 122 522 230 HOH HOH . 
E 5 HOH A 123 523 227 HOH HOH . 
E 5 HOH A 124 524 73 HOH HOH . 
E 5 HOH A 125 525 53 HOH HOH . 
E 5 HOH A 126 526 31 HOH HOH . 
E 5 HOH A 127 527 215 HOH HOH . 
E 5 HOH A 128 528 46 HOH HOH . 
E 5 HOH A 129 529 126 HOH HOH . 
E 5 HOH A 130 530 36 HOH HOH . 
E 5 HOH A 131 531 20 HOH HOH . 
E 5 HOH A 132 532 178 HOH HOH . 
E 5 HOH A 133 533 154 HOH HOH . 
E 5 HOH A 134 534 233 HOH HOH . 
E 5 HOH A 135 535 63 HOH HOH . 
E 5 HOH A 136 536 56 HOH HOH . 
E 5 HOH A 137 537 43 HOH HOH . 
E 5 HOH A 138 538 45 HOH HOH . 
E 5 HOH A 139 539 69 HOH HOH . 
E 5 HOH A 140 540 147 HOH HOH . 
E 5 HOH A 141 541 60 HOH HOH . 
E 5 HOH A 142 542 129 HOH HOH . 
E 5 HOH A 143 543 55 HOH HOH . 
E 5 HOH A 144 544 54 HOH HOH . 
E 5 HOH A 145 545 32 HOH HOH . 
E 5 HOH A 146 546 235 HOH HOH . 
E 5 HOH A 147 547 14 HOH HOH . 
E 5 HOH A 148 548 240 HOH HOH . 
E 5 HOH A 149 549 87 HOH HOH . 
E 5 HOH A 150 550 231 HOH HOH . 
E 5 HOH A 151 551 19 HOH HOH . 
E 5 HOH A 152 552 205 HOH HOH . 
E 5 HOH A 153 553 239 HOH HOH . 
E 5 HOH A 154 554 80 HOH HOH . 
E 5 HOH A 155 555 98 HOH HOH . 
E 5 HOH A 156 556 102 HOH HOH . 
E 5 HOH A 157 557 186 HOH HOH . 
E 5 HOH A 158 558 47 HOH HOH . 
E 5 HOH A 159 559 76 HOH HOH . 
E 5 HOH A 160 560 41 HOH HOH . 
E 5 HOH A 161 561 175 HOH HOH . 
E 5 HOH A 162 562 115 HOH HOH . 
E 5 HOH A 163 563 224 HOH HOH . 
E 5 HOH A 164 564 221 HOH HOH . 
E 5 HOH A 165 565 82 HOH HOH . 
E 5 HOH A 166 566 149 HOH HOH . 
E 5 HOH A 167 567 140 HOH HOH . 
E 5 HOH A 168 568 95 HOH HOH . 
E 5 HOH A 169 569 110 HOH HOH . 
E 5 HOH A 170 570 133 HOH HOH . 
E 5 HOH A 171 571 79 HOH HOH . 
E 5 HOH A 172 572 74 HOH HOH . 
E 5 HOH A 173 573 113 HOH HOH . 
E 5 HOH A 174 574 105 HOH HOH . 
E 5 HOH A 175 575 220 HOH HOH . 
E 5 HOH A 176 576 128 HOH HOH . 
E 5 HOH A 177 577 236 HOH HOH . 
E 5 HOH A 178 578 121 HOH HOH . 
E 5 HOH A 179 579 146 HOH HOH . 
E 5 HOH A 180 580 183 HOH HOH . 
E 5 HOH A 181 581 232 HOH HOH . 
E 5 HOH A 182 582 210 HOH HOH . 
E 5 HOH A 183 583 212 HOH HOH . 
E 5 HOH A 184 584 101 HOH HOH . 
E 5 HOH A 185 585 78 HOH HOH . 
E 5 HOH A 186 586 3 HOH HOH . 
E 5 HOH A 187 587 195 HOH HOH . 
E 5 HOH A 188 588 242 HOH HOH . 
E 5 HOH A 189 589 148 HOH HOH . 
E 5 HOH A 190 590 201 HOH HOH . 
E 5 HOH A 191 591 174 HOH HOH . 
E 5 HOH A 192 592 219 HOH HOH . 
E 5 HOH A 193 593 52 HOH HOH . 
E 5 HOH A 194 594 156 HOH HOH . 
E 5 HOH A 195 595 223 HOH HOH . 
E 5 HOH A 196 596 206 HOH HOH . 
E 5 HOH A 197 597 157 HOH HOH . 
E 5 HOH A 198 598 214 HOH HOH . 
E 5 HOH A 199 599 151 HOH HOH . 
E 5 HOH A 200 600 123 HOH HOH . 
E 5 HOH A 201 601 38 HOH HOH . 
E 5 HOH A 202 602 89 HOH HOH . 
E 5 HOH A 203 603 198 HOH HOH . 
E 5 HOH A 204 604 194 HOH HOH . 
E 5 HOH A 205 605 21 HOH HOH . 
E 5 HOH A 206 606 165 HOH HOH . 
E 5 HOH A 207 607 130 HOH HOH . 
E 5 HOH A 208 608 103 HOH HOH . 
E 5 HOH A 209 609 118 HOH HOH . 
E 5 HOH A 210 610 160 HOH HOH . 
E 5 HOH A 211 611 108 HOH HOH . 
E 5 HOH A 212 612 241 HOH HOH . 
E 5 HOH A 213 613 216 HOH HOH . 
E 5 HOH A 214 614 83 HOH HOH . 
E 5 HOH A 215 615 75 HOH HOH . 
E 5 HOH A 216 616 153 HOH HOH . 
E 5 HOH A 217 617 30 HOH HOH . 
E 5 HOH A 218 618 200 HOH HOH . 
E 5 HOH A 219 619 142 HOH HOH . 
E 5 HOH A 220 620 152 HOH HOH . 
E 5 HOH A 221 621 188 HOH HOH . 
E 5 HOH A 222 622 109 HOH HOH . 
E 5 HOH A 223 623 96 HOH HOH . 
E 5 HOH A 224 624 112 HOH HOH . 
E 5 HOH A 225 625 72 HOH HOH . 
E 5 HOH A 226 626 177 HOH HOH . 
F 5 HOH P 1 101 238 HOH HOH . 
F 5 HOH P 2 102 124 HOH HOH . 
F 5 HOH P 3 103 11 HOH HOH . 
F 5 HOH P 4 104 164 HOH HOH . 
F 5 HOH P 5 105 237 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 27.34 2.435 -1.512 1 38.94 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . D 4 26.163 3.104 -1.95 1 38 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . D 4 28.145 1.941 -2.759 1 40.06 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . D 4 27.381 1.078 -3.521 1 42.5 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . D 4 28.427 3.248 -3.474 1 31.23 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . D 4 29.42 3.261 -4.465 1 15.66 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#