data_7NTW # _model_server_result.job_id EHjUtcWdV25sq6qHCeNbuQ _model_server_result.datetime_utc '2024-11-21 09:06:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ntw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7NTW # _exptl.entry_id 7NTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.67 _cell.angle_gamma 90 _cell.entry_id 7NTW _cell.length_a 113.31 _cell.length_b 53.68 _cell.length_c 44.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A O LEU 115 A LEU 115 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 A O PHE 134 A PHE 134 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc4 A SG CYS 145 A CYS 145 1_555 L ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 A O GLY 174 A GLY 174 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? metalc ? metalc6 A O TYR 182 A TYR 182 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc7 A OD2 ASP 187 A ASP 187 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc8 L ZN ZN . A ZN 411 1_555 M O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc9 L ZN ZN . A ZN 411 1_555 M O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NTW _atom_sites.fract_transf_matrix[1][1] 0.008825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 401 NA NA . C 2 NA A 1 402 402 NA NA . D 2 NA A 1 403 403 NA NA . E 3 DMS A 1 404 404 DMS DMS . F 3 DMS A 1 405 405 DMS DMS . G 4 FMT A 1 406 406 FMT FMT . H 4 FMT A 1 407 407 FMT FMT . I 4 FMT A 1 408 408 FMT FMT . J 4 FMT A 1 409 409 FMT FMT . K 4 FMT A 1 410 410 FMT FMT . L 5 ZN A 1 411 411 ZN ZN . M 6 HOH A 1 501 501 HOH HOH . M 6 HOH A 2 502 502 HOH HOH . M 6 HOH A 3 503 503 HOH HOH . M 6 HOH A 4 504 504 HOH HOH . M 6 HOH A 5 505 505 HOH HOH . M 6 HOH A 6 506 506 HOH HOH . M 6 HOH A 7 507 507 HOH HOH . M 6 HOH A 8 508 508 HOH HOH . M 6 HOH A 9 509 509 HOH HOH . M 6 HOH A 10 510 510 HOH HOH . M 6 HOH A 11 511 511 HOH HOH . M 6 HOH A 12 512 512 HOH HOH . M 6 HOH A 13 513 513 HOH HOH . M 6 HOH A 14 514 514 HOH HOH . M 6 HOH A 15 515 515 HOH HOH . M 6 HOH A 16 516 516 HOH HOH . M 6 HOH A 17 517 517 HOH HOH . M 6 HOH A 18 518 518 HOH HOH . M 6 HOH A 19 519 519 HOH HOH . M 6 HOH A 20 520 520 HOH HOH . M 6 HOH A 21 521 521 HOH HOH . M 6 HOH A 22 522 522 HOH HOH . M 6 HOH A 23 523 523 HOH HOH . M 6 HOH A 24 524 524 HOH HOH . M 6 HOH A 25 525 525 HOH HOH . M 6 HOH A 26 526 526 HOH HOH . M 6 HOH A 27 527 527 HOH HOH . M 6 HOH A 28 528 528 HOH HOH . M 6 HOH A 29 529 529 HOH HOH . M 6 HOH A 30 530 530 HOH HOH . M 6 HOH A 31 531 531 HOH HOH . M 6 HOH A 32 532 532 HOH HOH . M 6 HOH A 33 533 533 HOH HOH . M 6 HOH A 34 534 534 HOH HOH . M 6 HOH A 35 535 535 HOH HOH . M 6 HOH A 36 536 536 HOH HOH . M 6 HOH A 37 537 537 HOH HOH . M 6 HOH A 38 538 538 HOH HOH . M 6 HOH A 39 539 539 HOH HOH . M 6 HOH A 40 540 540 HOH HOH . M 6 HOH A 41 541 541 HOH HOH . M 6 HOH A 42 542 542 HOH HOH . M 6 HOH A 43 543 543 HOH HOH . M 6 HOH A 44 544 544 HOH HOH . M 6 HOH A 45 545 545 HOH HOH . M 6 HOH A 46 546 546 HOH HOH . M 6 HOH A 47 547 547 HOH HOH . M 6 HOH A 48 548 548 HOH HOH . M 6 HOH A 49 549 549 HOH HOH . M 6 HOH A 50 550 550 HOH HOH . M 6 HOH A 51 551 551 HOH HOH . M 6 HOH A 52 552 552 HOH HOH . M 6 HOH A 53 553 553 HOH HOH . M 6 HOH A 54 554 554 HOH HOH . M 6 HOH A 55 555 555 HOH HOH . M 6 HOH A 56 556 556 HOH HOH . M 6 HOH A 57 557 557 HOH HOH . M 6 HOH A 58 558 558 HOH HOH . M 6 HOH A 59 559 559 HOH HOH . M 6 HOH A 60 560 560 HOH HOH . M 6 HOH A 61 561 561 HOH HOH . M 6 HOH A 62 562 562 HOH HOH . M 6 HOH A 63 563 563 HOH HOH . M 6 HOH A 64 564 564 HOH HOH . M 6 HOH A 65 565 565 HOH HOH . M 6 HOH A 66 566 566 HOH HOH . M 6 HOH A 67 567 567 HOH HOH . M 6 HOH A 68 568 568 HOH HOH . M 6 HOH A 69 569 569 HOH HOH . M 6 HOH A 70 570 570 HOH HOH . M 6 HOH A 71 571 571 HOH HOH . M 6 HOH A 72 572 572 HOH HOH . M 6 HOH A 73 573 573 HOH HOH . M 6 HOH A 74 574 574 HOH HOH . M 6 HOH A 75 575 575 HOH HOH . M 6 HOH A 76 576 576 HOH HOH . M 6 HOH A 77 577 577 HOH HOH . M 6 HOH A 78 578 578 HOH HOH . M 6 HOH A 79 579 579 HOH HOH . M 6 HOH A 80 580 580 HOH HOH . M 6 HOH A 81 581 581 HOH HOH . M 6 HOH A 82 582 582 HOH HOH . M 6 HOH A 83 583 583 HOH HOH . M 6 HOH A 84 584 584 HOH HOH . M 6 HOH A 85 585 585 HOH HOH . M 6 HOH A 86 586 586 HOH HOH . M 6 HOH A 87 587 587 HOH HOH . M 6 HOH A 88 588 588 HOH HOH . M 6 HOH A 89 589 589 HOH HOH . M 6 HOH A 90 590 590 HOH HOH . M 6 HOH A 91 591 591 HOH HOH . M 6 HOH A 92 592 592 HOH HOH . M 6 HOH A 93 593 593 HOH HOH . M 6 HOH A 94 594 594 HOH HOH . M 6 HOH A 95 595 595 HOH HOH . M 6 HOH A 96 596 596 HOH HOH . M 6 HOH A 97 597 597 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.706 _atom_site.Cartn_y 2.631 _atom_site.Cartn_z 11.871 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.89 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #