data_7NT2 # _model_server_result.job_id K5UnyW2puS4oUOwakFwamQ _model_server_result.datetime_utc '2024-11-16 00:36:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":604}' # _entry.id 7NT2 # _exptl.entry_id 7NT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.382 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1S)-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NT2 _cell.length_a 68.155 _cell.length_b 100.588 _cell.length_c 104.726 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id URK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id URK _struct_conn.ptnr2_auth_seq_id 604 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.809 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H20 N2 O7' _chem_comp.formula_weight 400.382 _chem_comp.id URK _chem_comp.mon_nstd_flag . _chem_comp.name '[(1S)-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(1~{S})-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl] prop-2-enoate;FSP006' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 N1 URK sing 383 n n O2 N1 URK doub 384 n n N1 C8 URK sing 385 n n C9 C8 URK doub 386 n y C9 C10 URK sing 387 n y C8 C7 URK sing 388 n y C19 C18 URK doub 389 n y C19 C20 URK sing 390 n y C18 C16 URK sing 391 n y C10 C5 URK doub 392 n y C20 C13 URK doub 393 n y C7 C6 URK doub 394 n y C16 O5 URK sing 395 n n C16 C14 URK doub 396 n y C5 C6 URK sing 397 n y C5 C4 URK sing 398 n n C13 C14 URK sing 399 n y C13 C12 URK sing 400 n n C17 O5 URK sing 401 n n N2 C11 URK sing 402 n n N2 C12 URK sing 403 n n O6 C11 URK doub 404 n n C14 O4 URK sing 405 n n C11 C4 URK sing 406 n n C4 O1 URK sing 407 n n O4 C15 URK sing 408 n n O1 C3 URK sing 409 n n C3 O7 URK doub 410 n n C3 C2 URK sing 411 n n C2 C1 URK doub 412 n n C1 H1 URK sing 413 n n C1 H2 URK sing 414 n n C2 H4 URK sing 415 n n C4 H6 URK sing 416 n n C6 H7 URK sing 417 n n C7 H8 URK sing 418 n n C9 H9 URK sing 419 n n C10 H10 URK sing 420 n n N2 H11 URK sing 421 n n C12 H12 URK sing 422 n n C12 H13 URK sing 423 n n C15 H14 URK sing 424 n n C15 H15 URK sing 425 n n C15 H16 URK sing 426 n n C17 H17 URK sing 427 n n C17 H18 URK sing 428 n n C17 H19 URK sing 429 n n C18 H20 URK sing 430 n n C19 H21 URK sing 431 n n C20 H22 URK sing 432 n n # _atom_sites.entry_id 7NT2 _atom_sites.fract_transf_matrix[1][1] 0.014672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 601 601 DMS DMS . D 2 DMS A 1 602 701 DMS DMS . E 3 CL A 1 603 801 CL CL . F 2 DMS B 1 601 601 DMS DMS . G 2 DMS B 1 602 701 DMS DMS . H 2 DMS B 1 603 901 DMS DMS . I 4 URK B 1 604 1101 URK FS6 . J 5 PEG B 1 605 1201 PEG PEG . K 2 DMS B 1 606 1401 DMS DMS . L 6 HOH A 1 701 222 HOH HOH . L 6 HOH A 2 702 138 HOH HOH . L 6 HOH A 3 703 126 HOH HOH . L 6 HOH A 4 704 217 HOH HOH . L 6 HOH A 5 705 150 HOH HOH . L 6 HOH A 6 706 112 HOH HOH . L 6 HOH A 7 707 97 HOH HOH . L 6 HOH A 8 708 174 HOH HOH . L 6 HOH A 9 709 36 HOH HOH . L 6 HOH A 10 710 203 HOH HOH . L 6 HOH A 11 711 125 HOH HOH . L 6 HOH A 12 712 108 HOH HOH . L 6 HOH A 13 713 17 HOH HOH . L 6 HOH A 14 714 85 HOH HOH . L 6 HOH A 15 715 78 HOH HOH . L 6 HOH A 16 716 202 HOH HOH . L 6 HOH A 17 717 64 HOH HOH . L 6 HOH A 18 718 122 HOH HOH . L 6 HOH A 19 719 198 HOH HOH . L 6 HOH A 20 720 74 HOH HOH . L 6 HOH A 21 721 60 HOH HOH . L 6 HOH A 22 722 37 HOH HOH . L 6 HOH A 23 723 62 HOH HOH . L 6 HOH A 24 724 200 HOH HOH . L 6 HOH A 25 725 25 HOH HOH . L 6 HOH A 26 726 31 HOH HOH . L 6 HOH A 27 727 55 HOH HOH . L 6 HOH A 28 728 69 HOH HOH . L 6 HOH A 29 729 214 HOH HOH . L 6 HOH A 30 730 65 HOH HOH . L 6 HOH A 31 731 81 HOH HOH . L 6 HOH A 32 732 11 HOH HOH . L 6 HOH A 33 733 7 HOH HOH . L 6 HOH A 34 734 51 HOH HOH . L 6 HOH A 35 735 70 HOH HOH . L 6 HOH A 36 736 28 HOH HOH . L 6 HOH A 37 737 104 HOH HOH . L 6 HOH A 38 738 43 HOH HOH . L 6 HOH A 39 739 42 HOH HOH . L 6 HOH A 40 740 199 HOH HOH . L 6 HOH A 41 741 192 HOH HOH . L 6 HOH A 42 742 29 HOH HOH . L 6 HOH A 43 743 77 HOH HOH . L 6 HOH A 44 744 102 HOH HOH . L 6 HOH A 45 745 34 HOH HOH . L 6 HOH A 46 746 160 HOH HOH . L 6 HOH A 47 747 38 HOH HOH . L 6 HOH A 48 748 212 HOH HOH . L 6 HOH A 49 749 123 HOH HOH . L 6 HOH A 50 750 67 HOH HOH . L 6 HOH A 51 751 211 HOH HOH . L 6 HOH A 52 752 141 HOH HOH . L 6 HOH A 53 753 47 HOH HOH . L 6 HOH A 54 754 117 HOH HOH . L 6 HOH A 55 755 1 HOH HOH . L 6 HOH A 56 756 210 HOH HOH . L 6 HOH A 57 757 5 HOH HOH . L 6 HOH A 58 758 101 HOH HOH . L 6 HOH A 59 759 61 HOH HOH . L 6 HOH A 60 760 114 HOH HOH . L 6 HOH A 61 761 201 HOH HOH . L 6 HOH A 62 762 115 HOH HOH . L 6 HOH A 63 763 191 HOH HOH . L 6 HOH A 64 764 164 HOH HOH . L 6 HOH A 65 765 89 HOH HOH . L 6 HOH A 66 766 190 HOH HOH . L 6 HOH A 67 767 137 HOH HOH . L 6 HOH A 68 768 196 HOH HOH . M 6 HOH B 1 701 157 HOH HOH . M 6 HOH B 2 702 133 HOH HOH . M 6 HOH B 3 703 171 HOH HOH . M 6 HOH B 4 704 176 HOH HOH . M 6 HOH B 5 705 151 HOH HOH . M 6 HOH B 6 706 224 HOH HOH . M 6 HOH B 7 707 103 HOH HOH . M 6 HOH B 8 708 16 HOH HOH . M 6 HOH B 9 709 147 HOH HOH . M 6 HOH B 10 710 175 HOH HOH . M 6 HOH B 11 711 172 HOH HOH . M 6 HOH B 12 712 93 HOH HOH . M 6 HOH B 13 713 216 HOH HOH . M 6 HOH B 14 714 72 HOH HOH . M 6 HOH B 15 715 119 HOH HOH . M 6 HOH B 16 716 207 HOH HOH . M 6 HOH B 17 717 183 HOH HOH . M 6 HOH B 18 718 83 HOH HOH . M 6 HOH B 19 719 76 HOH HOH . M 6 HOH B 20 720 189 HOH HOH . M 6 HOH B 21 721 95 HOH HOH . M 6 HOH B 22 722 116 HOH HOH . M 6 HOH B 23 723 44 HOH HOH . M 6 HOH B 24 724 91 HOH HOH . M 6 HOH B 25 725 88 HOH HOH . M 6 HOH B 26 726 22 HOH HOH . M 6 HOH B 27 727 75 HOH HOH . M 6 HOH B 28 728 66 HOH HOH . M 6 HOH B 29 729 179 HOH HOH . M 6 HOH B 30 730 162 HOH HOH . M 6 HOH B 31 731 153 HOH HOH . M 6 HOH B 32 732 9 HOH HOH . M 6 HOH B 33 733 124 HOH HOH . M 6 HOH B 34 734 121 HOH HOH . M 6 HOH B 35 735 30 HOH HOH . M 6 HOH B 36 736 127 HOH HOH . M 6 HOH B 37 737 218 HOH HOH . M 6 HOH B 38 738 49 HOH HOH . M 6 HOH B 39 739 19 HOH HOH . M 6 HOH B 40 740 221 HOH HOH . M 6 HOH B 41 741 134 HOH HOH . M 6 HOH B 42 742 39 HOH HOH . M 6 HOH B 43 743 213 HOH HOH . M 6 HOH B 44 744 135 HOH HOH . M 6 HOH B 45 745 227 HOH HOH . M 6 HOH B 46 746 140 HOH HOH . M 6 HOH B 47 747 52 HOH HOH . M 6 HOH B 48 748 58 HOH HOH . M 6 HOH B 49 749 90 HOH HOH . M 6 HOH B 50 750 35 HOH HOH . M 6 HOH B 51 751 120 HOH HOH . M 6 HOH B 52 752 57 HOH HOH . M 6 HOH B 53 753 107 HOH HOH . M 6 HOH B 54 754 68 HOH HOH . M 6 HOH B 55 755 32 HOH HOH . M 6 HOH B 56 756 86 HOH HOH . M 6 HOH B 57 757 168 HOH HOH . M 6 HOH B 58 758 79 HOH HOH . M 6 HOH B 59 759 27 HOH HOH . M 6 HOH B 60 760 53 HOH HOH . M 6 HOH B 61 761 226 HOH HOH . M 6 HOH B 62 762 177 HOH HOH . M 6 HOH B 63 763 184 HOH HOH . M 6 HOH B 64 764 18 HOH HOH . M 6 HOH B 65 765 46 HOH HOH . M 6 HOH B 66 766 20 HOH HOH . M 6 HOH B 67 767 41 HOH HOH . M 6 HOH B 68 768 173 HOH HOH . M 6 HOH B 69 769 23 HOH HOH . M 6 HOH B 70 770 130 HOH HOH . M 6 HOH B 71 771 195 HOH HOH . M 6 HOH B 72 772 166 HOH HOH . M 6 HOH B 73 773 59 HOH HOH . M 6 HOH B 74 774 149 HOH HOH . M 6 HOH B 75 775 13 HOH HOH . M 6 HOH B 76 776 12 HOH HOH . M 6 HOH B 77 777 82 HOH HOH . M 6 HOH B 78 778 21 HOH HOH . M 6 HOH B 79 779 181 HOH HOH . M 6 HOH B 80 780 4 HOH HOH . M 6 HOH B 81 781 84 HOH HOH . M 6 HOH B 82 782 148 HOH HOH . M 6 HOH B 83 783 100 HOH HOH . M 6 HOH B 84 784 92 HOH HOH . M 6 HOH B 85 785 225 HOH HOH . M 6 HOH B 86 786 165 HOH HOH . M 6 HOH B 87 787 143 HOH HOH . M 6 HOH B 88 788 132 HOH HOH . M 6 HOH B 89 789 118 HOH HOH . M 6 HOH B 90 790 145 HOH HOH . M 6 HOH B 91 791 110 HOH HOH . M 6 HOH B 92 792 180 HOH HOH . M 6 HOH B 93 793 146 HOH HOH . M 6 HOH B 94 794 142 HOH HOH . M 6 HOH B 95 795 109 HOH HOH . M 6 HOH B 96 796 50 HOH HOH . M 6 HOH B 97 797 186 HOH HOH . M 6 HOH B 98 798 131 HOH HOH . M 6 HOH B 99 799 220 HOH HOH . M 6 HOH B 100 800 219 HOH HOH . M 6 HOH B 101 801 197 HOH HOH . M 6 HOH B 102 802 223 HOH HOH . M 6 HOH B 103 803 194 HOH HOH . M 6 HOH B 104 804 161 HOH HOH . M 6 HOH B 105 805 206 HOH HOH . M 6 HOH B 106 806 193 HOH HOH . M 6 HOH B 107 807 205 HOH HOH . M 6 HOH B 108 808 185 HOH HOH . M 6 HOH B 109 809 167 HOH HOH . M 6 HOH B 110 810 169 HOH HOH . M 6 HOH B 111 811 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 URK . . . I 4 21.039 2.854 -24.373 1 65.18 ? C1 URK 604 B 1 HETATM 2 C C2 URK . . . I 4 20.142 3.893 -24.955 1 74.22 ? C2 URK 604 B 1 HETATM 3 C C3 URK . . . I 4 20.854 4.827 -25.892 1 79.38 ? C3 URK 604 B 1 HETATM 4 O O1 URK . . . I 4 20.961 4.303 -27.132 1 85.66 ? O1 URK 604 B 1 HETATM 5 C C4 URK . . . I 4 21.192 5.229 -28.225 1 94.44 ? C4 URK 604 B 1 HETATM 6 C C5 URK . . . I 4 21.8 4.462 -29.377 1 97.88 ? C5 URK 604 B 1 HETATM 7 C C6 URK . . . I 4 22.515 3.298 -29.131 1 97.42 ? C6 URK 604 B 1 HETATM 8 C C7 URK . . . I 4 23.067 2.568 -30.165 1 97.61 ? C7 URK 604 B 1 HETATM 9 C C8 URK . . . I 4 22.895 3.034 -31.464 1 99.71 ? C8 URK 604 B 1 HETATM 10 N N1 URK . . . I 4 23.452 2.26 -32.548 1 98.65 ? N1 URK 604 B 1 HETATM 11 O O2 URK . . . I 4 24.589 2.495 -32.914 1 90.16 ? O2 URK 604 B 1 HETATM 12 O O3 URK . . . I 4 22.756 1.386 -33.028 1 107.69 ? O3 URK 604 B 1 HETATM 13 C C9 URK . . . I 4 22.171 4.189 -31.75 1 99.89 ? C9 URK 604 B 1 HETATM 14 C C10 URK . . . I 4 21.638 4.898 -30.69 1 101.74 ? C10 URK 604 B 1 HETATM 15 C C11 URK . . . I 4 19.868 5.907 -28.652 1 88.41 ? C11 URK 604 B 1 HETATM 16 N N2 URK . . . I 4 19.947 7.212 -28.932 1 92.43 ? N2 URK 604 B 1 HETATM 17 C C12 URK . . . I 4 19.099 8.223 -28.295 1 98.23 ? C12 URK 604 B 1 HETATM 18 C C13 URK . . . I 4 18.212 9.029 -29.212 1 99.43 ? C13 URK 604 B 1 HETATM 19 C C14 URK . . . I 4 17.385 10.013 -28.662 1 102.59 ? C14 URK 604 B 1 HETATM 20 O O4 URK . . . I 4 17.428 10.204 -27.304 1 103.43 ? O4 URK 604 B 1 HETATM 21 C C15 URK . . . I 4 16.428 9.528 -26.54 1 95.7 ? C15 URK 604 B 1 HETATM 22 C C16 URK . . . I 4 16.537 10.784 -29.483 1 108.1 ? C16 URK 604 B 1 HETATM 23 O O5 URK . . . I 4 15.79 11.738 -28.834 1 110.78 ? O5 URK 604 B 1 HETATM 24 C C17 URK . . . I 4 14.39 11.823 -29.095 1 103.35 ? C17 URK 604 B 1 HETATM 25 C C18 URK . . . I 4 16.534 10.56 -30.849 1 101.05 ? C18 URK 604 B 1 HETATM 26 C C19 URK . . . I 4 17.341 9.58 -31.396 1 95.79 ? C19 URK 604 B 1 HETATM 27 C C20 URK . . . I 4 18.169 8.832 -30.59 1 98.14 ? C20 URK 604 B 1 HETATM 28 O O6 URK . . . I 4 18.842 5.231 -28.796 1 61.37 ? O6 URK 604 B 1 HETATM 29 O O7 URK . . . I 4 21.26 5.92 -25.595 1 81.72 ? O7 URK 604 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 29 #