data_7NT3 # _model_server_result.job_id 2MS8m08HNwnwP8kfr0JxwQ _model_server_result.datetime_utc '2024-10-19 03:39:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 7NT3 # _exptl.entry_id 7NT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NT3 _cell.length_a 68.005 _cell.length_b 101.348 _cell.length_c 103.982 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7NT3 _atom_sites.fract_transf_matrix[1][1] 0.014705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 601 601 DMS DMS . D 2 DMS B 1 701 701 DMS DMS . E 2 DMS B 1 702 901 DMS DMS . F 3 UQZ B 1 703 1001 UQZ F15 . G 2 DMS B 1 704 1101 DMS DMS . H 4 HOH A 1 701 36 HOH HOH . H 4 HOH A 2 702 111 HOH HOH . H 4 HOH A 3 703 97 HOH HOH . H 4 HOH A 4 704 85 HOH HOH . H 4 HOH A 5 705 31 HOH HOH . H 4 HOH A 6 706 139 HOH HOH . H 4 HOH A 7 707 65 HOH HOH . H 4 HOH A 8 708 122 HOH HOH . H 4 HOH A 9 709 64 HOH HOH . H 4 HOH A 10 710 27 HOH HOH . H 4 HOH A 11 711 62 HOH HOH . H 4 HOH A 12 712 112 HOH HOH . H 4 HOH A 13 713 125 HOH HOH . H 4 HOH A 14 714 78 HOH HOH . H 4 HOH A 15 715 55 HOH HOH . H 4 HOH A 16 716 17 HOH HOH . H 4 HOH A 17 717 51 HOH HOH . H 4 HOH A 18 718 60 HOH HOH . H 4 HOH A 19 719 143 HOH HOH . H 4 HOH A 20 720 47 HOH HOH . H 4 HOH A 21 721 7 HOH HOH . H 4 HOH A 22 722 69 HOH HOH . H 4 HOH A 23 723 25 HOH HOH . H 4 HOH A 24 724 74 HOH HOH . H 4 HOH A 25 725 11 HOH HOH . H 4 HOH A 26 726 37 HOH HOH . H 4 HOH A 27 727 81 HOH HOH . H 4 HOH A 28 728 34 HOH HOH . H 4 HOH A 29 729 42 HOH HOH . H 4 HOH A 30 730 28 HOH HOH . H 4 HOH A 31 731 38 HOH HOH . H 4 HOH A 32 732 68 HOH HOH . H 4 HOH A 33 733 43 HOH HOH . H 4 HOH A 34 734 102 HOH HOH . H 4 HOH A 35 735 8 HOH HOH . H 4 HOH A 36 736 24 HOH HOH . H 4 HOH A 37 737 67 HOH HOH . H 4 HOH A 38 738 157 HOH HOH . H 4 HOH A 39 739 104 HOH HOH . H 4 HOH A 40 740 5 HOH HOH . H 4 HOH A 41 741 114 HOH HOH . H 4 HOH A 42 742 77 HOH HOH . H 4 HOH A 43 743 1 HOH HOH . H 4 HOH A 44 744 115 HOH HOH . H 4 HOH A 45 745 101 HOH HOH . H 4 HOH A 46 746 113 HOH HOH . H 4 HOH A 47 747 173 HOH HOH . H 4 HOH A 48 748 142 HOH HOH . H 4 HOH A 49 749 138 HOH HOH . H 4 HOH A 50 750 137 HOH HOH . I 4 HOH B 1 801 172 HOH HOH . I 4 HOH B 2 802 167 HOH HOH . I 4 HOH B 3 803 39 HOH HOH . I 4 HOH B 4 804 57 HOH HOH . I 4 HOH B 5 805 136 HOH HOH . I 4 HOH B 6 806 119 HOH HOH . I 4 HOH B 7 807 154 HOH HOH . I 4 HOH B 8 808 127 HOH HOH . I 4 HOH B 9 809 148 HOH HOH . I 4 HOH B 10 810 134 HOH HOH . I 4 HOH B 11 811 166 HOH HOH . I 4 HOH B 12 812 116 HOH HOH . I 4 HOH B 13 813 83 HOH HOH . I 4 HOH B 14 814 35 HOH HOH . I 4 HOH B 15 815 160 HOH HOH . I 4 HOH B 16 816 22 HOH HOH . I 4 HOH B 17 817 174 HOH HOH . I 4 HOH B 18 818 120 HOH HOH . I 4 HOH B 19 819 76 HOH HOH . I 4 HOH B 20 820 88 HOH HOH . I 4 HOH B 21 821 107 HOH HOH . I 4 HOH B 22 822 90 HOH HOH . I 4 HOH B 23 823 149 HOH HOH . I 4 HOH B 24 824 44 HOH HOH . I 4 HOH B 25 825 155 HOH HOH . I 4 HOH B 26 826 162 HOH HOH . I 4 HOH B 27 827 95 HOH HOH . I 4 HOH B 28 828 30 HOH HOH . I 4 HOH B 29 829 16 HOH HOH . I 4 HOH B 30 830 79 HOH HOH . I 4 HOH B 31 831 46 HOH HOH . I 4 HOH B 32 832 156 HOH HOH . I 4 HOH B 33 833 135 HOH HOH . I 4 HOH B 34 834 9 HOH HOH . I 4 HOH B 35 835 66 HOH HOH . I 4 HOH B 36 836 49 HOH HOH . I 4 HOH B 37 837 170 HOH HOH . I 4 HOH B 38 838 12 HOH HOH . I 4 HOH B 39 839 93 HOH HOH . I 4 HOH B 40 840 86 HOH HOH . I 4 HOH B 41 841 145 HOH HOH . I 4 HOH B 42 842 23 HOH HOH . I 4 HOH B 43 843 133 HOH HOH . I 4 HOH B 44 844 32 HOH HOH . I 4 HOH B 45 845 18 HOH HOH . I 4 HOH B 46 846 144 HOH HOH . I 4 HOH B 47 847 121 HOH HOH . I 4 HOH B 48 848 53 HOH HOH . I 4 HOH B 49 849 84 HOH HOH . I 4 HOH B 50 850 52 HOH HOH . I 4 HOH B 51 851 82 HOH HOH . I 4 HOH B 52 852 161 HOH HOH . I 4 HOH B 53 853 58 HOH HOH . I 4 HOH B 54 854 21 HOH HOH . I 4 HOH B 55 855 72 HOH HOH . I 4 HOH B 56 856 168 HOH HOH . I 4 HOH B 57 857 159 HOH HOH . I 4 HOH B 58 858 171 HOH HOH . I 4 HOH B 59 859 71 HOH HOH . I 4 HOH B 60 860 13 HOH HOH . I 4 HOH B 61 861 153 HOH HOH . I 4 HOH B 62 862 19 HOH HOH . I 4 HOH B 63 863 117 HOH HOH . I 4 HOH B 64 864 169 HOH HOH . I 4 HOH B 65 865 132 HOH HOH . I 4 HOH B 66 866 164 HOH HOH . I 4 HOH B 67 867 4 HOH HOH . I 4 HOH B 68 868 151 HOH HOH . I 4 HOH B 69 869 109 HOH HOH . I 4 HOH B 70 870 130 HOH HOH . I 4 HOH B 71 871 158 HOH HOH . I 4 HOH B 72 872 131 HOH HOH . I 4 HOH B 73 873 150 HOH HOH . I 4 HOH B 74 874 110 HOH HOH . I 4 HOH B 75 875 50 HOH HOH . I 4 HOH B 76 876 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 2 25.395 -9.427 -37.552 1 127.46 ? S DMS 702 B 1 HETATM 2 O O DMS . . . E 2 24.463 -8.978 -38.636 1 124.58 ? O DMS 702 B 1 HETATM 3 C C1 DMS . . . E 2 27.029 -8.985 -38.104 1 126.05 ? C1 DMS 702 B 1 HETATM 4 C C2 DMS . . . E 2 25.54 -11.191 -37.722 1 124.85 ? C2 DMS 702 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #