data_7NUC # _model_server_result.job_id w0VQQf0DlliIpBHo5CRztw _model_server_result.datetime_utc '2024-10-19 12:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nuc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 7NUC # _exptl.entry_id 7NUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NUC _cell.length_a 48.912 _cell.length_b 81.588 _cell.length_c 216.971 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 450 A CYS 449 1_555 G ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A SG CYS 453 A CYS 452 1_555 G ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc3 A SG CYS 491 A CYS 490 1_555 G ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 A SG CYS 494 A CYS 493 1_555 G ZN ZN . A ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 C O2G ATP . A ATP 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 C O2B ATP . A ATP 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc7 C O2A ATP . A ATP 1002 1_555 D MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 D MG MG . A MG 1003 1_555 I O HOH . A HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 D MG MG . A MG 1003 1_555 I O HOH . A HOH 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 D MG MG . A MG 1003 1_555 I O HOH . A HOH 1219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc11 H MG MG . A MG 1007 1_555 I O HOH . A HOH 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc12 H MG MG . A MG 1007 1_555 I O HOH . A HOH 1236 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7NUC _atom_sites.fract_transf_matrix[1][1] 0.020445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1001 1001 EDO EDO . C 3 ATP A 1 1002 1101 ATP ATP . D 4 MG A 1 1003 1201 MG MG . E 5 DCL A 1 1004 1301 DCL DCL . F 2 EDO A 1 1005 1401 EDO EDO . G 6 ZN A 1 1006 1 ZN ZN . H 4 MG A 1 1007 1 MG MG . I 7 HOH A 1 1101 46 HOH HOH . I 7 HOH A 2 1102 19 HOH HOH . I 7 HOH A 3 1103 21 HOH HOH . I 7 HOH A 4 1104 112 HOH HOH . I 7 HOH A 5 1105 72 HOH HOH . I 7 HOH A 6 1106 89 HOH HOH . I 7 HOH A 7 1107 52 HOH HOH . I 7 HOH A 8 1108 29 HOH HOH . I 7 HOH A 9 1109 61 HOH HOH . I 7 HOH A 10 1110 62 HOH HOH . I 7 HOH A 11 1111 38 HOH HOH . I 7 HOH A 12 1112 172 HOH HOH . I 7 HOH A 13 1113 49 HOH HOH . I 7 HOH A 14 1114 92 HOH HOH . I 7 HOH A 15 1115 78 HOH HOH . I 7 HOH A 16 1116 2 HOH HOH . I 7 HOH A 17 1117 103 HOH HOH . I 7 HOH A 18 1118 5 HOH HOH . I 7 HOH A 19 1119 65 HOH HOH . I 7 HOH A 20 1120 20 HOH HOH . I 7 HOH A 21 1121 8 HOH HOH . I 7 HOH A 22 1122 9 HOH HOH . I 7 HOH A 23 1123 60 HOH HOH . I 7 HOH A 24 1124 120 HOH HOH . I 7 HOH A 25 1125 148 HOH HOH . I 7 HOH A 26 1126 3 HOH HOH . I 7 HOH A 27 1127 1 HOH HOH . I 7 HOH A 28 1128 122 HOH HOH . I 7 HOH A 29 1129 66 HOH HOH . I 7 HOH A 30 1130 4 HOH HOH . I 7 HOH A 31 1131 77 HOH HOH . I 7 HOH A 32 1132 25 HOH HOH . I 7 HOH A 33 1133 7 HOH HOH . I 7 HOH A 34 1134 56 HOH HOH . I 7 HOH A 35 1135 75 HOH HOH . I 7 HOH A 36 1136 22 HOH HOH . I 7 HOH A 37 1137 10 HOH HOH . I 7 HOH A 38 1138 95 HOH HOH . I 7 HOH A 39 1139 93 HOH HOH . I 7 HOH A 40 1140 36 HOH HOH . I 7 HOH A 41 1141 73 HOH HOH . I 7 HOH A 42 1142 83 HOH HOH . I 7 HOH A 43 1143 94 HOH HOH . I 7 HOH A 44 1144 59 HOH HOH . I 7 HOH A 45 1145 32 HOH HOH . I 7 HOH A 46 1146 50 HOH HOH . I 7 HOH A 47 1147 16 HOH HOH . I 7 HOH A 48 1148 147 HOH HOH . I 7 HOH A 49 1149 64 HOH HOH . I 7 HOH A 50 1150 113 HOH HOH . I 7 HOH A 51 1151 48 HOH HOH . I 7 HOH A 52 1152 51 HOH HOH . I 7 HOH A 53 1153 139 HOH HOH . I 7 HOH A 54 1154 100 HOH HOH . I 7 HOH A 55 1155 124 HOH HOH . I 7 HOH A 56 1156 71 HOH HOH . I 7 HOH A 57 1157 15 HOH HOH . I 7 HOH A 58 1158 12 HOH HOH . I 7 HOH A 59 1159 141 HOH HOH . I 7 HOH A 60 1160 40 HOH HOH . I 7 HOH A 61 1161 11 HOH HOH . I 7 HOH A 62 1162 18 HOH HOH . I 7 HOH A 63 1163 88 HOH HOH . I 7 HOH A 64 1164 44 HOH HOH . I 7 HOH A 65 1165 151 HOH HOH . I 7 HOH A 66 1166 81 HOH HOH . I 7 HOH A 67 1167 174 HOH HOH . I 7 HOH A 68 1168 53 HOH HOH . I 7 HOH A 69 1169 42 HOH HOH . I 7 HOH A 70 1170 130 HOH HOH . I 7 HOH A 71 1171 43 HOH HOH . I 7 HOH A 72 1172 80 HOH HOH . I 7 HOH A 73 1173 131 HOH HOH . I 7 HOH A 74 1174 37 HOH HOH . I 7 HOH A 75 1175 39 HOH HOH . I 7 HOH A 76 1176 150 HOH HOH . I 7 HOH A 77 1177 24 HOH HOH . I 7 HOH A 78 1178 97 HOH HOH . I 7 HOH A 79 1179 123 HOH HOH . I 7 HOH A 80 1180 109 HOH HOH . I 7 HOH A 81 1181 133 HOH HOH . I 7 HOH A 82 1182 55 HOH HOH . I 7 HOH A 83 1183 127 HOH HOH . I 7 HOH A 84 1184 6 HOH HOH . I 7 HOH A 85 1185 138 HOH HOH . I 7 HOH A 86 1186 125 HOH HOH . I 7 HOH A 87 1187 90 HOH HOH . I 7 HOH A 88 1188 58 HOH HOH . I 7 HOH A 89 1189 57 HOH HOH . I 7 HOH A 90 1190 176 HOH HOH . I 7 HOH A 91 1191 175 HOH HOH . I 7 HOH A 92 1192 17 HOH HOH . I 7 HOH A 93 1193 54 HOH HOH . I 7 HOH A 94 1194 137 HOH HOH . I 7 HOH A 95 1195 160 HOH HOH . I 7 HOH A 96 1196 35 HOH HOH . I 7 HOH A 97 1197 118 HOH HOH . I 7 HOH A 98 1198 99 HOH HOH . I 7 HOH A 99 1199 170 HOH HOH . I 7 HOH A 100 1200 34 HOH HOH . I 7 HOH A 101 1201 152 HOH HOH . I 7 HOH A 102 1202 30 HOH HOH . I 7 HOH A 103 1203 26 HOH HOH . I 7 HOH A 104 1204 76 HOH HOH . I 7 HOH A 105 1205 110 HOH HOH . I 7 HOH A 106 1206 144 HOH HOH . I 7 HOH A 107 1207 84 HOH HOH . I 7 HOH A 108 1208 33 HOH HOH . I 7 HOH A 109 1209 74 HOH HOH . I 7 HOH A 110 1210 108 HOH HOH . I 7 HOH A 111 1211 68 HOH HOH . I 7 HOH A 112 1212 143 HOH HOH . I 7 HOH A 113 1213 149 HOH HOH . I 7 HOH A 114 1214 82 HOH HOH . I 7 HOH A 115 1215 134 HOH HOH . I 7 HOH A 116 1216 70 HOH HOH . I 7 HOH A 117 1217 13 HOH HOH . I 7 HOH A 118 1218 106 HOH HOH . I 7 HOH A 119 1219 31 HOH HOH . I 7 HOH A 120 1220 165 HOH HOH . I 7 HOH A 121 1221 153 HOH HOH . I 7 HOH A 122 1222 167 HOH HOH . I 7 HOH A 123 1223 96 HOH HOH . I 7 HOH A 124 1224 45 HOH HOH . I 7 HOH A 125 1225 23 HOH HOH . I 7 HOH A 126 1226 117 HOH HOH . I 7 HOH A 127 1227 87 HOH HOH . I 7 HOH A 128 1228 142 HOH HOH . I 7 HOH A 129 1229 67 HOH HOH . I 7 HOH A 130 1230 156 HOH HOH . I 7 HOH A 131 1231 146 HOH HOH . I 7 HOH A 132 1232 27 HOH HOH . I 7 HOH A 133 1233 69 HOH HOH . I 7 HOH A 134 1234 169 HOH HOH . I 7 HOH A 135 1235 79 HOH HOH . I 7 HOH A 136 1236 116 HOH HOH . I 7 HOH A 137 1237 155 HOH HOH . I 7 HOH A 138 1238 136 HOH HOH . I 7 HOH A 139 1239 164 HOH HOH . I 7 HOH A 140 1240 107 HOH HOH . I 7 HOH A 141 1241 114 HOH HOH . I 7 HOH A 142 1242 132 HOH HOH . I 7 HOH A 143 1243 126 HOH HOH . I 7 HOH A 144 1244 111 HOH HOH . I 7 HOH A 145 1245 145 HOH HOH . I 7 HOH A 146 1246 86 HOH HOH . I 7 HOH A 147 1247 163 HOH HOH . I 7 HOH A 148 1248 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 19.89 -17.319 -20.229 1 35.51 ? PG ATP 1002 A 1 HETATM 2 O O1G ATP . . . C 3 21.082 -17.832 -19.495 1 39.24 ? O1G ATP 1002 A 1 HETATM 3 O O2G ATP . . . C 3 20.12 -15.942 -20.848 1 28.04 ? O2G ATP 1002 A 1 HETATM 4 O O3G ATP . . . C 3 18.626 -17.234 -19.363 1 33.93 ? O3G ATP 1002 A 1 HETATM 5 P PB ATP . . . C 3 18.489 -18.159 -22.629 1 28.71 ? PB ATP 1002 A 1 HETATM 6 O O1B ATP . . . C 3 17.509 -19.256 -22.543 1 22.51 ? O1B ATP 1002 A 1 HETATM 7 O O2B ATP . . . C 3 17.993 -16.723 -22.619 1 20.27 ? O2B ATP 1002 A 1 HETATM 8 O O3B ATP . . . C 3 19.547 -18.282 -21.449 1 34.52 ? O3B ATP 1002 A 1 HETATM 9 P PA ATP . . . C 3 20.235 -17.196 -24.72 1 20.18 ? PA ATP 1002 A 1 HETATM 10 O O1A ATP . . . C 3 21.48 -17.79 -25.241 1 23.17 ? O1A ATP 1002 A 1 HETATM 11 O O2A ATP . . . C 3 20.361 -15.997 -23.79 1 17.79 ? O2A ATP 1002 A 1 HETATM 12 O O3A ATP . . . C 3 19.41 -18.294 -23.917 1 29.52 ? O3A ATP 1002 A 1 HETATM 13 O O5' ATP . . . C 3 19.279 -16.731 -25.941 1 32.26 ? O5' ATP 1002 A 1 HETATM 14 C C5' ATP . . . C 3 19.6 -17.012 -27.319 1 28.91 ? C5' ATP 1002 A 1 HETATM 15 C C4' ATP . . . C 3 18.42 -16.666 -28.193 1 27.06 ? C4' ATP 1002 A 1 HETATM 16 O O4' ATP . . . C 3 17.281 -17.481 -27.831 1 29.06 ? O4' ATP 1002 A 1 HETATM 17 C C3' ATP . . . C 3 17.946 -15.213 -28.118 1 31.65 ? C3' ATP 1002 A 1 HETATM 18 O O3' ATP . . . C 3 17.547 -14.756 -29.404 1 25.74 ? O3' ATP 1002 A 1 HETATM 19 C C2' ATP . . . C 3 16.757 -15.293 -27.157 1 27.74 ? C2' ATP 1002 A 1 HETATM 20 O O2' ATP . . . C 3 15.841 -14.224 -27.368 1 15.38 ? O2' ATP 1002 A 1 HETATM 21 C C1' ATP . . . C 3 16.17 -16.652 -27.54 1 24.36 ? C1' ATP 1002 A 1 HETATM 22 N N9 ATP . . . C 3 15.37 -17.292 -26.499 1 22.2 ? N9 ATP 1002 A 1 HETATM 23 C C8 ATP . . . C 3 15.763 -17.614 -25.227 1 23.22 ? C8 ATP 1002 A 1 HETATM 24 N N7 ATP . . . C 3 14.813 -18.128 -24.482 1 20.23 ? N7 ATP 1002 A 1 HETATM 25 C C5 ATP . . . C 3 13.711 -18.146 -25.33 1 25.22 ? C5 ATP 1002 A 1 HETATM 26 C C6 ATP . . . C 3 12.371 -18.533 -25.133 1 30.46 ? C6 ATP 1002 A 1 HETATM 27 N N6 ATP . . . C 3 11.893 -19.005 -23.977 1 27.99 ? N6 ATP 1002 A 1 HETATM 28 N N1 ATP . . . C 3 11.522 -18.401 -26.176 1 29.86 ? N1 ATP 1002 A 1 HETATM 29 C C2 ATP . . . C 3 11.991 -17.921 -27.331 1 21.87 ? C2 ATP 1002 A 1 HETATM 30 N N3 ATP . . . C 3 13.229 -17.518 -27.628 1 20.46 ? N3 ATP 1002 A 1 HETATM 31 C C4 ATP . . . C 3 14.045 -17.649 -26.576 1 20.5 ? C4 ATP 1002 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #