data_7NUK # _model_server_result.job_id 3PkPEHkelXKrWVtPcbFZjg _model_server_result.datetime_utc '2024-11-20 18:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 7NUK # _exptl.entry_id 7NUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NUK _cell.length_a 67.979 _cell.length_b 100.929 _cell.length_c 104.183 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 145 B CYS 145 1_555 G C14 USH . B USH 704 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.808 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 G C14 USH . B USH 704 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.808 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7NUK _atom_sites.fract_transf_matrix[1][1] 0.01471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 601 601 DMS DMS . D 2 DMS B 1 701 701 DMS DMS . E 2 DMS B 1 702 801 DMS DMS . F 2 DMS B 1 703 901 DMS DMS . G 3 USH B 1 704 1001 USH LIG . H 4 HOH A 1 701 106 HOH HOH . H 4 HOH A 2 702 62 HOH HOH . H 4 HOH A 3 703 112 HOH HOH . H 4 HOH A 4 704 87 HOH HOH . H 4 HOH A 5 705 60 HOH HOH . H 4 HOH A 6 706 25 HOH HOH . H 4 HOH A 7 707 31 HOH HOH . H 4 HOH A 8 708 97 HOH HOH . H 4 HOH A 9 709 55 HOH HOH . H 4 HOH A 10 710 155 HOH HOH . H 4 HOH A 11 711 36 HOH HOH . H 4 HOH A 12 712 122 HOH HOH . H 4 HOH A 13 713 111 HOH HOH . H 4 HOH A 14 714 17 HOH HOH . H 4 HOH A 15 715 126 HOH HOH . H 4 HOH A 16 716 85 HOH HOH . H 4 HOH A 17 717 108 HOH HOH . H 4 HOH A 18 718 64 HOH HOH . H 4 HOH A 19 719 125 HOH HOH . H 4 HOH A 20 720 37 HOH HOH . H 4 HOH A 21 721 65 HOH HOH . H 4 HOH A 22 722 74 HOH HOH . H 4 HOH A 23 723 11 HOH HOH . H 4 HOH A 24 724 43 HOH HOH . H 4 HOH A 25 725 70 HOH HOH . H 4 HOH A 26 726 28 HOH HOH . H 4 HOH A 27 727 47 HOH HOH . H 4 HOH A 28 728 51 HOH HOH . H 4 HOH A 29 729 69 HOH HOH . H 4 HOH A 30 730 42 HOH HOH . H 4 HOH A 31 731 38 HOH HOH . H 4 HOH A 32 732 29 HOH HOH . H 4 HOH A 33 733 34 HOH HOH . H 4 HOH A 34 734 67 HOH HOH . H 4 HOH A 35 735 15 HOH HOH . H 4 HOH A 36 736 81 HOH HOH . H 4 HOH A 37 737 78 HOH HOH . H 4 HOH A 38 738 7 HOH HOH . H 4 HOH A 39 739 27 HOH HOH . H 4 HOH A 40 740 102 HOH HOH . H 4 HOH A 41 741 104 HOH HOH . H 4 HOH A 42 742 8 HOH HOH . H 4 HOH A 43 743 123 HOH HOH . H 4 HOH A 44 744 114 HOH HOH . H 4 HOH A 45 745 77 HOH HOH . H 4 HOH A 46 746 5 HOH HOH . H 4 HOH A 47 747 101 HOH HOH . H 4 HOH A 48 748 61 HOH HOH . H 4 HOH A 49 749 1 HOH HOH . H 4 HOH A 50 750 24 HOH HOH . H 4 HOH A 51 751 115 HOH HOH . H 4 HOH A 52 752 113 HOH HOH . H 4 HOH A 53 753 137 HOH HOH . H 4 HOH A 54 754 56 HOH HOH . I 4 HOH B 1 801 150 HOH HOH . I 4 HOH B 2 802 141 HOH HOH . I 4 HOH B 3 803 147 HOH HOH . I 4 HOH B 4 804 35 HOH HOH . I 4 HOH B 5 805 136 HOH HOH . I 4 HOH B 6 806 68 HOH HOH . I 4 HOH B 7 807 151 HOH HOH . I 4 HOH B 8 808 22 HOH HOH . I 4 HOH B 9 809 134 HOH HOH . I 4 HOH B 10 810 120 HOH HOH . I 4 HOH B 11 811 144 HOH HOH . I 4 HOH B 12 812 39 HOH HOH . I 4 HOH B 13 813 71 HOH HOH . I 4 HOH B 14 814 57 HOH HOH . I 4 HOH B 15 815 72 HOH HOH . I 4 HOH B 16 816 83 HOH HOH . I 4 HOH B 17 817 88 HOH HOH . I 4 HOH B 18 818 9 HOH HOH . I 4 HOH B 19 819 116 HOH HOH . I 4 HOH B 20 820 133 HOH HOH . I 4 HOH B 21 821 160 HOH HOH . I 4 HOH B 22 822 16 HOH HOH . I 4 HOH B 23 823 49 HOH HOH . I 4 HOH B 24 824 30 HOH HOH . I 4 HOH B 25 825 79 HOH HOH . I 4 HOH B 26 826 139 HOH HOH . I 4 HOH B 27 827 76 HOH HOH . I 4 HOH B 28 828 19 HOH HOH . I 4 HOH B 29 829 95 HOH HOH . I 4 HOH B 30 830 138 HOH HOH . I 4 HOH B 31 831 46 HOH HOH . I 4 HOH B 32 832 135 HOH HOH . I 4 HOH B 33 833 148 HOH HOH . I 4 HOH B 34 834 107 HOH HOH . I 4 HOH B 35 835 119 HOH HOH . I 4 HOH B 36 836 90 HOH HOH . I 4 HOH B 37 837 127 HOH HOH . I 4 HOH B 38 838 66 HOH HOH . I 4 HOH B 39 839 32 HOH HOH . I 4 HOH B 40 840 58 HOH HOH . I 4 HOH B 41 841 86 HOH HOH . I 4 HOH B 42 842 157 HOH HOH . I 4 HOH B 43 843 93 HOH HOH . I 4 HOH B 44 844 149 HOH HOH . I 4 HOH B 45 845 153 HOH HOH . I 4 HOH B 46 846 75 HOH HOH . I 4 HOH B 47 847 124 HOH HOH . I 4 HOH B 48 848 156 HOH HOH . I 4 HOH B 49 849 91 HOH HOH . I 4 HOH B 50 850 40 HOH HOH . I 4 HOH B 51 851 12 HOH HOH . I 4 HOH B 52 852 52 HOH HOH . I 4 HOH B 53 853 18 HOH HOH . I 4 HOH B 54 854 146 HOH HOH . I 4 HOH B 55 855 154 HOH HOH . I 4 HOH B 56 856 23 HOH HOH . I 4 HOH B 57 857 161 HOH HOH . I 4 HOH B 58 858 21 HOH HOH . I 4 HOH B 59 859 59 HOH HOH . I 4 HOH B 60 860 143 HOH HOH . I 4 HOH B 61 861 84 HOH HOH . I 4 HOH B 62 862 41 HOH HOH . I 4 HOH B 63 863 13 HOH HOH . I 4 HOH B 64 864 82 HOH HOH . I 4 HOH B 65 865 44 HOH HOH . I 4 HOH B 66 866 53 HOH HOH . I 4 HOH B 67 867 94 HOH HOH . I 4 HOH B 68 868 145 HOH HOH . I 4 HOH B 69 869 4 HOH HOH . I 4 HOH B 70 870 117 HOH HOH . I 4 HOH B 71 871 50 HOH HOH . I 4 HOH B 72 872 121 HOH HOH . I 4 HOH B 73 873 89 HOH HOH . I 4 HOH B 74 874 110 HOH HOH . I 4 HOH B 75 875 158 HOH HOH . I 4 HOH B 76 876 131 HOH HOH . I 4 HOH B 77 877 100 HOH HOH . I 4 HOH B 78 878 92 HOH HOH . I 4 HOH B 79 879 118 HOH HOH . I 4 HOH B 80 880 142 HOH HOH . I 4 HOH B 81 881 132 HOH HOH . I 4 HOH B 82 882 98 HOH HOH . I 4 HOH B 83 883 109 HOH HOH . I 4 HOH B 84 884 140 HOH HOH . I 4 HOH B 85 885 128 HOH HOH . I 4 HOH B 86 886 159 HOH HOH . I 4 HOH B 87 887 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . E 2 16.845 4.461 -25.045 0.29 31.51 ? S DMS 702 B 1 HETATM 2 S S DMS . B . E 2 16.845 4.461 -25.045 0.29 31.51 ? S DMS 702 B 1 HETATM 3 O O DMS . A . E 2 16.15 3.605 -26.074 0.29 29.51 ? O DMS 702 B 1 HETATM 4 O O DMS . B . E 2 16.15 3.605 -26.074 0.29 29.51 ? O DMS 702 B 1 HETATM 5 C C1 DMS . A . E 2 18.57 4.446 -25.46 0.29 31.02 ? C1 DMS 702 B 1 HETATM 6 C C1 DMS . B . E 2 18.57 4.446 -25.46 0.29 31.02 ? C1 DMS 702 B 1 HETATM 7 C C2 DMS . A . E 2 16.507 6.151 -25.479 0.29 30.27 ? C2 DMS 702 B 1 HETATM 8 C C2 DMS . B . E 2 16.507 6.151 -25.479 0.29 30.27 ? C2 DMS 702 B 1 HETATM 9 H H11 DMS . A . E 2 19.058 4.989 -24.827 0.29 31.22 ? H11 DMS 702 B 1 HETATM 10 H H11 DMS . B . E 2 19.058 4.989 -24.827 0.29 31.22 ? H11 DMS 702 B 1 HETATM 11 H H12 DMS . A . E 2 18.689 4.802 -26.351 0.29 31.2 ? H12 DMS 702 B 1 HETATM 12 H H12 DMS . B . E 2 18.689 4.802 -26.351 0.29 31.2 ? H12 DMS 702 B 1 HETATM 13 H H13 DMS . A . E 2 18.9 3.537 -25.429 0.29 31.21 ? H13 DMS 702 B 1 HETATM 14 H H13 DMS . B . E 2 18.9 3.537 -25.429 0.29 31.21 ? H13 DMS 702 B 1 HETATM 15 H H21 DMS . A . E 2 16.956 6.739 -24.856 0.29 30.67 ? H21 DMS 702 B 1 HETATM 16 H H21 DMS . B . E 2 16.956 6.739 -24.856 0.29 30.67 ? H21 DMS 702 B 1 HETATM 17 H H22 DMS . A . E 2 15.553 6.308 -25.44 0.29 30.7 ? H22 DMS 702 B 1 HETATM 18 H H22 DMS . B . E 2 15.553 6.308 -25.44 0.29 30.7 ? H22 DMS 702 B 1 HETATM 19 H H23 DMS . A . E 2 16.827 6.323 -26.374 0.29 30.67 ? H23 DMS 702 B 1 HETATM 20 H H23 DMS . B . E 2 16.827 6.323 -26.374 0.29 30.67 ? H23 DMS 702 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #