data_7NTQ # _model_server_result.job_id lNNfZJNCHCDhfRL6QqK6Xw _model_server_result.datetime_utc '2024-11-16 08:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ntq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":416}' # _entry.id 7NTQ # _exptl.entry_id 7NTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.88 _cell.angle_gamma 90 _cell.entry_id 7NTQ _cell.length_a 114.92 _cell.length_b 52.91 _cell.length_c 44.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 B CAJ 35J . A 35J 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc1 A O LEU 115 A LEU 115 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A O PHE 134 A PHE 134 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 A O GLY 174 A GLY 174 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc4 A O TYR 182 A TYR 182 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc5 A O ASN 203 A ASN 203 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc6 A O GLU 288 A GLU 288 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc7 A O PHE 291 A PHE 291 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 101 n n S C1 DMS sing 102 n n S C2 DMS sing 103 n n C1 H11 DMS sing 104 n n C1 H12 DMS sing 105 n n C1 H13 DMS sing 106 n n C2 H21 DMS sing 107 n n C2 H22 DMS sing 108 n n C2 H23 DMS sing 109 n n # _atom_sites.entry_id 7NTQ _atom_sites.fract_transf_matrix[1][1] 0.008702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00199 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 35J A 1 401 401 35J 35J . C 3 NA A 1 402 1 NA NA . D 3 NA A 1 403 2 NA NA . E 3 NA A 1 404 3 NA NA . F 4 FMT A 1 405 1 FMT FMT . G 4 FMT A 1 406 2 FMT FMT . H 4 FMT A 1 407 3 FMT FMT . I 4 FMT A 1 408 4 FMT FMT . J 4 FMT A 1 409 5 FMT FMT . K 4 FMT A 1 410 6 FMT FMT . L 4 FMT A 1 411 7 FMT FMT . M 5 DMS A 1 412 1 DMS DMS . N 5 DMS A 1 413 2 DMS DMS . O 5 DMS A 1 414 3 DMS DMS . P 5 DMS A 1 415 4 DMS DMS . Q 5 DMS A 1 416 5 DMS DMS . R 6 HOH A 1 501 183 HOH HOH . R 6 HOH A 2 502 181 HOH HOH . R 6 HOH A 3 503 185 HOH HOH . R 6 HOH A 4 504 197 HOH HOH . R 6 HOH A 5 505 200 HOH HOH . R 6 HOH A 6 506 157 HOH HOH . R 6 HOH A 7 507 167 HOH HOH . R 6 HOH A 8 508 86 HOH HOH . R 6 HOH A 9 509 117 HOH HOH . R 6 HOH A 10 510 129 HOH HOH . R 6 HOH A 11 511 135 HOH HOH . R 6 HOH A 12 512 156 HOH HOH . R 6 HOH A 13 513 97 HOH HOH . R 6 HOH A 14 514 82 HOH HOH . R 6 HOH A 15 515 100 HOH HOH . R 6 HOH A 16 516 53 HOH HOH . R 6 HOH A 17 517 39 HOH HOH . R 6 HOH A 18 518 5 HOH HOH . R 6 HOH A 19 519 192 HOH HOH . R 6 HOH A 20 520 38 HOH HOH . R 6 HOH A 21 521 30 HOH HOH . R 6 HOH A 22 522 142 HOH HOH . R 6 HOH A 23 523 124 HOH HOH . R 6 HOH A 24 524 152 HOH HOH . R 6 HOH A 25 525 66 HOH HOH . R 6 HOH A 26 526 102 HOH HOH . R 6 HOH A 27 527 179 HOH HOH . R 6 HOH A 28 528 81 HOH HOH . R 6 HOH A 29 529 173 HOH HOH . R 6 HOH A 30 530 29 HOH HOH . R 6 HOH A 31 531 67 HOH HOH . R 6 HOH A 32 532 194 HOH HOH . R 6 HOH A 33 533 10 HOH HOH . R 6 HOH A 34 534 143 HOH HOH . R 6 HOH A 35 535 123 HOH HOH . R 6 HOH A 36 536 175 HOH HOH . R 6 HOH A 37 537 119 HOH HOH . R 6 HOH A 38 538 214 HOH HOH . R 6 HOH A 39 539 171 HOH HOH . R 6 HOH A 40 540 206 HOH HOH . R 6 HOH A 41 541 63 HOH HOH . R 6 HOH A 42 542 74 HOH HOH . R 6 HOH A 43 543 126 HOH HOH . R 6 HOH A 44 544 94 HOH HOH . R 6 HOH A 45 545 83 HOH HOH . R 6 HOH A 46 546 80 HOH HOH . R 6 HOH A 47 547 147 HOH HOH . R 6 HOH A 48 548 93 HOH HOH . R 6 HOH A 49 549 210 HOH HOH . R 6 HOH A 50 550 161 HOH HOH . R 6 HOH A 51 551 98 HOH HOH . R 6 HOH A 52 552 189 HOH HOH . R 6 HOH A 53 553 69 HOH HOH . R 6 HOH A 54 554 16 HOH HOH . R 6 HOH A 55 555 17 HOH HOH . R 6 HOH A 56 556 41 HOH HOH . R 6 HOH A 57 557 138 HOH HOH . R 6 HOH A 58 558 55 HOH HOH . R 6 HOH A 59 559 193 HOH HOH . R 6 HOH A 60 560 158 HOH HOH . R 6 HOH A 61 561 154 HOH HOH . R 6 HOH A 62 562 139 HOH HOH . R 6 HOH A 63 563 35 HOH HOH . R 6 HOH A 64 564 7 HOH HOH . R 6 HOH A 65 565 108 HOH HOH . R 6 HOH A 66 566 107 HOH HOH . R 6 HOH A 67 567 153 HOH HOH . R 6 HOH A 68 568 50 HOH HOH . R 6 HOH A 69 569 56 HOH HOH . R 6 HOH A 70 570 137 HOH HOH . R 6 HOH A 71 571 23 HOH HOH . R 6 HOH A 72 572 6 HOH HOH . R 6 HOH A 73 573 54 HOH HOH . R 6 HOH A 74 574 73 HOH HOH . R 6 HOH A 75 575 145 HOH HOH . R 6 HOH A 76 576 78 HOH HOH . R 6 HOH A 77 577 89 HOH HOH . R 6 HOH A 78 578 151 HOH HOH . R 6 HOH A 79 579 191 HOH HOH . R 6 HOH A 80 580 20 HOH HOH . R 6 HOH A 81 581 2 HOH HOH . R 6 HOH A 82 582 15 HOH HOH . R 6 HOH A 83 583 27 HOH HOH . R 6 HOH A 84 584 110 HOH HOH . R 6 HOH A 85 585 104 HOH HOH . R 6 HOH A 86 586 24 HOH HOH . R 6 HOH A 87 587 90 HOH HOH . R 6 HOH A 88 588 140 HOH HOH . R 6 HOH A 89 589 19 HOH HOH . R 6 HOH A 90 590 72 HOH HOH . R 6 HOH A 91 591 148 HOH HOH . R 6 HOH A 92 592 3 HOH HOH . R 6 HOH A 93 593 88 HOH HOH . R 6 HOH A 94 594 149 HOH HOH . R 6 HOH A 95 595 144 HOH HOH . R 6 HOH A 96 596 125 HOH HOH . R 6 HOH A 97 597 34 HOH HOH . R 6 HOH A 98 598 25 HOH HOH . R 6 HOH A 99 599 1 HOH HOH . R 6 HOH A 100 600 103 HOH HOH . R 6 HOH A 101 601 26 HOH HOH . R 6 HOH A 102 602 170 HOH HOH . R 6 HOH A 103 603 48 HOH HOH . R 6 HOH A 104 604 168 HOH HOH . R 6 HOH A 105 605 166 HOH HOH . R 6 HOH A 106 606 70 HOH HOH . R 6 HOH A 107 607 59 HOH HOH . R 6 HOH A 108 608 132 HOH HOH . R 6 HOH A 109 609 84 HOH HOH . R 6 HOH A 110 610 42 HOH HOH . R 6 HOH A 111 611 43 HOH HOH . R 6 HOH A 112 612 127 HOH HOH . R 6 HOH A 113 613 33 HOH HOH . R 6 HOH A 114 614 12 HOH HOH . R 6 HOH A 115 615 101 HOH HOH . R 6 HOH A 116 616 13 HOH HOH . R 6 HOH A 117 617 22 HOH HOH . R 6 HOH A 118 618 114 HOH HOH . R 6 HOH A 119 619 28 HOH HOH . R 6 HOH A 120 620 61 HOH HOH . R 6 HOH A 121 621 128 HOH HOH . R 6 HOH A 122 622 64 HOH HOH . R 6 HOH A 123 623 202 HOH HOH . R 6 HOH A 124 624 116 HOH HOH . R 6 HOH A 125 625 76 HOH HOH . R 6 HOH A 126 626 141 HOH HOH . R 6 HOH A 127 627 195 HOH HOH . R 6 HOH A 128 628 133 HOH HOH . R 6 HOH A 129 629 112 HOH HOH . R 6 HOH A 130 630 49 HOH HOH . R 6 HOH A 131 631 9 HOH HOH . R 6 HOH A 132 632 44 HOH HOH . R 6 HOH A 133 633 120 HOH HOH . R 6 HOH A 134 634 77 HOH HOH . R 6 HOH A 135 635 96 HOH HOH . R 6 HOH A 136 636 14 HOH HOH . R 6 HOH A 137 637 209 HOH HOH . R 6 HOH A 138 638 65 HOH HOH . R 6 HOH A 139 639 60 HOH HOH . R 6 HOH A 140 640 105 HOH HOH . R 6 HOH A 141 641 106 HOH HOH . R 6 HOH A 142 642 58 HOH HOH . R 6 HOH A 143 643 216 HOH HOH . R 6 HOH A 144 644 68 HOH HOH . R 6 HOH A 145 645 159 HOH HOH . R 6 HOH A 146 646 57 HOH HOH . R 6 HOH A 147 647 40 HOH HOH . R 6 HOH A 148 648 18 HOH HOH . R 6 HOH A 149 649 176 HOH HOH . R 6 HOH A 150 650 162 HOH HOH . R 6 HOH A 151 651 71 HOH HOH . R 6 HOH A 152 652 187 HOH HOH . R 6 HOH A 153 653 134 HOH HOH . R 6 HOH A 154 654 130 HOH HOH . R 6 HOH A 155 655 155 HOH HOH . R 6 HOH A 156 656 177 HOH HOH . R 6 HOH A 157 657 136 HOH HOH . R 6 HOH A 158 658 87 HOH HOH . R 6 HOH A 159 659 75 HOH HOH . R 6 HOH A 160 660 37 HOH HOH . R 6 HOH A 161 661 45 HOH HOH . R 6 HOH A 162 662 21 HOH HOH . R 6 HOH A 163 663 51 HOH HOH . R 6 HOH A 164 664 122 HOH HOH . R 6 HOH A 165 665 121 HOH HOH . R 6 HOH A 166 666 11 HOH HOH . R 6 HOH A 167 667 8 HOH HOH . R 6 HOH A 168 668 31 HOH HOH . R 6 HOH A 169 669 208 HOH HOH . R 6 HOH A 170 670 164 HOH HOH . R 6 HOH A 171 671 92 HOH HOH . R 6 HOH A 172 672 131 HOH HOH . R 6 HOH A 173 673 174 HOH HOH . R 6 HOH A 174 674 79 HOH HOH . R 6 HOH A 175 675 182 HOH HOH . R 6 HOH A 176 676 47 HOH HOH . R 6 HOH A 177 677 32 HOH HOH . R 6 HOH A 178 678 203 HOH HOH . R 6 HOH A 179 679 165 HOH HOH . R 6 HOH A 180 680 118 HOH HOH . R 6 HOH A 181 681 160 HOH HOH . R 6 HOH A 182 682 111 HOH HOH . R 6 HOH A 183 683 199 HOH HOH . R 6 HOH A 184 684 211 HOH HOH . R 6 HOH A 185 685 163 HOH HOH . R 6 HOH A 186 686 150 HOH HOH . R 6 HOH A 187 687 113 HOH HOH . R 6 HOH A 188 688 205 HOH HOH . R 6 HOH A 189 689 180 HOH HOH . R 6 HOH A 190 690 207 HOH HOH . R 6 HOH A 191 691 109 HOH HOH . R 6 HOH A 192 692 204 HOH HOH . R 6 HOH A 193 693 91 HOH HOH . R 6 HOH A 194 694 213 HOH HOH . R 6 HOH A 195 695 36 HOH HOH . R 6 HOH A 196 696 146 HOH HOH . R 6 HOH A 197 697 4 HOH HOH . R 6 HOH A 198 698 196 HOH HOH . R 6 HOH A 199 699 212 HOH HOH . R 6 HOH A 200 700 52 HOH HOH . R 6 HOH A 201 701 190 HOH HOH . R 6 HOH A 202 702 46 HOH HOH . R 6 HOH A 203 703 186 HOH HOH . R 6 HOH A 204 704 184 HOH HOH . R 6 HOH A 205 705 62 HOH HOH . R 6 HOH A 206 706 115 HOH HOH . R 6 HOH A 207 707 215 HOH HOH . R 6 HOH A 208 708 169 HOH HOH . R 6 HOH A 209 709 178 HOH HOH . R 6 HOH A 210 710 99 HOH HOH . R 6 HOH A 211 711 172 HOH HOH . R 6 HOH A 212 712 85 HOH HOH . R 6 HOH A 213 713 198 HOH HOH . R 6 HOH A 214 714 201 HOH HOH . R 6 HOH A 215 715 188 HOH HOH . R 6 HOH A 216 716 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . Q 5 25.92 -11.409 35.651 1 58.82 0 S DMS 416 A 1 HETATM 2 O O DMS . . . Q 5 26.14 -12.51 34.635 1 57.56 0 O DMS 416 A 1 HETATM 3 C C1 DMS . . . Q 5 26.517 -12.06 37.199 1 53.26 0 C1 DMS 416 A 1 HETATM 4 C C2 DMS . . . Q 5 24.188 -11.404 36.046 1 57.71 0 C2 DMS 416 A 1 HETATM 5 H H11 DMS . . . Q 5 26.385 -11.403 37.896 1 53.26 0 H11 DMS 416 A 1 HETATM 6 H H12 DMS . . . Q 5 27.459 -12.263 37.12 1 53.26 0 H12 DMS 416 A 1 HETATM 7 H H13 DMS . . . Q 5 26.029 -12.866 37.418 1 53.26 0 H13 DMS 416 A 1 HETATM 8 H H21 DMS . . . Q 5 24.007 -10.701 36.685 1 57.71 0 H21 DMS 416 A 1 HETATM 9 H H22 DMS . . . Q 5 23.943 -12.256 36.427 1 57.71 0 H22 DMS 416 A 1 HETATM 10 H H23 DMS . . . Q 5 23.677 -11.247 35.241 1 57.71 0 H23 DMS 416 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #