data_7NUE # _model_server_result.job_id hHhbfYWeA-14Dd1TCkrP4w _model_server_result.datetime_utc '2025-02-27 17:04:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7NUE # _exptl.entry_id 7NUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.659 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.06 _cell.angle_gamma 90 _cell.entry_id 7NUE _cell.length_a 41.82 _cell.length_b 118.531 _cell.length_c 71.957 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H36 N10 O7' _chem_comp.formula_weight 636.659 _chem_comp.id LSK _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C13 LSK doub 194 n n C13 N1 LSK sing 195 n n C13 N2 LSK sing 196 n n N1 C8 LSK sing 197 n n C9 C8 LSK doub 198 n y C9 C10 LSK sing 199 n y N2 C14 LSK sing 200 n n C14 C15 LSK sing 201 n n C8 C7 LSK sing 202 n y C10 C5 LSK doub 203 n y O6 C21 LSK sing 204 n n O5 C20 LSK sing 205 n n C15 C16 LSK sing 206 n n C7 C4 LSK doub 207 n y C16 C28 LSK sing 208 n n C5 C4 LSK sing 209 n y C5 C6 LSK sing 210 n y C20 C21 LSK sing 211 n n C20 C19 LSK sing 212 n n C21 C22 LSK sing 213 n n C4 C3 LSK sing 214 n y C6 C1 LSK doub 215 n y C28 C29 LSK sing 216 n n C29 N3 LSK sing 217 n n C22 N6 LSK sing 218 n n C22 O7 LSK sing 219 n n C19 C18 LSK sing 220 n n C19 O7 LSK sing 221 n n N4 C18 LSK sing 222 n n N4 C17 LSK sing 223 n n C3 O1 LSK sing 224 n n C3 C2 LSK doub 225 n y N6 C23 LSK sing 226 n y N6 C27 LSK sing 227 n y C23 N7 LSK doub 228 n y C17 N3 LSK sing 229 n n C17 N5 LSK doub 230 n n C1 C2 LSK sing 231 n y C1 C11 LSK sing 232 n n O2 C11 LSK sing 233 n n O2 C12 LSK sing 234 n n C27 N10 LSK doub 235 n y C27 C24 LSK sing 236 n y N7 C24 LSK sing 237 n y N10 C26 LSK sing 238 n y C11 O3 LSK doub 239 n n C24 C25 LSK doub 240 n y C26 N9 LSK doub 241 n y C25 N9 LSK sing 242 n y C25 N8 LSK sing 243 n n C20 H1 LSK sing 244 n n C19 H2 LSK sing 245 n n C18 H3 LSK sing 246 n n C18 H4 LSK sing 247 n n C21 H5 LSK sing 248 n n C16 H6 LSK sing 249 n n C16 H7 LSK sing 250 n n C14 H8 LSK sing 251 n n C14 H9 LSK sing 252 n n C15 H10 LSK sing 253 n n C15 H11 LSK sing 254 n n C2 H12 LSK sing 255 n n C10 H13 LSK sing 256 n n C6 H14 LSK sing 257 n n O1 H15 LSK sing 258 n n C12 H16 LSK sing 259 n n C12 H17 LSK sing 260 n n C12 H18 LSK sing 261 n n C22 H19 LSK sing 262 n n C23 H20 LSK sing 263 n n C26 H21 LSK sing 264 n n C28 H22 LSK sing 265 n n C28 H23 LSK sing 266 n n C29 H24 LSK sing 267 n n C29 H25 LSK sing 268 n n C7 H26 LSK sing 269 n n C9 H27 LSK sing 270 n n N1 H28 LSK sing 271 n n N2 H29 LSK sing 272 n n N3 H30 LSK sing 273 n n N4 H31 LSK sing 274 n n N5 H32 LSK sing 275 n n N8 H33 LSK sing 276 n n N8 H34 LSK sing 277 n n O5 H35 LSK sing 278 n n O6 H36 LSK sing 279 n n # _atom_sites.entry_id 7NUE _atom_sites.fract_transf_matrix[1][1] 0.023912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LSK A 1 401 1 LSK GCF . D 2 LSK B 1 401 2 LSK GCF . E 3 HOH A 1 501 92 HOH HOH . E 3 HOH A 2 502 115 HOH HOH . E 3 HOH A 3 503 64 HOH HOH . E 3 HOH A 4 504 68 HOH HOH . E 3 HOH A 5 505 47 HOH HOH . E 3 HOH A 6 506 84 HOH HOH . E 3 HOH A 7 507 48 HOH HOH . E 3 HOH A 8 508 89 HOH HOH . E 3 HOH A 9 509 66 HOH HOH . E 3 HOH A 10 510 65 HOH HOH . E 3 HOH A 11 511 14 HOH HOH . E 3 HOH A 12 512 6 HOH HOH . E 3 HOH A 13 513 80 HOH HOH . E 3 HOH A 14 514 22 HOH HOH . E 3 HOH A 15 515 33 HOH HOH . E 3 HOH A 16 516 76 HOH HOH . E 3 HOH A 17 517 51 HOH HOH . E 3 HOH A 18 518 75 HOH HOH . E 3 HOH A 19 519 62 HOH HOH . E 3 HOH A 20 520 96 HOH HOH . E 3 HOH A 21 521 110 HOH HOH . E 3 HOH A 22 522 40 HOH HOH . E 3 HOH A 23 523 18 HOH HOH . E 3 HOH A 24 524 104 HOH HOH . E 3 HOH A 25 525 24 HOH HOH . E 3 HOH A 26 526 124 HOH HOH . E 3 HOH A 27 527 74 HOH HOH . E 3 HOH A 28 528 34 HOH HOH . E 3 HOH A 29 529 78 HOH HOH . E 3 HOH A 30 530 27 HOH HOH . E 3 HOH A 31 531 29 HOH HOH . E 3 HOH A 32 532 9 HOH HOH . E 3 HOH A 33 533 108 HOH HOH . E 3 HOH A 34 534 23 HOH HOH . E 3 HOH A 35 535 103 HOH HOH . E 3 HOH A 36 536 38 HOH HOH . E 3 HOH A 37 537 21 HOH HOH . E 3 HOH A 38 538 11 HOH HOH . E 3 HOH A 39 539 43 HOH HOH . E 3 HOH A 40 540 82 HOH HOH . E 3 HOH A 41 541 72 HOH HOH . E 3 HOH A 42 542 10 HOH HOH . E 3 HOH A 43 543 42 HOH HOH . E 3 HOH A 44 544 32 HOH HOH . E 3 HOH A 45 545 5 HOH HOH . E 3 HOH A 46 546 54 HOH HOH . E 3 HOH A 47 547 35 HOH HOH . E 3 HOH A 48 548 55 HOH HOH . E 3 HOH A 49 549 45 HOH HOH . E 3 HOH A 50 550 90 HOH HOH . E 3 HOH A 51 551 119 HOH HOH . E 3 HOH A 52 552 117 HOH HOH . E 3 HOH A 53 553 67 HOH HOH . E 3 HOH A 54 554 1 HOH HOH . E 3 HOH A 55 555 81 HOH HOH . E 3 HOH A 56 556 69 HOH HOH . E 3 HOH A 57 557 52 HOH HOH . E 3 HOH A 58 558 102 HOH HOH . E 3 HOH A 59 559 131 HOH HOH . E 3 HOH A 60 560 39 HOH HOH . E 3 HOH A 61 561 93 HOH HOH . E 3 HOH A 62 562 112 HOH HOH . F 3 HOH B 1 501 50 HOH HOH . F 3 HOH B 2 502 73 HOH HOH . F 3 HOH B 3 503 106 HOH HOH . F 3 HOH B 4 504 53 HOH HOH . F 3 HOH B 5 505 8 HOH HOH . F 3 HOH B 6 506 77 HOH HOH . F 3 HOH B 7 507 49 HOH HOH . F 3 HOH B 8 508 28 HOH HOH . F 3 HOH B 9 509 79 HOH HOH . F 3 HOH B 10 510 26 HOH HOH . F 3 HOH B 11 511 130 HOH HOH . F 3 HOH B 12 512 30 HOH HOH . F 3 HOH B 13 513 100 HOH HOH . F 3 HOH B 14 514 123 HOH HOH . F 3 HOH B 15 515 98 HOH HOH . F 3 HOH B 16 516 17 HOH HOH . F 3 HOH B 17 517 56 HOH HOH . F 3 HOH B 18 518 127 HOH HOH . F 3 HOH B 19 519 19 HOH HOH . F 3 HOH B 20 520 63 HOH HOH . F 3 HOH B 21 521 120 HOH HOH . F 3 HOH B 22 522 41 HOH HOH . F 3 HOH B 23 523 114 HOH HOH . F 3 HOH B 24 524 125 HOH HOH . F 3 HOH B 25 525 95 HOH HOH . F 3 HOH B 26 526 3 HOH HOH . F 3 HOH B 27 527 109 HOH HOH . F 3 HOH B 28 528 7 HOH HOH . F 3 HOH B 29 529 99 HOH HOH . F 3 HOH B 30 530 88 HOH HOH . F 3 HOH B 31 531 101 HOH HOH . F 3 HOH B 32 532 61 HOH HOH . F 3 HOH B 33 533 70 HOH HOH . F 3 HOH B 34 534 107 HOH HOH . F 3 HOH B 35 535 13 HOH HOH . F 3 HOH B 36 536 94 HOH HOH . F 3 HOH B 37 537 71 HOH HOH . F 3 HOH B 38 538 129 HOH HOH . F 3 HOH B 39 539 85 HOH HOH . F 3 HOH B 40 540 128 HOH HOH . F 3 HOH B 41 541 36 HOH HOH . F 3 HOH B 42 542 16 HOH HOH . F 3 HOH B 43 543 121 HOH HOH . F 3 HOH B 44 544 83 HOH HOH . F 3 HOH B 45 545 20 HOH HOH . F 3 HOH B 46 546 91 HOH HOH . F 3 HOH B 47 547 122 HOH HOH . F 3 HOH B 48 548 60 HOH HOH . F 3 HOH B 49 549 25 HOH HOH . F 3 HOH B 50 550 113 HOH HOH . F 3 HOH B 51 551 2 HOH HOH . F 3 HOH B 52 552 15 HOH HOH . F 3 HOH B 53 553 86 HOH HOH . F 3 HOH B 54 554 111 HOH HOH . F 3 HOH B 55 555 126 HOH HOH . F 3 HOH B 56 556 87 HOH HOH . F 3 HOH B 57 557 116 HOH HOH . F 3 HOH B 58 558 44 HOH HOH . F 3 HOH B 59 559 132 HOH HOH . F 3 HOH B 60 560 37 HOH HOH . F 3 HOH B 61 561 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 LSK . . . C 2 11.179 28.076 -17.687 1 33.36 ? C20 LSK 401 A 1 HETATM 2 C C19 LSK . . . C 2 12.002 28.046 -18.98 1 32.85 ? C19 LSK 401 A 1 HETATM 3 C C18 LSK . . . C 2 12.671 26.728 -19.321 1 32.05 ? C18 LSK 401 A 1 HETATM 4 C C17 LSK . . . C 2 12.056 24.355 -19.662 1 34.54 ? C17 LSK 401 A 1 HETATM 5 C C21 LSK . . . C 2 9.742 28.403 -18.152 1 35.33 ? C21 LSK 401 A 1 HETATM 6 C C16 LSK . . . C 2 8.199 24.628 -19.507 1 50.26 ? C16 LSK 401 A 1 HETATM 7 C C4 LSK . . . C 2 2.076 29.353 -22.876 1 84.23 ? C4 LSK 401 A 1 HETATM 8 C C14 LSK . . . C 2 5.912 25.467 -18.804 1 70.91 ? C14 LSK 401 A 1 HETATM 9 C C15 LSK . . . C 2 6.966 24.389 -18.653 1 62.69 ? C15 LSK 401 A 1 HETATM 10 C C3 LSK . . . C 2 1.299 30.4 -22.317 1 87.83 ? C3 LSK 401 A 1 HETATM 11 C C8 LSK . . . C 2 3.523 27.408 -22.665 1 76.09 ? C8 LSK 401 A 1 HETATM 12 N N9 LSK . . . C 2 7.655 31.283 -23.493 1 28.2 ? N9 LSK 401 A 1 HETATM 13 C C2 LSK . . . C 2 0.631 31.289 -23.117 1 84.88 ? C2 LSK 401 A 1 HETATM 14 N N7 LSK . . . C 2 7.282 28.019 -21.763 1 42.6 ? N7 LSK 401 A 1 HETATM 15 C C5 LSK . . . C 2 2.146 29.243 -24.292 1 77.07 ? C5 LSK 401 A 1 HETATM 16 C C10 LSK . . . C 2 2.915 28.196 -24.853 1 76.02 ? C10 LSK 401 A 1 HETATM 17 C C13 LSK . . . C 2 4.555 26.514 -20.559 1 77.13 ? C13 LSK 401 A 1 HETATM 18 C C6 LSK . . . C 2 1.442 30.18 -25.084 1 74.74 ? C6 LSK 401 A 1 HETATM 19 O O1 LSK . . . C 2 1.261 30.464 -20.958 1 86.33 ? O1 LSK 401 A 1 HETATM 20 C C1 LSK . . . C 2 0.697 31.179 -24.505 1 76.23 ? C1 LSK 401 A 1 HETATM 21 C C11 LSK . . . C 2 -0.048 32.201 -25.286 1 75.34 ? C11 LSK 401 A 1 HETATM 22 C C12 LSK . . . C 2 -0.997 34.296 -24.746 1 68.57 ? C12 LSK 401 A 1 HETATM 23 C C22 LSK . . . C 2 9.982 29.035 -19.513 1 27.87 ? C22 LSK 401 A 1 HETATM 24 C C23 LSK . . . C 2 8.095 27.849 -20.747 1 39.58 ? C23 LSK 401 A 1 HETATM 25 C C24 LSK . . . C 2 7.605 29.288 -22.229 1 38.58 ? C24 LSK 401 A 1 HETATM 26 C C25 LSK . . . C 2 7.101 30.066 -23.292 1 37.08 ? C25 LSK 401 A 1 HETATM 27 C C26 LSK . . . C 2 8.621 31.698 -22.663 1 29.77 ? C26 LSK 401 A 1 HETATM 28 C C27 LSK . . . C 2 8.613 29.85 -21.461 1 32.08 ? C27 LSK 401 A 1 HETATM 29 C C28 LSK . . . C 2 8.736 23.358 -20.139 1 45.22 ? C28 LSK 401 A 1 HETATM 30 C C29 LSK . . . C 2 10.058 22.889 -19.569 1 43.96 ? C29 LSK 401 A 1 HETATM 31 C C7 LSK . . . C 2 2.778 28.412 -22.085 1 84.7 ? C7 LSK 401 A 1 HETATM 32 C C9 LSK . . . C 2 3.582 27.313 -24.054 1 73.88 ? C9 LSK 401 A 1 HETATM 33 N N1 LSK . . . C 2 4.23 26.455 -21.893 1 74.18 ? N1 LSK 401 A 1 HETATM 34 N N10 LSK . . . C 2 9.16 31.063 -21.615 1 26.4 ? N10 LSK 401 A 1 HETATM 35 N N2 LSK . . . C 2 5.44 25.571 -20.178 1 80.41 ? N2 LSK 401 A 1 HETATM 36 N N3 LSK . . . C 2 11.195 23.486 -20.254 1 37.08 ? N3 LSK 401 A 1 HETATM 37 N N4 LSK . . . C 2 11.704 25.663 -19.547 1 36.97 ? N4 LSK 401 A 1 HETATM 38 N N5 LSK . . . C 2 13.19 23.873 -19.245 1 31.92 ? N5 LSK 401 A 1 HETATM 39 N N6 LSK . . . C 2 8.907 28.922 -20.492 1 34.55 ? N6 LSK 401 A 1 HETATM 40 N N8 LSK . . . C 2 6.121 29.665 -24.115 1 36.09 ? N8 LSK 401 A 1 HETATM 41 O O2 LSK . . . C 2 -0.922 32.869 -24.528 1 81.01 ? O2 LSK 401 A 1 HETATM 42 O O3 LSK . . . C 2 0.179 32.473 -26.439 1 68.65 ? O3 LSK 401 A 1 HETATM 43 O O4 LSK . . . C 2 4.092 27.335 -19.766 1 78.88 ? O4 LSK 401 A 1 HETATM 44 O O5 LSK . . . C 2 11.704 29.074 -16.829 1 27.77 ? O5 LSK 401 A 1 HETATM 45 O O6 LSK . . . C 2 9.137 29.384 -17.322 1 30.13 ? O6 LSK 401 A 1 HETATM 46 O O7 LSK . . . C 2 11.082 28.334 -20.046 1 30.46 ? O7 LSK 401 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #