data_7NTI # _model_server_result.job_id 898qPd2DreDt63pOCM_H7w _model_server_result.datetime_utc '2024-11-26 00:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 7NTI # _exptl.entry_id 7NTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NTI _cell.length_a 58.165 _cell.length_b 134.542 _cell.length_c 152.693 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7NTI _atom_sites.fract_transf_matrix[1][1] 0.017192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1001 1001 GOL GOL . C 2 GOL A 1 1002 1002 GOL GOL . D 2 GOL A 1 1003 1003 GOL GOL . E 2 GOL A 1 1004 1004 GOL GOL . F 2 GOL A 1 1005 1005 GOL GOL . G 3 DMS A 1 1006 1006 DMS DMS . H 3 DMS A 1 1007 1007 DMS DMS . I 4 UWZ A 1 1008 2001 UWZ MCC . J 5 HOH A 1 1101 9 HOH HOH . J 5 HOH A 2 1102 31 HOH HOH . J 5 HOH A 3 1103 25 HOH HOH . J 5 HOH A 4 1104 36 HOH HOH . J 5 HOH A 5 1105 69 HOH HOH . J 5 HOH A 6 1106 53 HOH HOH . J 5 HOH A 7 1107 35 HOH HOH . J 5 HOH A 8 1108 65 HOH HOH . J 5 HOH A 9 1109 3 HOH HOH . J 5 HOH A 10 1110 48 HOH HOH . J 5 HOH A 11 1111 81 HOH HOH . J 5 HOH A 12 1112 2 HOH HOH . J 5 HOH A 13 1113 13 HOH HOH . J 5 HOH A 14 1114 40 HOH HOH . J 5 HOH A 15 1115 30 HOH HOH . J 5 HOH A 16 1116 75 HOH HOH . J 5 HOH A 17 1117 6 HOH HOH . J 5 HOH A 18 1118 11 HOH HOH . J 5 HOH A 19 1119 45 HOH HOH . J 5 HOH A 20 1120 44 HOH HOH . J 5 HOH A 21 1121 73 HOH HOH . J 5 HOH A 22 1122 19 HOH HOH . J 5 HOH A 23 1123 21 HOH HOH . J 5 HOH A 24 1124 63 HOH HOH . J 5 HOH A 25 1125 26 HOH HOH . J 5 HOH A 26 1126 10 HOH HOH . J 5 HOH A 27 1127 66 HOH HOH . J 5 HOH A 28 1128 4 HOH HOH . J 5 HOH A 29 1129 29 HOH HOH . J 5 HOH A 30 1130 77 HOH HOH . J 5 HOH A 31 1131 82 HOH HOH . J 5 HOH A 32 1132 57 HOH HOH . J 5 HOH A 33 1133 22 HOH HOH . J 5 HOH A 34 1134 17 HOH HOH . J 5 HOH A 35 1135 8 HOH HOH . J 5 HOH A 36 1136 37 HOH HOH . J 5 HOH A 37 1137 16 HOH HOH . J 5 HOH A 38 1138 70 HOH HOH . J 5 HOH A 39 1139 12 HOH HOH . J 5 HOH A 40 1140 51 HOH HOH . J 5 HOH A 41 1141 80 HOH HOH . J 5 HOH A 42 1142 50 HOH HOH . J 5 HOH A 43 1143 18 HOH HOH . J 5 HOH A 44 1144 24 HOH HOH . J 5 HOH A 45 1145 34 HOH HOH . J 5 HOH A 46 1146 33 HOH HOH . J 5 HOH A 47 1147 71 HOH HOH . J 5 HOH A 48 1148 64 HOH HOH . J 5 HOH A 49 1149 1 HOH HOH . J 5 HOH A 50 1150 39 HOH HOH . J 5 HOH A 51 1151 15 HOH HOH . J 5 HOH A 52 1152 47 HOH HOH . J 5 HOH A 53 1153 54 HOH HOH . J 5 HOH A 54 1154 72 HOH HOH . J 5 HOH A 55 1155 27 HOH HOH . J 5 HOH A 56 1156 60 HOH HOH . J 5 HOH A 57 1157 49 HOH HOH . J 5 HOH A 58 1158 7 HOH HOH . J 5 HOH A 59 1159 42 HOH HOH . J 5 HOH A 60 1160 5 HOH HOH . J 5 HOH A 61 1161 67 HOH HOH . J 5 HOH A 62 1162 62 HOH HOH . J 5 HOH A 63 1163 23 HOH HOH . J 5 HOH A 64 1164 20 HOH HOH . J 5 HOH A 65 1165 79 HOH HOH . J 5 HOH A 66 1166 52 HOH HOH . J 5 HOH A 67 1167 43 HOH HOH . J 5 HOH A 68 1168 83 HOH HOH . J 5 HOH A 69 1169 38 HOH HOH . J 5 HOH A 70 1170 68 HOH HOH . J 5 HOH A 71 1171 78 HOH HOH . J 5 HOH A 72 1172 74 HOH HOH . J 5 HOH A 73 1173 41 HOH HOH . J 5 HOH A 74 1174 32 HOH HOH . J 5 HOH A 75 1175 55 HOH HOH . J 5 HOH A 76 1176 46 HOH HOH . J 5 HOH A 77 1177 14 HOH HOH . J 5 HOH A 78 1178 59 HOH HOH . J 5 HOH A 79 1179 76 HOH HOH . J 5 HOH A 80 1180 84 HOH HOH . J 5 HOH A 81 1181 61 HOH HOH . J 5 HOH A 82 1182 56 HOH HOH . J 5 HOH A 83 1183 28 HOH HOH . J 5 HOH A 84 1184 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 31.1 33.321 51.307 1 76.91 ? C1 GOL 1004 A 1 HETATM 2 O O1 GOL . . . E 2 32.241 32.83 52.036 1 74.3 ? O1 GOL 1004 A 1 HETATM 3 C C2 GOL . . . E 2 30.476 34.643 51.816 1 81.64 ? C2 GOL 1004 A 1 HETATM 4 O O2 GOL . . . E 2 29.912 35.332 50.694 1 87.97 ? O2 GOL 1004 A 1 HETATM 5 C C3 GOL . . . E 2 29.384 34.478 52.886 1 71.73 ? C3 GOL 1004 A 1 HETATM 6 O O3 GOL . . . E 2 28.571 35.62 53.167 1 75.15 ? O3 GOL 1004 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #