data_7NU7 # _model_server_result.job_id SVmullDD6-FBRVmCW15-Ig _model_server_result.datetime_utc '2025-04-06 10:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 7NU7 # _exptl.entry_id 7NU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NU7 _cell.length_a 49.141 _cell.length_b 82.728 _cell.length_c 228.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 E ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 F MG MG . A MG 1005 1_555 G O HOH . A HOH 1197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 F MG MG . A MG 1005 1_555 G O HOH . A HOH 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7NU7 _atom_sites.fract_transf_matrix[1][1] 0.02035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1001 1001 EDO EDO . C 3 ATP A 1 1002 1101 ATP ATP . D 3 ATP A 1 1003 1201 ATP ATP . E 4 ZN A 1 1004 1 ZN ZN . F 5 MG A 1 1005 1 MG MG . G 6 HOH A 1 1101 21 HOH HOH . G 6 HOH A 2 1102 80 HOH HOH . G 6 HOH A 3 1103 63 HOH HOH . G 6 HOH A 4 1104 88 HOH HOH . G 6 HOH A 5 1105 1 HOH HOH . G 6 HOH A 6 1106 51 HOH HOH . G 6 HOH A 7 1107 50 HOH HOH . G 6 HOH A 8 1108 170 HOH HOH . G 6 HOH A 9 1109 49 HOH HOH . G 6 HOH A 10 1110 59 HOH HOH . G 6 HOH A 11 1111 32 HOH HOH . G 6 HOH A 12 1112 146 HOH HOH . G 6 HOH A 13 1113 22 HOH HOH . G 6 HOH A 14 1114 57 HOH HOH . G 6 HOH A 15 1115 165 HOH HOH . G 6 HOH A 16 1116 74 HOH HOH . G 6 HOH A 17 1117 124 HOH HOH . G 6 HOH A 18 1118 3 HOH HOH . G 6 HOH A 19 1119 33 HOH HOH . G 6 HOH A 20 1120 5 HOH HOH . G 6 HOH A 21 1121 68 HOH HOH . G 6 HOH A 22 1122 29 HOH HOH . G 6 HOH A 23 1123 67 HOH HOH . G 6 HOH A 24 1124 37 HOH HOH . G 6 HOH A 25 1125 8 HOH HOH . G 6 HOH A 26 1126 133 HOH HOH . G 6 HOH A 27 1127 69 HOH HOH . G 6 HOH A 28 1128 108 HOH HOH . G 6 HOH A 29 1129 61 HOH HOH . G 6 HOH A 30 1130 26 HOH HOH . G 6 HOH A 31 1131 177 HOH HOH . G 6 HOH A 32 1132 105 HOH HOH . G 6 HOH A 33 1133 119 HOH HOH . G 6 HOH A 34 1134 43 HOH HOH . G 6 HOH A 35 1135 71 HOH HOH . G 6 HOH A 36 1136 103 HOH HOH . G 6 HOH A 37 1137 16 HOH HOH . G 6 HOH A 38 1138 31 HOH HOH . G 6 HOH A 39 1139 148 HOH HOH . G 6 HOH A 40 1140 36 HOH HOH . G 6 HOH A 41 1141 87 HOH HOH . G 6 HOH A 42 1142 25 HOH HOH . G 6 HOH A 43 1143 98 HOH HOH . G 6 HOH A 44 1144 109 HOH HOH . G 6 HOH A 45 1145 41 HOH HOH . G 6 HOH A 46 1146 65 HOH HOH . G 6 HOH A 47 1147 46 HOH HOH . G 6 HOH A 48 1148 4 HOH HOH . G 6 HOH A 49 1149 18 HOH HOH . G 6 HOH A 50 1150 35 HOH HOH . G 6 HOH A 51 1151 15 HOH HOH . G 6 HOH A 52 1152 149 HOH HOH . G 6 HOH A 53 1153 19 HOH HOH . G 6 HOH A 54 1154 152 HOH HOH . G 6 HOH A 55 1155 72 HOH HOH . G 6 HOH A 56 1156 60 HOH HOH . G 6 HOH A 57 1157 73 HOH HOH . G 6 HOH A 58 1158 30 HOH HOH . G 6 HOH A 59 1159 102 HOH HOH . G 6 HOH A 60 1160 168 HOH HOH . G 6 HOH A 61 1161 44 HOH HOH . G 6 HOH A 62 1162 45 HOH HOH . G 6 HOH A 63 1163 64 HOH HOH . G 6 HOH A 64 1164 157 HOH HOH . G 6 HOH A 65 1165 115 HOH HOH . G 6 HOH A 66 1166 114 HOH HOH . G 6 HOH A 67 1167 141 HOH HOH . G 6 HOH A 68 1168 13 HOH HOH . G 6 HOH A 69 1169 58 HOH HOH . G 6 HOH A 70 1170 172 HOH HOH . G 6 HOH A 71 1171 126 HOH HOH . G 6 HOH A 72 1172 42 HOH HOH . G 6 HOH A 73 1173 100 HOH HOH . G 6 HOH A 74 1174 125 HOH HOH . G 6 HOH A 75 1175 121 HOH HOH . G 6 HOH A 76 1176 54 HOH HOH . G 6 HOH A 77 1177 38 HOH HOH . G 6 HOH A 78 1178 17 HOH HOH . G 6 HOH A 79 1179 12 HOH HOH . G 6 HOH A 80 1180 78 HOH HOH . G 6 HOH A 81 1181 136 HOH HOH . G 6 HOH A 82 1182 7 HOH HOH . G 6 HOH A 83 1183 161 HOH HOH . G 6 HOH A 84 1184 104 HOH HOH . G 6 HOH A 85 1185 27 HOH HOH . G 6 HOH A 86 1186 91 HOH HOH . G 6 HOH A 87 1187 2 HOH HOH . G 6 HOH A 88 1188 163 HOH HOH . G 6 HOH A 89 1189 166 HOH HOH . G 6 HOH A 90 1190 147 HOH HOH . G 6 HOH A 91 1191 145 HOH HOH . G 6 HOH A 92 1192 84 HOH HOH . G 6 HOH A 93 1193 182 HOH HOH . G 6 HOH A 94 1194 48 HOH HOH . G 6 HOH A 95 1195 14 HOH HOH . G 6 HOH A 96 1196 52 HOH HOH . G 6 HOH A 97 1197 181 HOH HOH . G 6 HOH A 98 1198 112 HOH HOH . G 6 HOH A 99 1199 128 HOH HOH . G 6 HOH A 100 1200 132 HOH HOH . G 6 HOH A 101 1201 143 HOH HOH . G 6 HOH A 102 1202 6 HOH HOH . G 6 HOH A 103 1203 159 HOH HOH . G 6 HOH A 104 1204 39 HOH HOH . G 6 HOH A 105 1205 77 HOH HOH . G 6 HOH A 106 1206 158 HOH HOH . G 6 HOH A 107 1207 139 HOH HOH . G 6 HOH A 108 1208 47 HOH HOH . G 6 HOH A 109 1209 142 HOH HOH . G 6 HOH A 110 1210 20 HOH HOH . G 6 HOH A 111 1211 40 HOH HOH . G 6 HOH A 112 1212 23 HOH HOH . G 6 HOH A 113 1213 53 HOH HOH . G 6 HOH A 114 1214 131 HOH HOH . G 6 HOH A 115 1215 138 HOH HOH . G 6 HOH A 116 1216 9 HOH HOH . G 6 HOH A 117 1217 62 HOH HOH . G 6 HOH A 118 1218 160 HOH HOH . G 6 HOH A 119 1219 89 HOH HOH . G 6 HOH A 120 1220 34 HOH HOH . G 6 HOH A 121 1221 66 HOH HOH . G 6 HOH A 122 1222 75 HOH HOH . G 6 HOH A 123 1223 92 HOH HOH . G 6 HOH A 124 1224 10 HOH HOH . G 6 HOH A 125 1225 28 HOH HOH . G 6 HOH A 126 1226 94 HOH HOH . G 6 HOH A 127 1227 11 HOH HOH . G 6 HOH A 128 1228 113 HOH HOH . G 6 HOH A 129 1229 56 HOH HOH . G 6 HOH A 130 1230 178 HOH HOH . G 6 HOH A 131 1231 99 HOH HOH . G 6 HOH A 132 1232 171 HOH HOH . G 6 HOH A 133 1233 167 HOH HOH . G 6 HOH A 134 1234 162 HOH HOH . G 6 HOH A 135 1235 150 HOH HOH . G 6 HOH A 136 1236 110 HOH HOH . G 6 HOH A 137 1237 96 HOH HOH . G 6 HOH A 138 1238 117 HOH HOH . G 6 HOH A 139 1239 175 HOH HOH . G 6 HOH A 140 1240 129 HOH HOH . G 6 HOH A 141 1241 176 HOH HOH . G 6 HOH A 142 1242 179 HOH HOH . G 6 HOH A 143 1243 180 HOH HOH . G 6 HOH A 144 1244 174 HOH HOH . G 6 HOH A 145 1245 24 HOH HOH . G 6 HOH A 146 1246 164 HOH HOH . G 6 HOH A 147 1247 107 HOH HOH . G 6 HOH A 148 1248 169 HOH HOH . G 6 HOH A 149 1249 120 HOH HOH . G 6 HOH A 150 1250 173 HOH HOH . G 6 HOH A 151 1251 137 HOH HOH . G 6 HOH A 152 1252 101 HOH HOH . G 6 HOH A 153 1253 70 HOH HOH . G 6 HOH A 154 1254 153 HOH HOH . G 6 HOH A 155 1255 122 HOH HOH . G 6 HOH A 156 1256 140 HOH HOH . G 6 HOH A 157 1257 55 HOH HOH . G 6 HOH A 158 1258 86 HOH HOH . G 6 HOH A 159 1259 154 HOH HOH . G 6 HOH A 160 1260 155 HOH HOH . G 6 HOH A 161 1261 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -15.127 27.299 -26.551 1 169.84 ? PG ATP 1003 A 1 HETATM 2 O O1G ATP . . . D 3 -15.935 26.171 -27.1 1 170.34 ? O1G ATP 1003 A 1 HETATM 3 O O2G ATP . . . D 3 -15.445 27.602 -25.083 1 170.87 ? O2G ATP 1003 A 1 HETATM 4 O O3G ATP . . . D 3 -15.297 28.598 -27.348 1 168.69 ? O3G ATP 1003 A 1 HETATM 5 P PB ATP . . . D 3 -12.738 25.629 -26.295 1 155.69 ? PB ATP 1003 A 1 HETATM 6 O O1B ATP . . . D 3 -13.252 24.919 -25.103 1 154.29 ? O1B ATP 1003 A 1 HETATM 7 O O2B ATP . . . D 3 -12.694 24.815 -27.588 1 157.34 ? O2B ATP 1003 A 1 HETATM 8 O O3B ATP . . . D 3 -13.571 26.951 -26.602 1 164.74 ? O3B ATP 1003 A 1 HETATM 9 P PA ATP . . . D 3 -10.281 26.18 -24.809 1 132.91 ? PA ATP 1003 A 1 HETATM 10 O O1A ATP . . . D 3 -8.878 26.003 -25.241 1 131.86 ? O1A ATP 1003 A 1 HETATM 11 O O2A ATP . . . D 3 -10.794 25.102 -23.856 1 132.97 ? O2A ATP 1003 A 1 HETATM 12 O O3A ATP . . . D 3 -11.274 26.208 -26.054 1 145.33 ? O3A ATP 1003 A 1 HETATM 13 O O5' ATP . . . D 3 -10.504 27.601 -24.069 1 122.08 ? O5' ATP 1003 A 1 HETATM 14 C C5' ATP . . . D 3 -11.817 28.034 -23.662 1 110.38 ? C5' ATP 1003 A 1 HETATM 15 C C4' ATP . . . D 3 -11.702 28.975 -22.489 1 100.1 ? C4' ATP 1003 A 1 HETATM 16 O O4' ATP . . . D 3 -10.848 28.404 -21.48 1 100.39 ? O4' ATP 1003 A 1 HETATM 17 C C3' ATP . . . D 3 -11.071 30.329 -22.775 1 87.94 ? C3' ATP 1003 A 1 HETATM 18 O O3' ATP . . . D 3 -12.019 31.232 -23.333 1 70.27 ? O3' ATP 1003 A 1 HETATM 19 C C2' ATP . . . D 3 -10.621 30.781 -21.38 1 89.63 ? C2' ATP 1003 A 1 HETATM 20 O O2' ATP . . . D 3 -11.628 31.542 -20.722 1 79.31 ? O2' ATP 1003 A 1 HETATM 21 C C1' ATP . . . D 3 -10.384 29.449 -20.643 1 96.05 ? C1' ATP 1003 A 1 HETATM 22 N N9 ATP . . . D 3 -8.988 29.194 -20.301 1 96.85 ? N9 ATP 1003 A 1 HETATM 23 C C8 ATP . . . D 3 -7.879 29.608 -20.991 1 95.83 ? C8 ATP 1003 A 1 HETATM 24 N N7 ATP . . . D 3 -6.743 29.293 -20.415 1 97.46 ? N7 ATP 1003 A 1 HETATM 25 C C5 ATP . . . D 3 -7.132 28.622 -19.267 1 94.77 ? C5 ATP 1003 A 1 HETATM 26 C C6 ATP . . . D 3 -6.402 28.045 -18.209 1 84.75 ? C6 ATP 1003 A 1 HETATM 27 N N6 ATP . . . D 3 -5.066 28.06 -18.133 1 82.5 ? N6 ATP 1003 A 1 HETATM 28 N N1 ATP . . . D 3 -7.098 27.458 -17.211 1 77.54 ? N1 ATP 1003 A 1 HETATM 29 C C2 ATP . . . D 3 -8.433 27.456 -17.273 1 76.76 ? C2 ATP 1003 A 1 HETATM 30 N N3 ATP . . . D 3 -9.228 27.971 -18.214 1 80.35 ? N3 ATP 1003 A 1 HETATM 31 C C4 ATP . . . D 3 -8.514 28.545 -19.187 1 92.67 ? C4 ATP 1003 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #