data_7NUE
#
_model_server_result.job_id            5fUO0E82pNcwdaPtL20VYA 
_model_server_result.datetime_utc      '2025-02-18 12:03:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nue 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7NUE 
#
_exptl.entry_id    7NUE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              636.659 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.06 
_cell.angle_gamma         90 
_cell.entry_id            7NUE 
_cell.length_a            41.82 
_cell.length_b            118.531 
_cell.length_c            71.957 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NUE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C29 H36 N10 O7' 
_chem_comp.formula_weight    636.659 
_chem_comp.id                LSK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 6-[5-[[~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]carbamimidoyl]amino]pentylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C13 LSK doub 194 n n 
C13 N1 LSK sing 195 n n 
C13 N2 LSK sing 196 n n 
N1 C8 LSK sing 197 n n 
C9 C8 LSK doub 198 n y 
C9 C10 LSK sing 199 n y 
N2 C14 LSK sing 200 n n 
C14 C15 LSK sing 201 n n 
C8 C7 LSK sing 202 n y 
C10 C5 LSK doub 203 n y 
O6 C21 LSK sing 204 n n 
O5 C20 LSK sing 205 n n 
C15 C16 LSK sing 206 n n 
C7 C4 LSK doub 207 n y 
C16 C28 LSK sing 208 n n 
C5 C4 LSK sing 209 n y 
C5 C6 LSK sing 210 n y 
C20 C21 LSK sing 211 n n 
C20 C19 LSK sing 212 n n 
C21 C22 LSK sing 213 n n 
C4 C3 LSK sing 214 n y 
C6 C1 LSK doub 215 n y 
C28 C29 LSK sing 216 n n 
C29 N3 LSK sing 217 n n 
C22 N6 LSK sing 218 n n 
C22 O7 LSK sing 219 n n 
C19 C18 LSK sing 220 n n 
C19 O7 LSK sing 221 n n 
N4 C18 LSK sing 222 n n 
N4 C17 LSK sing 223 n n 
C3 O1 LSK sing 224 n n 
C3 C2 LSK doub 225 n y 
N6 C23 LSK sing 226 n y 
N6 C27 LSK sing 227 n y 
C23 N7 LSK doub 228 n y 
C17 N3 LSK sing 229 n n 
C17 N5 LSK doub 230 n n 
C1 C2 LSK sing 231 n y 
C1 C11 LSK sing 232 n n 
O2 C11 LSK sing 233 n n 
O2 C12 LSK sing 234 n n 
C27 N10 LSK doub 235 n y 
C27 C24 LSK sing 236 n y 
N7 C24 LSK sing 237 n y 
N10 C26 LSK sing 238 n y 
C11 O3 LSK doub 239 n n 
C24 C25 LSK doub 240 n y 
C26 N9 LSK doub 241 n y 
C25 N9 LSK sing 242 n y 
C25 N8 LSK sing 243 n n 
C20 H1 LSK sing 244 n n 
C19 H2 LSK sing 245 n n 
C18 H3 LSK sing 246 n n 
C18 H4 LSK sing 247 n n 
C21 H5 LSK sing 248 n n 
C16 H6 LSK sing 249 n n 
C16 H7 LSK sing 250 n n 
C14 H8 LSK sing 251 n n 
C14 H9 LSK sing 252 n n 
C15 H10 LSK sing 253 n n 
C15 H11 LSK sing 254 n n 
C2 H12 LSK sing 255 n n 
C10 H13 LSK sing 256 n n 
C6 H14 LSK sing 257 n n 
O1 H15 LSK sing 258 n n 
C12 H16 LSK sing 259 n n 
C12 H17 LSK sing 260 n n 
C12 H18 LSK sing 261 n n 
C22 H19 LSK sing 262 n n 
C23 H20 LSK sing 263 n n 
C26 H21 LSK sing 264 n n 
C28 H22 LSK sing 265 n n 
C28 H23 LSK sing 266 n n 
C29 H24 LSK sing 267 n n 
C29 H25 LSK sing 268 n n 
C7 H26 LSK sing 269 n n 
C9 H27 LSK sing 270 n n 
N1 H28 LSK sing 271 n n 
N2 H29 LSK sing 272 n n 
N3 H30 LSK sing 273 n n 
N4 H31 LSK sing 274 n n 
N5 H32 LSK sing 275 n n 
N8 H33 LSK sing 276 n n 
N8 H34 LSK sing 277 n n 
O5 H35 LSK sing 278 n n 
O6 H36 LSK sing 279 n n 
#
_atom_sites.entry_id                     7NUE 
_atom_sites.fract_transf_matrix[1][1]    0.023912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005546 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LSK A 1 401 1 LSK GCF . 
D 2 LSK B 1 401 2 LSK GCF . 
E 3 HOH A 1 501 92 HOH HOH . 
E 3 HOH A 2 502 115 HOH HOH . 
E 3 HOH A 3 503 64 HOH HOH . 
E 3 HOH A 4 504 68 HOH HOH . 
E 3 HOH A 5 505 47 HOH HOH . 
E 3 HOH A 6 506 84 HOH HOH . 
E 3 HOH A 7 507 48 HOH HOH . 
E 3 HOH A 8 508 89 HOH HOH . 
E 3 HOH A 9 509 66 HOH HOH . 
E 3 HOH A 10 510 65 HOH HOH . 
E 3 HOH A 11 511 14 HOH HOH . 
E 3 HOH A 12 512 6 HOH HOH . 
E 3 HOH A 13 513 80 HOH HOH . 
E 3 HOH A 14 514 22 HOH HOH . 
E 3 HOH A 15 515 33 HOH HOH . 
E 3 HOH A 16 516 76 HOH HOH . 
E 3 HOH A 17 517 51 HOH HOH . 
E 3 HOH A 18 518 75 HOH HOH . 
E 3 HOH A 19 519 62 HOH HOH . 
E 3 HOH A 20 520 96 HOH HOH . 
E 3 HOH A 21 521 110 HOH HOH . 
E 3 HOH A 22 522 40 HOH HOH . 
E 3 HOH A 23 523 18 HOH HOH . 
E 3 HOH A 24 524 104 HOH HOH . 
E 3 HOH A 25 525 24 HOH HOH . 
E 3 HOH A 26 526 124 HOH HOH . 
E 3 HOH A 27 527 74 HOH HOH . 
E 3 HOH A 28 528 34 HOH HOH . 
E 3 HOH A 29 529 78 HOH HOH . 
E 3 HOH A 30 530 27 HOH HOH . 
E 3 HOH A 31 531 29 HOH HOH . 
E 3 HOH A 32 532 9 HOH HOH . 
E 3 HOH A 33 533 108 HOH HOH . 
E 3 HOH A 34 534 23 HOH HOH . 
E 3 HOH A 35 535 103 HOH HOH . 
E 3 HOH A 36 536 38 HOH HOH . 
E 3 HOH A 37 537 21 HOH HOH . 
E 3 HOH A 38 538 11 HOH HOH . 
E 3 HOH A 39 539 43 HOH HOH . 
E 3 HOH A 40 540 82 HOH HOH . 
E 3 HOH A 41 541 72 HOH HOH . 
E 3 HOH A 42 542 10 HOH HOH . 
E 3 HOH A 43 543 42 HOH HOH . 
E 3 HOH A 44 544 32 HOH HOH . 
E 3 HOH A 45 545 5 HOH HOH . 
E 3 HOH A 46 546 54 HOH HOH . 
E 3 HOH A 47 547 35 HOH HOH . 
E 3 HOH A 48 548 55 HOH HOH . 
E 3 HOH A 49 549 45 HOH HOH . 
E 3 HOH A 50 550 90 HOH HOH . 
E 3 HOH A 51 551 119 HOH HOH . 
E 3 HOH A 52 552 117 HOH HOH . 
E 3 HOH A 53 553 67 HOH HOH . 
E 3 HOH A 54 554 1 HOH HOH . 
E 3 HOH A 55 555 81 HOH HOH . 
E 3 HOH A 56 556 69 HOH HOH . 
E 3 HOH A 57 557 52 HOH HOH . 
E 3 HOH A 58 558 102 HOH HOH . 
E 3 HOH A 59 559 131 HOH HOH . 
E 3 HOH A 60 560 39 HOH HOH . 
E 3 HOH A 61 561 93 HOH HOH . 
E 3 HOH A 62 562 112 HOH HOH . 
F 3 HOH B 1 501 50 HOH HOH . 
F 3 HOH B 2 502 73 HOH HOH . 
F 3 HOH B 3 503 106 HOH HOH . 
F 3 HOH B 4 504 53 HOH HOH . 
F 3 HOH B 5 505 8 HOH HOH . 
F 3 HOH B 6 506 77 HOH HOH . 
F 3 HOH B 7 507 49 HOH HOH . 
F 3 HOH B 8 508 28 HOH HOH . 
F 3 HOH B 9 509 79 HOH HOH . 
F 3 HOH B 10 510 26 HOH HOH . 
F 3 HOH B 11 511 130 HOH HOH . 
F 3 HOH B 12 512 30 HOH HOH . 
F 3 HOH B 13 513 100 HOH HOH . 
F 3 HOH B 14 514 123 HOH HOH . 
F 3 HOH B 15 515 98 HOH HOH . 
F 3 HOH B 16 516 17 HOH HOH . 
F 3 HOH B 17 517 56 HOH HOH . 
F 3 HOH B 18 518 127 HOH HOH . 
F 3 HOH B 19 519 19 HOH HOH . 
F 3 HOH B 20 520 63 HOH HOH . 
F 3 HOH B 21 521 120 HOH HOH . 
F 3 HOH B 22 522 41 HOH HOH . 
F 3 HOH B 23 523 114 HOH HOH . 
F 3 HOH B 24 524 125 HOH HOH . 
F 3 HOH B 25 525 95 HOH HOH . 
F 3 HOH B 26 526 3 HOH HOH . 
F 3 HOH B 27 527 109 HOH HOH . 
F 3 HOH B 28 528 7 HOH HOH . 
F 3 HOH B 29 529 99 HOH HOH . 
F 3 HOH B 30 530 88 HOH HOH . 
F 3 HOH B 31 531 101 HOH HOH . 
F 3 HOH B 32 532 61 HOH HOH . 
F 3 HOH B 33 533 70 HOH HOH . 
F 3 HOH B 34 534 107 HOH HOH . 
F 3 HOH B 35 535 13 HOH HOH . 
F 3 HOH B 36 536 94 HOH HOH . 
F 3 HOH B 37 537 71 HOH HOH . 
F 3 HOH B 38 538 129 HOH HOH . 
F 3 HOH B 39 539 85 HOH HOH . 
F 3 HOH B 40 540 128 HOH HOH . 
F 3 HOH B 41 541 36 HOH HOH . 
F 3 HOH B 42 542 16 HOH HOH . 
F 3 HOH B 43 543 121 HOH HOH . 
F 3 HOH B 44 544 83 HOH HOH . 
F 3 HOH B 45 545 20 HOH HOH . 
F 3 HOH B 46 546 91 HOH HOH . 
F 3 HOH B 47 547 122 HOH HOH . 
F 3 HOH B 48 548 60 HOH HOH . 
F 3 HOH B 49 549 25 HOH HOH . 
F 3 HOH B 50 550 113 HOH HOH . 
F 3 HOH B 51 551 2 HOH HOH . 
F 3 HOH B 52 552 15 HOH HOH . 
F 3 HOH B 53 553 86 HOH HOH . 
F 3 HOH B 54 554 111 HOH HOH . 
F 3 HOH B 55 555 126 HOH HOH . 
F 3 HOH B 56 556 87 HOH HOH . 
F 3 HOH B 57 557 116 HOH HOH . 
F 3 HOH B 58 558 44 HOH HOH . 
F 3 HOH B 59 559 132 HOH HOH . 
F 3 HOH B 60 560 37 HOH HOH . 
F 3 HOH B 61 561 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 LSK . . . D 2 -0.838 -0.252 7.192 1 43.74 ? C20 LSK 401 B 1 
HETATM 2 C C19 LSK . . . D 2 -0.517 -0.591 8.655 1 40.86 ? C19 LSK 401 B 1 
HETATM 3 C C18 LSK . . . D 2 0.619 0.165 9.321 1 44.12 ? C18 LSK 401 B 1 
HETATM 4 C C17 LSK . . . D 2 1.164 2.587 9.245 1 48.7 ? C17 LSK 401 B 1 
HETATM 5 C C21 LSK . . . D 2 -2.322 0.167 7.214 1 45.66 ? C21 LSK 401 B 1 
HETATM 6 C C16 LSK . . . D 2 -2.105 4.835 8.072 1 61.78 ? C16 LSK 401 B 1 
HETATM 7 C C4 LSK . . . D 2 -8.516 3.312 8.933 1 90.07 ? C4 LSK 401 B 1 
HETATM 8 C C14 LSK . . . D 2 -3.907 5.105 6.218 1 81.25 ? C14 LSK 401 B 1 
HETATM 9 C C15 LSK . . . D 2 -3.233 5.679 7.46 1 70.63 ? C15 LSK 401 B 1 
HETATM 10 C C3 LSK . . . D 2 -8.576 4.045 10.154 1 88.14 ? C3 LSK 401 B 1 
HETATM 11 C C8 LSK . . . D 2 -7.325 2.457 6.985 1 84.82 ? C8 LSK 401 B 1 
HETATM 12 N N9 LSK . . . D 2 -6.999 -0.993 11.443 1 34.43 ? N9 LSK 401 B 1 
HETATM 13 C C2 LSK . . . D 2 -9.752 4.158 10.855 1 84.44 ? C2 LSK 401 B 1 
HETATM 14 N N7 LSK . . . D 2 -5.233 1.904 9.936 1 50.74 ? N7 LSK 401 B 1 
HETATM 15 C C5 LSK . . . D 2 -9.709 2.698 8.459 1 85.51 ? C5 LSK 401 B 1 
HETATM 16 C C10 LSK . . . D 2 -9.665 1.97 7.249 1 84.16 ? C10 LSK 401 B 1 
HETATM 17 C C13 LSK . . . D 2 -5.119 3.016 5.831 1 86.96 ? C13 LSK 401 B 1 
HETATM 18 C C6 LSK . . . D 2 -10.897 2.84 9.209 1 80.89 ? C6 LSK 401 B 1 
HETATM 19 O O1 LSK . . . D 2 -7.409 4.615 10.573 1 86.83 ? O1 LSK 401 B 1 
HETATM 20 C C1 LSK . . . D 2 -10.918 3.557 10.379 1 80.4 ? C1 LSK 401 B 1 
HETATM 21 C C11 LSK . . . D 2 -12.187 3.674 11.15 1 77.65 ? C11 LSK 401 B 1 
HETATM 22 C C12 LSK . . . D 2 -14.214 2.566 11.651 1 69.55 ? C12 LSK 401 B 1 
HETATM 23 C C22 LSK . . . D 2 -2.806 -0.431 8.527 1 40.99 ? C22 LSK 401 B 1 
HETATM 24 C C23 LSK . . . D 2 -4.183 1.586 9.219 1 50.54 ? C23 LSK 401 B 1 
HETATM 25 C C24 LSK . . . D 2 -5.712 0.678 10.379 1 48.77 ? C24 LSK 401 B 1 
HETATM 26 C C25 LSK . . . D 2 -6.814 0.321 11.181 1 44.8 ? C25 LSK 401 B 1 
HETATM 27 C C26 LSK . . . D 2 -6.147 -1.879 10.922 1 32.93 ? C26 LSK 401 B 1 
HETATM 28 C C27 LSK . . . D 2 -4.915 -0.353 9.914 1 41.14 ? C27 LSK 401 B 1 
HETATM 29 C C28 LSK . . . D 2 -0.75 5.557 8.166 1 58.11 ? C28 LSK 401 B 1 
HETATM 30 C C29 LSK . . . D 2 0.291 4.924 9.084 1 48.95 ? C29 LSK 401 B 1 
HETATM 31 C C7 LSK . . . D 2 -7.326 3.167 8.168 1 88.08 ? C7 LSK 401 B 1 
HETATM 32 C C9 LSK . . . D 2 -8.503 1.852 6.545 1 84.43 ? C9 LSK 401 B 1 
HETATM 33 N N1 LSK . . . D 2 -6.191 2.218 6.164 1 84.75 ? N1 LSK 401 B 1 
HETATM 34 N N10 LSK . . . D 2 -5.085 -1.66 10.144 1 35.55 ? N10 LSK 401 B 1 
HETATM 35 N N2 LSK . . . D 2 -5.006 4.186 6.503 1 84.03 ? N2 LSK 401 B 1 
HETATM 36 N N3 LSK . . . D 2 0.143 3.478 9.168 1 51.54 ? N3 LSK 401 B 1 
HETATM 37 N N4 LSK . . . D 2 1.01 1.386 8.629 1 47.58 ? N4 LSK 401 B 1 
HETATM 38 N N5 LSK . . . D 2 2.218 2.938 9.922 1 40.78 ? N5 LSK 401 B 1 
HETATM 39 N N6 LSK . . . D 2 -3.932 0.24 9.159 1 45.45 ? N6 LSK 401 B 1 
HETATM 40 N N8 LSK . . . D 2 -7.678 1.206 11.696 1 45.38 ? N8 LSK 401 B 1 
HETATM 41 O O2 LSK . . . D 2 -13.112 2.802 10.739 1 72.01 ? O2 LSK 401 B 1 
HETATM 42 O O3 LSK . . . D 2 -12.351 4.43 12.078 1 77.27 ? O3 LSK 401 B 1 
HETATM 43 O O4 LSK . . . D 2 -4.298 2.682 4.978 1 91.05 ? O4 LSK 401 B 1 
HETATM 44 O O5 LSK . . . D 2 -0.71 -1.442 6.43 1 35.66 ? O5 LSK 401 B 1 
HETATM 45 O O6 LSK . . . D 2 -3.033 -0.49 6.174 1 39.51 ? O6 LSK 401 B 1 
HETATM 46 O O7 LSK . . . D 2 -1.71 -0.303 9.401 1 36.49 ? O7 LSK 401 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           46 
#